Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

18002527 .. 18009195

Gene Structure 6669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACAAAACGTACAATTCCCATTACACAATGTTTGCATTTCAATTCCATACATGACTTTCCTTATGGGTCCCGCCCTACTCTTGTTTTCCGGGGGAATGCAACGCCGTCTCTGCTGGCGGCTTTCATCCCTAAGATCTGTCTCTCCACTCTGCTACGCAAAGAGAAGAAAGGCATTACCATTCGAGCCTTACCTATAGGAGTGGTGGATCCGATTAGGGTTACTGGCTCATGCTGTCGAAGGGAGGACGAGGAGGATACATATGGAAAGCGGGCTAGGCGTGCTCATGCTTTGGCCTTGGTTTTGTCAACCCTTCAGTTGGAGGACATAAGGTTTATAGTGACGCAGGAGGGCCCTGTTGAGGTTAGTGTTACTTCGAAGGGGAAGAGCTCAAAGAAAAGGGGACGACCCTGTGGCAGTAGGAACAGTCCTAAGCAAGCGTTGAAACCTAAGGACGGAGAGTCGATCGTGACCGGGTTGGTGGCTTCAGATCTTAGTGCTCATAGTGATGTGGATGTGGCACATGTCCCTTGTGCTAAGGAGAACTATGTTGTAGGCTACACATTACTCAGGCCAAGGCTGTTACTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

196

Amino Acids

21.52

Weight (kDa)

