Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 337 |
| AccIII | TCCGGA | 1 cut(s) | 454 |
| AclWI | GGATC | 3 cut(s) | 74, 168, 240 |
| AcuI | CTGAAG | 2 cut(s) | 443, 501 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 120, 509, 529 |
| AgsI | TTSAA | 2 cut(s) | 83, 406 |
| AjnI | CCWGG | 1 cut(s) | 228 |
| AluBI | AGCT | 2 cut(s) | 52, 188 |
| AluI | AGCT | 2 cut(s) | 52, 188 |
| AlwI | GGATC | 3 cut(s) | 74, 168, 240 |
| Ama87I | CYCGRG | 1 cut(s) | 189 |
| Aor13HI | TCCGGA | 1 cut(s) | 454 |
| AspA2I | CCTAGG | 1 cut(s) | 524 |
| AspS9I | GGNCC | 1 cut(s) | 193 |
| AsuC2I | CCSGG | 1 cut(s) | 96 |
| AsuHPI | GGTGA | 1 cut(s) | 475 |
| AvaI | CYCGRG | 1 cut(s) | 189 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| AvrII | CCTAGG | 1 cut(s) | 524 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 294, 327 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| BbvCI | CCTCAGC | 1 cut(s) | 543 |
| BccI | CCATC | 2 cut(s) | 17, 542 |
| BciT130I | CCWGG | 1 cut(s) | 230 |
| BcnI | CCSGG | 1 cut(s) | 96 |
| BfaI | CTAG | 2 cut(s) | 350, 525 |
| BlnI | CCTAGG | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 2 cut(s) | 96, 230 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmeT110I | CYCGRG | 1 cut(s) | 189 |
| BmgT120I | GGNCC | 1 cut(s) | 193 |
| BmiI | GGNNCC | 1 cut(s) | 194 |
| BmrFI | CCNGG | 2 cut(s) | 96, 230 |
| BmsI | GCATC | 1 cut(s) | 96 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 305, 337 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| Bpu10I | CCTNAGC | 1 cut(s) | 543 |
| BpuMI | CCSGG | 1 cut(s) | 96 |
| Bsa29I | ATCGAT | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 2 cut(s) | 114, 524 |
| BsaWI | WCCGGW | 1 cut(s) | 454 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 120, 509, 529 |
| BseAI | TCCGGA | 1 cut(s) | 454 |
| BseBI | CCWGG | 1 cut(s) | 230 |
| BseCI | ATCGAT | 1 cut(s) | 300 |
| BseDI | CCNNGG | 2 cut(s) | 114, 524 |
| BseGI | GGATG | 3 cut(s) | 87, 292, 553 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 120, 509, 529 |
| BseMII | CTCAG | 1 cut(s) | 534 |
| BseRI | GAGGAG | 3 cut(s) | 329, 545, 548 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseYI | CCCAGC | 1 cut(s) | 375 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| BshVI | ATCGAT | 1 cut(s) | 300 |
| BsiHKCI | CYCGRG | 1 cut(s) | 189 |
| BsiSI | CCGG | 3 cut(s) | 95, 196, 455 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 120, 509, 529 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| BsoBI | CYCGRG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 2 cut(s) | 323, 451 |
| Bsp13I | TCCGGA | 1 cut(s) | 454 |
| Bsp143I | GATC | 4 cut(s) | 3, 66, 160, 232 |
| BspCNI | CTCAG | 1 cut(s) | 535 |
| BspDI | ATCGAT | 1 cut(s) | 300 |
| BspEI | TCCGGA | 1 cut(s) | 454 |
| BspLI | GGNNCC | 1 cut(s) | 194 |
| BspPI | GGATC | 3 cut(s) | 74, 168, 240 |
| BssECI | CCNNGG | 2 cut(s) | 114, 524 |
| BssMI | GATC | 4 cut(s) | 3, 66, 160, 232 |
| BssT1I | CCWWGG | 1 cut(s) | 524 |
| Bst2UI | CCWGG | 1 cut(s) | 230 |
| Bst4CI | ACNGT | 2 cut(s) | 118, 307 |
| BstC8I | GCNNGC | 2 cut(s) | 323, 554 |
| BstDEI | CTNAG | 1 cut(s) | 543 |
| BstDSI | CCRYGG | 1 cut(s) | 114 |
| BstF5I | GGATG | 3 cut(s) | 87, 292, 553 |
| BstKTI | GATC | 4 cut(s) | 6, 69, 163, 235 |
| BstMBI | GATC | 4 cut(s) | 3, 66, 160, 232 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 350 |
| BstNI | CCWGG | 1 cut(s) | 230 |
| BstSCI | CCNGG | 2 cut(s) | 94, 228 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstX2I | RGATCY | 1 cut(s) | 66 |
| BstYI | RGATCY | 1 cut(s) | 66 |
| Bsu15I | ATCGAT | 1 cut(s) | 300 |
| BsuTUI | ATCGAT | 1 cut(s) | 300 |
| BtgI | CCRYGG | 1 cut(s) | 114 |
| BtsCI | GGATG | 3 cut(s) | 87, 292, 553 |
| BtsIMutI | CAGTG | 1 cut(s) | 255 |
| Cac8I | GCNNGC | 2 cut(s) | 323, 554 |
| Cfr13I | GGNCC | 1 cut(s) | 193 |
| ClaI | ATCGAT | 1 cut(s) | 300 |
| CseI | GACGC | 2 cut(s) | 506, 548 |
| CviAII | CATG | 1 cut(s) | 179 |
