Rh4BG252500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000172
Physical Location & Seq
Forward (+)
42289516 .. 42294226
4711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG252500.1

Sequence Viewer

Length: 369 bp
ATGCTCCTTTCCACTACCGAAATAGATTTTCTCCAATCCTGCAACGAACCTAGCAGAGTGATGAAGCAGAATAATTTTTTTTGCGTAAGCTTGCCAGCGAGGAAACTCTCCTTGAATCCGCTCTGGCATCGAAAGCCTTCCGCCTTCATCGACCGCGACCCCTCCCTCAAGTCCCTCATCTCCTGCCTCGACCTCGCCGCCAACCCCAACTCCCGATCCCTGCCGAACTCCGCTTCTCCTATCACCCTCCACCGCCGCCGCCGCCAACCCAACCCATCCTCTTCAATTTCTCAGCATCCAACCACCGAGCTCGAAGAAGAAGCAGACCCAGAAGAAGATTTTAAAAAAAAAATTGGTGATGAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

6.82

Isoelectric Point (pI)

81.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 156
AciI CCGC 9 cut(s) 119, 141, 154, 198, 231, 253, 256, 259, 262
AclWI GGATC 1 cut(s) 210
AgsI TTSAA 2 cut(s) 115, 285
AluBI AGCT 2 cut(s) 90, 310
AluI AGCT 2 cut(s) 90, 310
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 235, 368
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 283
BfaI CTAG 1 cut(s) 51
BisI GCNGC 4 cut(s) 198, 256, 259, 262
BlsI GCNGC 4 cut(s) 199, 257, 260, 263
BmsI GCATC 2 cut(s) 136, 304
BpuEI CTTGAG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
BseGI GGATG 2 cut(s) 275, 295
BseMII CTCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 9 cut(s) 119, 141, 154, 198, 231, 253, 256, 259, 262
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 1 cut(s) 156
BspPI GGATC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 121
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 92, 96
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 275, 295
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 133, 261
BstUI CGCG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 275, 295
Cac8I GCNNGC 2 cut(s) 92, 96
CviJI RGCY 3 cut(s) 90, 136, 310
CviKI_1 RGCY 3 cut(s) 90, 136, 310
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DraI TTTAAA 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
EciI GGCGGA 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 312
FaqI GGGAC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 198, 256, 259, 262
FokI GGATG 2 cut(s) 262, 282
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 198, 256, 259, 262
FspBI CTAG 1 cut(s) 51
GluI GCNGC 4 cut(s) 198, 256, 259, 262
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 1 cut(s) 115
HphI GGTGA 2 cut(s) 235, 368
Hpy188III TCNNGA 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 147, 154
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 261
HpyF3I CTNAG 1 cut(s) 291
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 52, 108, 109, 196, 233, 342
LweI GCATC 2 cut(s) 136, 304
MaeI CTAG 1 cut(s) 51
MalI GATC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 215
MboII GAAGA 5 cut(s) 273, 326, 329, 344, 347
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 3 cut(s) 73, 285, 351
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 8 cut(s) 93, 172, 176, 185, 197, 203, 257, 289
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 342, 367
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 133, 261
NdeII GATC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 4 cut(s) 199, 257, 260, 263
Psp124BI GAGCTC 1 cut(s) 312
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 342, 367
SatI GCNGC 4 cut(s) 198, 256, 259, 262
Sau3AI GATC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 312
SetI ASST 4 cut(s) 52, 92, 195, 312
SfaNI GCATC 2 cut(s) 136, 304
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 73, 285, 351
SsiI CCGC 9 cut(s) 119, 141, 154, 198, 231, 253, 256, 259, 262
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 312
TaqI TCGA 4 cut(s) 130, 150, 189, 312
TasI AATT 3 cut(s) 73, 285, 351
TauI GCSGC 4 cut(s) 200, 258, 261, 264
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 342, 367
Tru9I TTAA 2 cut(s) 342, 367
TspDTI ATGAA 2 cut(s) 77, 136
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.