Rmu_sc0004109.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004109.1
OG0000172
Physical Location & Seq
Reverse (-)
24472 .. 30343
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004109.1_g000008.1.cds

Sequence Viewer

Length: 1791 bp
atgtcttcttcctcgctgaaaccagcttccatcatcttcgctgcaagaatacagcgtctgccaggcctctctcaccattccgtcggccaaccagactggctagtcatcatcaccggcggccacccagcaaccggcggacatccaaaccagcagcacctagagttttgtgcggcgtcccggttcatggctgctgctattgcctccatgactaccaggctagcgaccaaattatcgcttagagagggtgaagaacctgtggatttggggaaccatagggttccggggaaggagtttctcgctcgtcacttttacttgccacgaggtgatcgttttctgtttacgttcacccatatacgtgatgtcgctagtgtgaagaagggaggtctgtggggctttcaacgtgctatgatcttgttgaatgattatgatggcttctcagagattcttgcggtgaagcttgattttttttggatttgggttgtgcttcagggcatcccacagggcatcttgatggaacccacggtctggctagtgggaggaatgattggagaggttttggaggtggaccgtgtggccctgcatcgtggggaagctcaggtccgacttactttacccatcaacgacccggtatgcctggaccgtagggttagggtttctcctgttgacgtcttcacattgtggttcaggtatgagaggcttctggggcggtgcaggctgtgcgccctgctgaatcatggagggcacagatgccctatgaagtatgaggtggagatcgacattgtgggggaggtgggctcgctgcaggcactgggtccggcacttccagccctcgtgtttagggctaacgcccagccttctctttccctgctttcgactttcaaggtgcctagcatgctgaagaagaaacatgtgcagatttggcctcctccaaagctggtgtcttcgcatgggtctgaaggaaattctgctgcggctccagtggttggagtatgttgtcctagggaggaggaggaccctgaggagagtaaaatggctaaacatggtttagctcttgtcccggctactctgcaaccagaaaatttagggctggaattttcctctgatggtttggtggaggtggaggtgaaggtgacatctcatgccaaggtctacaagaagaagggtaggcctcggggacagagaaacaaggtcaaggtagcagcgtctgtctgtggaggctcggagttcatggtttcagtttcaactggggatggtcctgacagtgtgcatggtgggcatgagggggcggtggctcttcttgtttccagtgacgtacaccacaagggtcttaggcgtcaaaaggatcaaggagccctatgctggcttactgtccccgcagccctacactcgctcgctcgctgccccggtagctcctatgctcccctgcgcttgcttctcccagcgagcgcgccctgcatctaccccagcagccacgtagccccgcgaccctacagcacccgcagcctacccccacagctcccacgttcagctagcctcgcccaaagctcgcctgcctcacacatccccgcagcctgttttccaacacgcctgcatcaacacgcgcgtgacatgcttacttctgaacatagagatacgagaaaggcgattgaagctaaagccatcattctcatgacaaggcacatgaatgacgtgctccagaatgagtacctcaatgaggaagacccaagaaaactatgggtagaacttgagcagcgttttggcaacttccgtgattcctgcttccagacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

596

Amino Acids

65.59

Weight (kDa)

9.09

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 883
AccB7I CCANNNNNTGG 2 cut(s) 525, 983
AccI GTMKAC 1 cut(s) 1149
AccII CGCG 4 cut(s) 1448, 1483, 1601, 1603
AclWI GGATC 1 cut(s) 1350
