Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

14144538 .. 14145797

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22221.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTCCCTCTCCCATTAAATCCTGATGAAATTGGTTTCTCTGTCACTGCTACTCGAGAGTTAGAAATTACGAGGACAGGGAAGTCCCAAAGAAAAAGGGGCCACCCTTGTGGCGGCCGCAACAAAAAGAAGCAAGCTGGGGAGGTTTCAGATTTCATGGCTCTAGGGACAACAACGTCTTCAGCTACTCGTTCCCTCAACACTCGAGCCACACAACACGTGGCACTCGAGCTCCGTACAAACTCCCGGCAAAATCTGAAGCTCGTCAAATTCCTATCCCAAAATCACTCCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

10.94

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	82, 175
AciI	CCGC	2 cut(s)	114, 118
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	165, 278
AcvI	CACGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	217
AleI	CACNNNNGTG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	137, 185, 232, 262
AluI	AGCT	4 cut(s)	137, 185, 232, 262
Alw21I	GWGCWC	1 cut(s)	234
Ama87I	CYCGRG	3 cut(s)	54, 204, 227
AoxI	GGCC	2 cut(s)	100, 115
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	4, 100
AsuC2I	CCSGG	1 cut(s)	247
AvaI	CYCGRG	3 cut(s)	54, 204, 227
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	247
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	115, 118
BlsI	GCNGC	2 cut(s)	116, 119
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	3 cut(s)	54, 204, 227
BmgT120I	GGNCC	2 cut(s)	4, 100
BmiI	GGNNCC	2 cut(s)	6, 101
BmrFI	CCNGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	280
BseX3I	CGGCCG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	102, 117
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	3 cut(s)	54, 204, 227
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	70, 181
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	70, 181
BsnI	GGCC	2 cut(s)	102, 117
BsoBI	CYCGRG	3 cut(s)	54, 204, 227
Bsp1286I	GDGCHC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	114, 118
BspANI	GGCC	2 cut(s)	102, 117
BspLI	GGNNCC	2 cut(s)	6, 101
BssSI	CACGAG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	135
BstMCI	CGRYCG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	102, 117
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	135
CciNI	GCGGCCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	4, 100
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	8 cut(s)	102, 117, 137, 161, 185, 209, 232, 262
CviKI_1	RGCY	8 cut(s)	102, 117, 137, 161, 185, 209, 232, 262
CviQI	GTAC	1 cut(s)	237
DrdI	GACNNNNNNGTC	2 cut(s)	82, 175
DseDI	GACNNNNNNGTC	2 cut(s)	82, 175
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	165, 278
Eco72I	CACGTG	1 cut(s)	220
Eco88I	CYCGRG	3 cut(s)	54, 204, 227
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FaqI	GGGAC	2 cut(s)	70, 181
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	115, 118
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	115, 118
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	115, 118
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	102, 117
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	1 cut(s)	160
HpaII	CCGG	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	151, 258
Hpy188III	TCNNGA	3 cut(s)	23, 56, 294
HpyCH4IV	ACGT	2 cut(s)	176, 219
HpySE526I	ACGT	2 cut(s)	176, 219
Hsp92II	CATG	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	4 cut(s)	36, 63, 123, 260
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	176, 219
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	30, 66, 269
MnlI	CCTC	4 cut(s)	18, 66, 136, 206
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	247
NciI	CCSGG	1 cut(s)	247
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	6, 101
NmuCI	GTSAC	1 cut(s)	43
NotI	GCGGCCGC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	108
PaeR7I	CTCGAG	3 cut(s)	54, 204, 227
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	116, 119
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	6, 101
PspPI	GGNCC	2 cut(s)	4, 100
PspXI	VCTCGAGB	2 cut(s)	204, 227
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	115, 118
Sau96I	GGNCC	2 cut(s)	4, 100
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	7 cut(s)	139, 147, 179, 187, 222, 234, 264
Sfr274I	CTCGAG	3 cut(s)	54, 204, 227
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	3 cut(s)	54, 204, 227
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	3 cut(s)	54, 204, 227
SmoI	CTYRAG	3 cut(s)	54, 204, 227
Sse9I	AATT	3 cut(s)	30, 66, 269
SsiI	CCGC	2 cut(s)	114, 118
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	245
TaiI	ACGT	2 cut(s)	179, 222
TaqI	TCGA	3 cut(s)	55, 205, 228
TasI	AATT	3 cut(s)	30, 66, 269
TauI	GCSGC	2 cut(s)	117, 120
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	42, 145
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XhoI	CTCGAG	3 cut(s)	54, 204, 227
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.