9.78

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	73, 119, 271
AclWI	GGATC	2 cut(s)	203, 216
AcuI	CTGAAG	2 cut(s)	299, 471
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	3 cut(s)	319, 361, 455
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	43, 445
AhdI	GACNNNNNGTC	1 cut(s)	460
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	3 cut(s)	286, 392, 502
Alw26I	GTCTC	2 cut(s)	114, 146
AlwI	GGATC	2 cut(s)	203, 216
AoxI	GGCC	3 cut(s)	294, 352, 572
ApaI	GGGCCC	1 cut(s)	356
AspS9I	GGNCC	3 cut(s)	69, 352, 353
AsuC2I	CCSGG	2 cut(s)	92, 475
AsuII	TTCGAA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	356, 392
Bbv12I	GWGCWC	3 cut(s)	286, 392, 502
BceAI	ACGGC	1 cut(s)	91
BciVI	GTATCC	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	92, 475
BcoDI	GTCTC	2 cut(s)	114, 146
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	2 cut(s)	135, 490
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	92, 475
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgT120I	GGNCC	3 cut(s)	69, 352, 353
BmiI	GGNNCC	4 cut(s)	70, 71, 210, 354
BmrFI	CCNGG	2 cut(s)	92, 475
Bpu10I	CCTNAGC	2 cut(s)	432, 537
Bpu14I	TTCGAA	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	92, 475
BsaJI	CCNNGG	3 cut(s)	91, 297, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 361, 455
Bse1I	ACTGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	91, 297, 575
BseGI	GGATG	2 cut(s)	126, 520
BseLI	CCNNNNNNNGG	3 cut(s)	319, 361, 455
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	296, 354, 574
BsiEI	CGRYCG	1 cut(s)	468
BsiHKAI	GWGCWC	3 cut(s)	286, 392, 502
BsiSI	CCGG	2 cut(s)	91, 474
BslFI	GGGAC	3 cut(s)	55, 417, 512
BslI	CCNNNNNNNGG	3 cut(s)	319, 361, 455
BsmAI	GTCTC	2 cut(s)	114, 146
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	3 cut(s)	55, 417, 512
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	296, 354, 574
Bsp119I	TTCGAA	1 cut(s)	377
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	286, 356, 392, 502
Bsp143I	GATC	4 cut(s)	135, 208, 465, 490
BspACI	CCGC	3 cut(s)	73, 119, 271
BspANI	GGCC	3 cut(s)	296, 354, 574
BspCNI	CTCAG	1 cut(s)	582
BspLI	GGNNCC	4 cut(s)	70, 71, 210, 354
BspPI	GGATC	2 cut(s)	203, 216
BspQI	GCTCTTC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	91, 297, 575
BssMI	GATC	4 cut(s)	135, 208, 465, 490
BssT1I	CCWWGG	2 cut(s)	297, 575
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	117, 273, 282, 438
BstDEI	CTNAG	6 cut(s)	132, 432, 450, 494, 537, 569
BstF5I	GGATG	2 cut(s)	126, 520
BstKTI	GATC	4 cut(s)	138, 211, 468, 493
BstMAI	GTCTC	2 cut(s)	114, 146
BstMBI	GATC	4 cut(s)	135, 208, 465, 490
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 277, 281
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	90, 473
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	356
BstX2I	RGATCY	3 cut(s)	135, 208, 490
BstYI	RGATCY	3 cut(s)	135, 208, 490
Bsu36I	CCTNAGG	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	296, 354, 574
BtsCI	GGATG	2 cut(s)	126, 520
Cac8I	GCNNGC	4 cut(s)	117, 273, 282, 438
Cfr13I	GGNCC	3 cut(s)	69, 352, 353
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	4 cut(s)	53, 231, 287, 524
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	6 cut(s)	132, 432, 450, 494, 537, 569
DpnI	GATC	4 cut(s)	137, 210, 467, 492
DpnII	GATC	4 cut(s)	135, 208, 465, 490
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	297, 575
Eco24I	GRGCYC	2 cut(s)	356, 392
Eco47I	GGWCC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	299, 471
Eco81I	CCTNAGG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	390
EcoO109I	RGGNCCY	3 cut(s)	69, 352, 353
EcoT14I	CCWWGG	2 cut(s)	297, 575
EcoT38I	GRGCYC	2 cut(s)	356, 392
ErhI	CCWWGG	2 cut(s)	297, 575
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	4 cut(s)	56, 234, 290, 527
FaqI	GGGAC	3 cut(s)	55, 417, 512
FatI	CATG	4 cut(s)	52, 230, 286, 523
FauI	CCCGC	2 cut(s)	80, 264
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	113, 527
FriOI	GRGCYC	2 cut(s)	356, 392
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	296, 354, 574
HapII	CCGG	2 cut(s)	91, 474
HgaI	GACGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	56, 234, 290, 527
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	2 cut(s)	91, 474
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	213, 490
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	234, 323, 373
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	37, 101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 277, 281
HpyF3I	CTNAG	6 cut(s)	132, 432, 450, 494, 537, 569
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	56, 234, 290, 527
KflI	GGGWCCC	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	135, 208, 465, 490
LguI	GCTCTTC	1 cut(s)	380
LpnPI	CCDG	8 cut(s)	101, 104, 210, 332, 369, 424, 487, 556
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	5 cut(s)	220, 340, 370, 469, 582
MalI	GATC	4 cut(s)	137, 210, 467, 492
MboI	GATC	4 cut(s)	135, 208, 465, 490
MboII	GAAGA	2 cut(s)	178, 397
MflI	RGATCY	3 cut(s)	135, 208, 490
MhlI	GDGCHC	4 cut(s)	286, 356, 392, 502
MluCI	AATT	2 cut(s)	15, 43
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	238, 244, 247, 316, 343, 355
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	91, 474
MspR9I	CCNGG	2 cut(s)	92, 475
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	112, 277, 281
NciI	CCSGG	2 cut(s)	92, 475
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	4 cut(s)	135, 208, 465, 490
NlaIII	CATG	4 cut(s)	56, 234, 290, 527
NlaIV	GGNNCC	4 cut(s)	70, 71, 210, 354
NmuCI	GTSAC	2 cut(s)	340, 469
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	377
PciI	ACATGT	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	380
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	121
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	69
PscI	ACATGT	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	70, 71, 210, 354
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	3 cut(s)	69, 352, 353
PspPPI	RGGWCCY	1 cut(s)	69
PsuI	RGATCY	3 cut(s)	135, 208, 490
PvuI	CGATCG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	380
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	135, 208, 465, 490
Sau96I	GGNCC	3 cut(s)	69, 352, 353
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	92, 475
SduI	GDGCHC	4 cut(s)	286, 356, 392, 502
SetI	ASST	6 cut(s)	13, 196, 335, 366, 392, 451
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	2 cut(s)	15, 43
SsiI	CCGC	3 cut(s)	73, 119, 271
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	90, 473
StyI	CCWWGG	2 cut(s)	297, 575
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	4 cut(s)	184, 238, 377, 464
TasI	AATT	2 cut(s)	15, 43
TauI	GCSGC	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	340, 469
Tsp45I	GTSAC	2 cut(s)	340, 469
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	527
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.