AcoI YGGCCR 2 cut(s) 85, 118
AcsI RAATTY 3 cut(s) 961, 1078, 1091
AcuI CTGAAG 3 cut(s) 470, 917, 975
AcyI GRCGYC 3 cut(s) 173, 666, 1333
AdeI CACNNNGTG 2 cut(s) 323, 678
AfaI GTAC 2 cut(s) 1314, 1706
AfiI CCNNNNNNNGG 6 cut(s) 131, 184, 525, 983, 1359, 1714
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 5 cut(s) 398, 418, 880, 1242, 1649
AjiI CACGTC 1 cut(s) 1690
AjnI CCWGG 3 cut(s) 61, 212, 633
AleI CACNNNNGTG 1 cut(s) 1602
Alw21I GWGCWC 1 cut(s) 1695
AlwI GGATC 1 cut(s) 1350
AlwNI CAGNNNCTG 3 cut(s) 58, 808, 1205
Ama87I CYCGRG 1 cut(s) 1170
AoxI GGCC 6 cut(s) 64, 85, 118, 573, 920, 1166
ApoI RAATTY 3 cut(s) 961, 1078, 1091
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AspA2I CCTAGG 1 cut(s) 998
AspLEI GCGC 5 cut(s) 722, 1428, 1448, 1450, 1603
AspS9I GGNCC 7 cut(s) 565, 574, 598, 637, 812, 1012, 1253
AsuC2I CCSGG 5 cut(s) 178, 282, 626, 1058, 1404
AsuHPI GGTGA 8 cut(s) 65, 103, 257, 335, 337, 463, 1135, 1141
AsuNHI GCTAGC 2 cut(s) 217, 1529
AvaI CYCGRG 1 cut(s) 1170
AvaII GGWCC 6 cut(s) 565, 598, 637, 812, 1012, 1253
AvrII CCTAGG 1 cut(s) 998
AxyI CCTNAGG 1 cut(s) 1017
BaeGI GKGCMC 1 cut(s) 744
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 797, 1354
BauI CACGAG 2 cut(s) 318, 830
BbsI GAAGAC 3 cut(s) 661, 933, 1725
Bbv12I GWGCWC 1 cut(s) 1695
BccI CCATC 7 cut(s) 38, 422, 505, 623, 1097, 1244, 1667
BciT130I CCWGG 3 cut(s) 63, 214, 635
BcnI CCSGG 5 cut(s) 178, 282, 626, 1058, 1404
BfaI CTAG 8 cut(s) 101, 158, 218, 366, 530, 888, 999, 1530
BfmI CTRYAG 2 cut(s) 800, 1489
BlnI CCTAGG 1 cut(s) 998
Bme1390I CCNGG 8 cut(s) 63, 178, 214, 282, 626, 635, 1058, 1404
Bme18I GGWCC 6 cut(s) 565, 598, 637, 812, 1012, 1253
BmeT110I CYCGRG 1 cut(s) 1170
BmgBI CACGTC 1 cut(s) 1690
BmgT120I GGNCC 7 cut(s) 565, 574, 598, 637, 812, 1012, 1253
BmiI GGNNCC 8 cut(s) 269, 279, 516, 813, 885, 975, 1014, 1351
BmrFI CCNGG 8 cut(s) 63, 178, 214, 282, 626, 635, 1058, 1404
BmrI ACTGGG 2 cut(s) 818, 1254
BmsI GCATC 6 cut(s) 501, 513, 589, 737, 1464, 1600
BmtI GCTAGC 2 cut(s) 221, 1533
BmuI ACTGGG 2 cut(s) 818, 1254
BpiI GAAGAC 3 cut(s) 661, 933, 1725
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpmI CTGGAG 2 cut(s) 960, 1679
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 1766
BpuMI CCSGG 5 cut(s) 178, 282, 626, 1058, 1404
BsaAI YACGTR 2 cut(s) 356, 1474
BsaHI GRCGYC 3 cut(s) 173, 666, 1333
