Rmu_co8002714.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8002714.1
OG0000172
Physical Location & Seq
Reverse (-)
1 .. 454
454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8002714.1_g000001.1.cds

Sequence Viewer

Length: 393 bp
atggagtccttcaggagtgctgtgcggtcgatgtggaggctgtcggggacagtggagctccaaccacggggtgaacggtttctgtttactttcactcatgaaagggatgttgctcgtgtgaagaagggtggtccatggggctttcagcgcgctatgatccttctgaacgactatgatggcttctcagagatctctgctgtgaagctggattttgtttggatctgggttacactgcagggcatccctccgggtattttgacggaacctaccgtccggttggttggagggacgattggagaggttttggaggtgtaccggttggcgctgcgcaggagtgaagctcgtgtccggcttgttctctccatcaacgatccggtaaggctggatcgcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

131

Amino Acids

15.05

Weight (kDa)

10.22

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 329
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 151, 227, 365
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 3 cut(s) 58, 205, 341
AluI AGCT 3 cut(s) 58, 205, 341
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 3 cut(s) 151, 227, 365
ApeKI GCWGC 1 cut(s) 325
AsiGI ACCGGT 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 4 cut(s) 150, 152, 325, 330
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 60
BauI CACGAG 2 cut(s) 114, 342
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 170, 371
BcnI CCSGG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 326
BglII AGATCT 1 cut(s) 189
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 65, 134
BsaWI WCCGGW 3 cut(s) 273, 315, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 65, 134
BseGI GGATG 2 cut(s) 112, 240
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 5 cut(s) 248, 274, 316, 349, 374
BslFI GGGAC 2 cut(s) 61, 301
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 61, 301
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 5 cut(s) 156, 189, 219, 370, 385
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 3 cut(s) 151, 227, 365
BsrFI RCCGGY 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 65, 134
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 5 cut(s) 156, 189, 219, 370, 385
BssSI CACGAG 2 cut(s) 114, 342
BssT1I CCWWGG 1 cut(s) 134
Bst2BI CACGAG 2 cut(s) 114, 342
Bst4CI ACNGT 3 cut(s) 52, 78, 271
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 65, 134
BstF5I GGATG 2 cut(s) 112, 240
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 4 cut(s) 150, 152, 325, 330
BstKTI GATC 5 cut(s) 159, 192, 222, 373, 388
BstMBI GATC 5 cut(s) 156, 189, 219, 370, 385
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 233
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 189, 219
BstYI RGATCY 2 cut(s) 189, 219
BtgI CCRYGG 2 cut(s) 65, 134
BtsCI GGATG 2 cut(s) 112, 240
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 57, 230
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 97
CfoI GCGC 4 cut(s) 150, 152, 325, 330
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 313
CspAI ACCGGT 1 cut(s) 315
CviAII CATG 2 cut(s) 98, 135
CviJI RGCY 8 cut(s) 40, 58, 141, 180, 205, 341, 352, 382
CviKI_1 RGCY 8 cut(s) 40, 58, 141, 180, 205, 341, 352, 382
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 184
DpnI GATC 5 cut(s) 158, 191, 221, 372, 387
DpnII GATC 5 cut(s) 156, 189, 219, 370, 385
DraIII CACNNNGTG 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 2 cut(s) 101, 138
FaiI YATR 4 cut(s) 99, 136, 155, 174
FaqI GGGAC 2 cut(s) 61, 301
FatI CATG 2 cut(s) 97, 134
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 119, 227
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 326
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 4 cut(s) 149, 151, 324, 329
GluI GCNGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 326
HapII CCGG 5 cut(s) 248, 274, 316, 349, 374
HhaI GCGC 4 cut(s) 150, 152, 325, 330
Hin1II CATG 2 cut(s) 101, 138
Hin6I GCGC 4 cut(s) 148, 150, 323, 328
HinP1I GCGC 4 cut(s) 148, 150, 323, 328
HinfI GANTC 1 cut(s) 5
HpaII CCGG 5 cut(s) 248, 274, 316, 349, 374
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 74, 87, 313
Hpy188I TCNGA 2 cut(s) 165, 187
Hpy188III TCNNGA 2 cut(s) 13, 98
Hpy8I GTNNAC 3 cut(s) 74, 87, 313
HpyAV CCTTC 3 cut(s) 19, 118, 170
HpyCH4III ACNGT 3 cut(s) 52, 78, 271
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 2 cut(s) 101, 138
HspAI GCGC 4 cut(s) 148, 150, 323, 328
Kzo9I GATC 5 cut(s) 156, 189, 219, 370, 385
LmnI GCTCC 2 cut(s) 55, 63
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 226
MalI GATC 5 cut(s) 158, 191, 221, 372, 387
MboI GATC 5 cut(s) 156, 189, 219, 370, 385
MboII GAAGA 1 cut(s) 133
MflI RGATCY 2 cut(s) 189, 219
MhlI GDGCHC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 85, 262
MnlI CCTC 5 cut(s) 30, 255, 278, 292, 301
MroXI GAANNNNTTC 1 cut(s) 78
MspI CCGG 5 cut(s) 248, 274, 316, 349, 374
MspR9I CCNGG 1 cut(s) 249
MteI GCGCNGCGC 1 cut(s) 326
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 134
NdeII GATC 5 cut(s) 156, 189, 219, 370, 385
NlaIII CATG 2 cut(s) 101, 138
NlaIV GGNNCC 1 cut(s) 264
NsbI TGCGCA 1 cut(s) 329
PagI TCATGA 1 cut(s) 97
PauI GCGCGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 78
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 2 cut(s) 189, 219
PteI GCGCGC 1 cut(s) 148
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 5 cut(s) 156, 189, 219, 370, 385
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 60, 207, 268, 303, 312, 343
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 131
SsiI CCGC 1 cut(s) 25
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 3 cut(s) 52, 78, 271
TaqI TCGA 1 cut(s) 29
TscAI CASTG 2 cut(s) 57, 237
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 57, 237
VpaK11BI GGWCC 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.