| DdeI | CTNAG | 1 cut(s) | 543 |
| DpnI | GATC | 4 cut(s) | 5, 68, 162, 234 |
| DpnII | GATC | 4 cut(s) | 3, 66, 160, 232 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 337 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 1 cut(s) | 524 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 2 cut(s) | 443, 501 |
| Eco88I | CYCGRG | 1 cut(s) | 189 |
| EcoRII | CCWGG | 1 cut(s) | 228 |
| EcoT14I | CCWWGG | 1 cut(s) | 524 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| ErhI | CCWWGG | 1 cut(s) | 524 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 4 cut(s) | 21, 180, 490, 492 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 36, 68 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FatI | CATG | 1 cut(s) | 178 |
| FauNDI | CATATG | 1 cut(s) | 490 |
| FokI | GGATG | 3 cut(s) | 74, 299, 560 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| FspBI | CTAG | 2 cut(s) | 350, 525 |
| GsaI | CCCAGC | 1 cut(s) | 379 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HapII | CCGG | 3 cut(s) | 95, 196, 455 |
| HgaI | GACGC | 2 cut(s) | 506, 548 |
| Hin1II | CATG | 1 cut(s) | 182 |
| HindIII | AAGCTT | 1 cut(s) | 50 |
| HinfI | GANTC | 5 cut(s) | 27, 218, 290, 442, 458 |
| HpaII | CCGG | 3 cut(s) | 95, 196, 455 |
| HphI | GGTGA | 1 cut(s) | 475 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 295, 481 |
| Hpy188III | TCNNGA | 4 cut(s) | 152, 265, 281, 455 |
| Hpy99I | CGWCG | 1 cut(s) | 522 |
| HpyAV | CCTTC | 3 cut(s) | 396, 461, 476 |
| HpyCH4III | ACNGT | 2 cut(s) | 118, 307 |
| HpyCH4V | TGCA | 1 cut(s) | 439 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 350 |
| HpyF3I | CTNAG | 1 cut(s) | 543 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| Kpn2I | TCCGGA | 1 cut(s) | 454 |
| Kzo9I | GATC | 4 cut(s) | 3, 66, 160, 232 |
| LmnI | GCTCC | 2 cut(s) | 256, 561 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeI | CTAG | 2 cut(s) | 350, 525 |
| MaeIII | GTNAC | 1 cut(s) | 463 |
| MalI | GATC | 4 cut(s) | 5, 68, 162, 234 |
| MboI | GATC | 4 cut(s) | 3, 66, 160, 232 |
| MboII | GAAGA | 1 cut(s) | 436 |
| MflI | RGATCY | 1 cut(s) | 66 |
| MhlI | GDGCHC | 2 cut(s) | 323, 451 |
| MlyI | GAGTC | 3 cut(s) | 212, 299, 467 |
| MroI | TCCGGA | 1 cut(s) | 454 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspI | CCGG | 3 cut(s) | 95, 196, 455 |
| MspR9I | CCNGG | 2 cut(s) | 96, 230 |
| MvaI | CCWGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 350 |
| NciI | CCSGG | 1 cut(s) | 96 |
| NdeI | CATATG | 1 cut(s) | 490 |
| NdeII | GATC | 4 cut(s) | 3, 66, 160, 232 |
| NlaIII | CATG | 1 cut(s) | 182 |
| NlaIV | GGNNCC | 1 cut(s) | 194 |
| NmuCI | GTSAC | 1 cut(s) | 463 |
| PfeI | GAWTC | 2 cut(s) | 27, 442 |
| PflFI | GACNNNGTC | 1 cut(s) | 469 |
| PleI | GAGTC | 3 cut(s) | 212, 298, 466 |
| PpsI | GAGTC | 3 cut(s) | 212, 298, 466 |
| Psp6I | CCWGG | 1 cut(s) | 228 |
| PspFI | CCCAGC | 1 cut(s) | 375 |
| PspGI | CCWGG | 1 cut(s) | 228 |
| PspN4I | GGNNCC | 1 cut(s) | 194 |
| PspPI | GGNCC | 1 cut(s) | 193 |
| PsuI | RGATCY | 1 cut(s) | 66 |
| PsyI | GACNNNGTC | 1 cut(s) | 469 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| Sau3AI | GATC | 4 cut(s) | 3, 66, 160, 232 |
| Sau96I | GGNCC | 1 cut(s) | 193 |
| SchI | GAGTC | 3 cut(s) | 212, 299, 467 |
| ScrFI | CCNGG | 2 cut(s) | 96, 230 |
| SduI | GDGCHC | 2 cut(s) | 323, 451 |
| SetI | ASST | 4 cut(s) | 54, 150, 159, 190 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| SspMI | CTAG | 2 cut(s) | 350, 525 |
| StyD4I | CCNGG | 2 cut(s) | 94, 228 |
| StyI | CCWWGG | 1 cut(s) | 524 |
| TaaI | ACNGT | 2 cut(s) | 118, 307 |
| TaqI | TCGA | 3 cut(s) | 221, 300, 398 |
| TfiI | GAWTC | 2 cut(s) | 27, 442 |
| TscAI | CASTG | 1 cut(s) | 262 |
| TseFI | GTSAC | 1 cut(s) | 463 |
| Tsp45I | GTSAC | 1 cut(s) | 463 |
| TspRI | CASTG | 1 cut(s) | 262 |
| Tth111I | GACNNNGTC | 1 cut(s) | 469 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 121 |
| XmaJI | CCTAGG | 1 cut(s) | 524 |
| XspI | CTAG | 2 cut(s) | 350, 525 |