BsaJI CCNNGG 6 cut(s) 281, 519, 998, 1143, 1169, 1402
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 184, 525, 983, 1359, 1714
Bse118I RCCGGY 2 cut(s) 113, 131
Bse1I ACTGG 5 cut(s) 101, 813, 977, 1249, 1305
Bse21I CCTNAGG 1 cut(s) 1017
BseBI CCWGG 3 cut(s) 63, 214, 635
BseDI CCNNGG 6 cut(s) 281, 519, 998, 1143, 1169, 1402
BseGI GGATG 4 cut(s) 139, 492, 1255, 1560
BseLI CCNNNNNNNGG 6 cut(s) 131, 184, 525, 983, 1359, 1714
BseMII CTCAG 3 cut(s) 450, 608, 1008
BseNI ACTGG 5 cut(s) 101, 813, 977, 1249, 1305
BsePI GCGCGC 1 cut(s) 1446
BseRI GAGGAG 4 cut(s) 915, 1019, 1022, 1034
BseSI GKGCMC 1 cut(s) 744
BseYI CCCAGC 4 cut(s) 124, 849, 1438, 1463
BsgI GTGCAG 2 cut(s) 730, 932
Bsh1236I CGCG 4 cut(s) 1448, 1483, 1601, 1603
BshFI GGCC 6 cut(s) 66, 87, 120, 575, 922, 1168
BshNI GGYRCC 1 cut(s) 883
BsiHKAI GWGCWC 1 cut(s) 1695
BsiHKCI CYCGRG 1 cut(s) 1170
BsiSI CCGG 8 cut(s) 114, 132, 178, 281, 626, 815, 1058, 1404
BslFI GGGAC 4 cut(s) 160, 1040, 1188, 1355
BslI CCNNNNNNNGG 6 cut(s) 131, 184, 525, 983, 1359, 1714
BsmFI GGGAC 4 cut(s) 160, 1040, 1188, 1355
BsnI GGCC 6 cut(s) 66, 87, 120, 575, 922, 1168
BsoBI CYCGRG 1 cut(s) 1170
Bsp1286I GDGCHC 4 cut(s) 744, 797, 1354, 1695
Bsp143I GATC 4 cut(s) 325, 408, 771, 1342
BspANI GGCC 6 cut(s) 66, 87, 120, 575, 922, 1168
BspCNI CTCAG 3 cut(s) 449, 607, 1009
BspFNI CGCG 4 cut(s) 1448, 1483, 1601, 1603
BspHI TCATGA 1 cut(s) 1668
BspLI GGNNCC 8 cut(s) 269, 279, 516, 813, 885, 975, 1014, 1351
BspMAI CTGCAG 1 cut(s) 804
BspOI GCTAGC 2 cut(s) 221, 1533
BspPI GGATC 1 cut(s) 1350
BspQI GCTCTTC 1 cut(s) 1299
BspT107I GGYRCC 1 cut(s) 883
BsrFI RCCGGY 2 cut(s) 113, 131
BsrI ACTGG 5 cut(s) 101, 813, 977, 1249, 1305
BssAI RCCGGY 2 cut(s) 113, 131
BssECI CCNNGG 6 cut(s) 281, 519, 998, 1143, 1169, 1402
BssHII GCGCGC 1 cut(s) 1446
BssMI GATC 4 cut(s) 325, 408, 771, 1342
BssNI GRCGYC 3 cut(s) 173, 666, 1333
BssSI CACGAG 2 cut(s) 318, 830
BssT1I CCWWGG 2 cut(s) 998, 1143
Bst2BI CACGAG 2 cut(s) 318, 830
Bst2UI CCWGG 3 cut(s) 63, 214, 635
Bst4CI ACNGT 5 cut(s) 523, 569, 641, 1262, 1369
Bst6I CTCTTC 1 cut(s) 1299
BstACI GRCGYC 3 cut(s) 173, 666, 1333
BstAPI GCANNNNNTGC 1 cut(s) 717
BstBAI YACGTR 2 cut(s) 356, 1474
BstDEI CTNAG 6 cut(s) 236, 436, 594, 1017, 1328, 1788
BstDSI CCRYGG 1 cut(s) 519
BstENI CCTNNNNNAGG 1 cut(s) 1712
BstF5I GGATG 4 cut(s) 139, 492, 1255, 1560
BstFNI CGCG 4 cut(s) 1448, 1483, 1601, 1603
BstHHI GCGC 5 cut(s) 722, 1428, 1448, 1450, 1603
BstKTI GATC 4 cut(s) 328, 411, 774, 1345
BstMBI GATC 4 cut(s) 325, 408, 771, 1342
BstNI CCWGG 3 cut(s) 63, 214, 635
BstNSI RCATGY 3 cut(s) 895, 911, 1612
BstSCI CCNGG 8 cut(s) 61, 176, 212, 280, 624, 633, 1056, 1402
BstSFI CTRYAG 2 cut(s) 800, 1489
BstSLI GKGCMC 1 cut(s) 744
BstUI CGCG 4 cut(s) 1448, 1483, 1601, 1603
BstV2I GAAGAC 3 cut(s) 661, 933, 1725
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 6 cut(s) 66, 87, 120, 575, 922, 1168
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 1690
BtsCI GGATG 4 cut(s) 139, 492, 1255, 1560
BtsIMutI CAGTG 4 cut(s) 806, 984, 1267, 1312
CaiI CAGNNNCTG 3 cut(s) 58, 808, 1205
CciI TCATGA 1 cut(s) 1668
CfoI GCGC 5 cut(s) 722, 1428, 1448, 1450, 1603
Cfr10I RCCGGY 2 cut(s) 113, 131
Cfr13I GGNCC 7 cut(s) 565, 574, 598, 637, 812, 1012, 1253
CseI GACGC 4 cut(s) 44, 162, 1191, 1322
Csp6I GTAC 2 cut(s) 1313, 1705
CviQI GTAC 2 cut(s) 1313, 1705
DdeI CTNAG 6 cut(s) 236, 436, 594, 1017, 1328, 1788
DpnI GATC 4 cut(s) 327, 410, 773, 1344
DpnII GATC 4 cut(s) 325, 408, 771, 1342
DraIII CACNNNGTG 2 cut(s) 323, 678
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 85, 118
Eam1104I CTCTTC 1 cut(s) 1299
EarI CTCTTC 1 cut(s) 1299
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 998, 1143
Eco147I AGGCCT 2 cut(s) 66, 1168
Eco24I GRGCYC 2 cut(s) 797, 1354
Eco47I GGWCC 6 cut(s) 565, 598, 637, 812, 1012, 1253
Eco57I CTGAAG 3 cut(s) 470, 917, 975
Eco81I CCTNAGG 1 cut(s) 1017
Eco88I CYCGRG 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 1712
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRII CCWGG 3 cut(s) 61, 212, 633
EcoT14I CCWWGG 2 cut(s) 998, 1143
EcoT38I GRGCYC 2 cut(s) 797, 1354
ErhI CCWWGG 2 cut(s) 998, 1143
FaqI GGGAC 4 cut(s) 160, 1040, 1188, 1355
FauI CCCGC 4 cut(s) 1381, 1488, 1505, 1573
FblI GTMKAC 1 cut(s) 1149
FokI GGATG 4 cut(s) 126, 479, 1262, 1547
FriOI GRGCYC 2 cut(s) 797, 1354
FspBI CTAG 8 cut(s) 101, 158, 218, 366, 530, 888, 999, 1530
GlaI GCGC 5 cut(s) 721, 1427, 1447, 1449, 1602
GsaI CCCAGC 4 cut(s) 128, 853, 1442, 1467
GsuI CTGGAG 2 cut(s) 960, 1679
HaeIII GGCC 6 cut(s) 66, 87, 120, 575, 922, 1168
HapII CCGG 8 cut(s) 114, 132, 178, 281, 626, 815, 1058, 1404
HgaI GACGC 4 cut(s) 44, 162, 1191, 1322
HhaI GCGC 5 cut(s) 722, 1428, 1448, 1450, 1603
Hin1I GRCGYC 3 cut(s) 173, 666, 1333
Hin6I GCGC 5 cut(s) 720, 1426, 1446, 1448, 1601
HinP1I GCGC 5 cut(s) 720, 1426, 1446, 1448, 1601
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 442, 730, 1772
HpaII CCGG 8 cut(s) 114, 132, 178, 281, 626, 815, 1058, 1404
HphI GGTGA 8 cut(s) 65, 103, 257, 335, 337, 463, 1135, 1141
Hpy166II GTNNAC 6 cut(s) 339, 345, 565, 664, 1150, 1315
Hpy188I TCNGA 6 cut(s) 439, 602, 955, 1102, 1222, 1621
Hpy188III TCNNGA 5 cut(s) 508, 1256, 1669, 1696, 1783
Hpy8I GTNNAC 6 cut(s) 339, 345, 565, 664, 1150, 1315
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 6 cut(s) 280, 370, 864, 950, 1120, 1153
HpyCH4III ACNGT 5 cut(s) 523, 569, 641, 1262, 1369
HpyCH4IV ACGT 8 cut(s) 341, 355, 400, 666, 1311, 1473, 1522, 1689
HpyCH4V TGCA 9 cut(s) 44, 580, 711, 802, 913, 1069, 1267, 1455, 1591
HpyF3I CTNAG 6 cut(s) 236, 436, 594, 1017, 1328, 1788
HpySE526I ACGT 8 cut(s) 341, 355, 400, 666, 1311, 1473, 1522, 1689
Hsp92I GRCGYC 3 cut(s) 173, 666, 1333
HspAI GCGC 5 cut(s) 720, 1426, 1446, 1448, 1601
Kzo9I GATC 4 cut(s) 325, 408, 771, 1342
LguI GCTCTTC 1 cut(s) 1299
LmnI GCTCC 6 cut(s) 979, 1349, 1415, 1423, 1521, 1698
LweI GCATC 6 cut(s) 501, 513, 589, 737, 1464, 1600
MaeI CTAG 8 cut(s) 101, 158, 218, 366, 530, 888, 999, 1530
MaeII ACGT 8 cut(s) 341, 355, 400, 666, 1311, 1473, 1522, 1689
MaeIII GTNAC 4 cut(s) 302, 1129, 1307, 1604
MalI GATC 4 cut(s) 327, 410, 773, 1344
MboI GATC 4 cut(s) 325, 408, 771, 1342
MhlI GDGCHC 4 cut(s) 744, 797, 1354, 1695
MluCI AATT 4 cut(s) 227, 961, 1078, 1091
MmeI TCCRAC 3 cut(s) 625, 964, 1604
MslI CAYNNNNRTG 5 cut(s) 354, 509, 1602, 1667, 1683
MspI CCGG 8 cut(s) 114, 132, 178, 281, 626, 815, 1058, 1404
MspR9I CCNGG 8 cut(s) 63, 178, 214, 282, 626, 635, 1058, 1404
MvaI CCWGG 3 cut(s) 63, 214, 635
MvnI CGCG 4 cut(s) 1448, 1483, 1601, 1603
NciI CCSGG 5 cut(s) 178, 282, 626, 1058, 1404
NdeII GATC 4 cut(s) 325, 408, 771, 1342
NheI GCTAGC 2 cut(s) 217, 1529
NlaIV GGNNCC 8 cut(s) 269, 279, 516, 813, 885, 975, 1014, 1351
NmuCI GTSAC 4 cut(s) 302, 1129, 1307, 1604
NspI RCATGY 3 cut(s) 895, 911, 1612
OliI CACNNNNGTG 1 cut(s) 1602
PaeI GCATGC 1 cut(s) 895
PagI TCATGA 1 cut(s) 1668
PauI GCGCGC 1 cut(s) 1446
PceI AGGCCT 2 cut(s) 66, 1168
PciI ACATGT 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 1299
PcsI WCGNNNNNNNCGW 2 cut(s) 325, 1640
PfeI GAWTC 3 cut(s) 442, 730, 1772
PflMI CCANNNNNTGG 2 cut(s) 525, 983
Ppu21I YACGTR 2 cut(s) 356, 1474
PpuMI RGGWCCY 1 cut(s) 1012
PscI ACATGT 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 1012
Psp6I CCWGG 3 cut(s) 61, 212, 633
PspFI CCCAGC 4 cut(s) 124, 849, 1438, 1463
PspGI CCWGG 3 cut(s) 61, 212, 633
PspN4I GGNNCC 8 cut(s) 269, 279, 516, 813, 885, 975, 1014, 1351
PspPI GGNCC 7 cut(s) 565, 574, 598, 637, 812, 1012, 1253
PspPPI RGGWCCY 1 cut(s) 1012
PstI CTGCAG 1 cut(s) 804
PstNI CAGNNNCTG 3 cut(s) 58, 808, 1205
PteI GCGCGC 1 cut(s) 1446
RsaI GTAC 2 cut(s) 1314, 1706
RsaNI GTAC 2 cut(s) 1313, 1705
RseI CAYNNNNRTG 5 cut(s) 354, 509, 1602, 1667, 1683
SapI GCTCTTC 1 cut(s) 1299
Sau3AI GATC 4 cut(s) 325, 408, 771, 1342
Sau96I GGNCC 7 cut(s) 565, 574, 598, 637, 812, 1012, 1253
ScrFI CCNGG 8 cut(s) 63, 178, 214, 282, 626, 635, 1058, 1404
SduI GDGCHC 4 cut(s) 744, 797, 1354, 1695
SfaNI GCATC 6 cut(s) 501, 513, 589, 737, 1464, 1600
SfcI CTRYAG 2 cut(s) 800, 1489
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 6 cut(s) 565, 598, 637, 812, 1012, 1253
SmiMI CAYNNNNRTG 5 cut(s) 354, 509, 1602, 1667, 1683
SmlI CTYRAG 1 cut(s) 1745
SmoI CTYRAG 1 cut(s) 1745
SphI GCATGC 1 cut(s) 895
Sse9I AATT 4 cut(s) 227, 961, 1078, 1091
SseBI AGGCCT 2 cut(s) 66, 1168
SspMI CTAG 8 cut(s) 101, 158, 218, 366, 530, 888, 999, 1530
StuI AGGCCT 2 cut(s) 66, 1168
StyD4I CCNGG 8 cut(s) 61, 176, 212, 280, 624, 633, 1056, 1402
StyI CCWWGG 2 cut(s) 998, 1143
TaaI ACNGT 5 cut(s) 523, 569, 641, 1262, 1369
TaiI ACGT 8 cut(s) 344, 358, 403, 669, 1314, 1476, 1525, 1692
TaqI TCGA 2 cut(s) 774, 872
TasI AATT 4 cut(s) 227, 961, 1078, 1091
TauI GCSGC 3 cut(s) 120, 173, 974
TfiI GAWTC 3 cut(s) 442, 730, 1772
TscAI CASTG 4 cut(s) 813, 984, 1267, 1312
TseFI GTSAC 4 cut(s) 302, 1129, 1307, 1604
Tsp45I GTSAC 4 cut(s) 302, 1129, 1307, 1604
TspDTI ATGAA 4 cut(s) 172, 770, 1216, 1697
TspGWI ACGGA 2 cut(s) 70, 1757
TspRI CASTG 4 cut(s) 813, 984, 1267, 1312
Van91I CCANNNNNTGG 2 cut(s) 525, 983
VpaK11BI GGWCC 6 cut(s) 565, 598, 637, 812, 1012, 1253
XagI CCTNNNNNAGG 1 cut(s) 1712
XapI RAATTY 3 cut(s) 961, 1078, 1091
XceI RCATGY 3 cut(s) 895, 911, 1612
XcmI CCANNNNNNNNNTGG 1 cut(s) 1731
XmaJI CCTAGG 1 cut(s) 998
XmiI GTMKAC 1 cut(s) 1149
XspI CTAG 8 cut(s) 101, 158, 218, 366, 530, 888, 999, 1530
ZraI GACGTC 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.