Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

124249 .. 125586

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgatcacaaaagcgtccacgatttacatgacctacatcctcaaagaaggcgaagtgccggtggatcttgccaatctccactgccctcgcaaagggtttctggctcctcagtttttcttggttggaaggttaaataatgttagggcagtgatcttgggttccttctggagtgtagtccgatccatgtggcagctctcaatgttagtggatgtgcatgctcgtggagacctttttctcttcacgttcgcaaatgaatctgatctcggaatggtaaaaaaaggaggcccatgggattttcaaagggcgacgattcgtctcactgactatgatgacttttccaaaattgatgctattcctctggattttttatggatctgggtggagatcttgggcttgcctctgggcttgatgacctctgcgatcgctagcttgattgcgcgaaacaattggcccgatcctacaagtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

156

Amino Acids

17.6

Weight (kDa)

6.06

Isoelectric Point (pI)

23.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	439
AclWI	GGATC	4 cut(s)	72, 174, 380, 449
AfiI	CCNNNNNNNGG	2 cut(s)	92, 464
AgsI	TTSAA	1 cut(s)	299
AhdI	GACNNNNNGTC	1 cut(s)	312
AluBI	AGCT	2 cut(s)	193, 429
AluI	AGCT	2 cut(s)	193, 429
Alw26I	GTCTC	2 cut(s)	219, 320
AlwI	GGATC	4 cut(s)	72, 174, 380, 449
AoxI	GGCC	2 cut(s)	283, 449
ApeKI	GCWGC	1 cut(s)	190
AsiSI	GCGATCGC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	284, 450
AsuNHI	GCTAGC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	219, 320
BfaI	CTAG	1 cut(s)	426
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	284, 450
BmiI	GGNNCC	2 cut(s)	105, 160
BmsI	GCATC	1 cut(s)	337
BmtI	GCTAGC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 464
Bse118I	RCCGGY	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	36, 214
BseLI	CCNNNNNNNGG	2 cut(s)	92, 464
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	285, 451
BsiEI	CGRYCG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	92, 464
BsmAI	GTCTC	2 cut(s)	219, 320
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	285, 451
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
Bsp19I	CCATGG	1 cut(s)	287
BspANI	GGCC	2 cut(s)	285, 451
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	105, 160
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	4 cut(s)	72, 174, 380, 449
BspTNI	GGTCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	216, 395, 427
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	36, 214
BstFNI	CGCG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	9 cut(s)	6, 67, 153, 182, 262, 375, 387, 423, 457
BstMAI	GTCTC	2 cut(s)	219, 320
BstMBI	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
BstMCI	CGRYCG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	218
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	3 cut(s)	64, 372, 384
BstYI	RGATCY	3 cut(s)	64, 372, 384
BsuRI	GGCC	2 cut(s)	285, 451
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	36, 214
BtsI	GCAGTG	2 cut(s)	79, 153
BtsIMutI	CAGTG	3 cut(s)	79, 153, 318
Cac8I	GCNNGC	3 cut(s)	216, 395, 427
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	284, 450
CseI	GACGC	1 cut(s)	3
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	4 cut(s)	28, 184, 215, 288
CviJI	RGCY	7 cut(s)	104, 193, 285, 393, 405, 429, 451
CviKI_1	RGCY	7 cut(s)	104, 193, 285, 393, 405, 429, 451
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	9 cut(s)	5, 66, 152, 181, 261, 374, 386, 422, 456
DpnII	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
DriI	GACNNNNNGTC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	242
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	4 cut(s)	31, 187, 218, 291
FaiI	YATR	6 cut(s)	29, 185, 216, 289, 327, 370
FatI	CATG	4 cut(s)	27, 183, 214, 287
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	2 cut(s)	23, 221
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	285, 451
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	4 cut(s)	31, 187, 218, 291
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	2 cut(s)	254, 310
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	179, 259, 266
Hpy188III	TCNNGA	2 cut(s)	166, 359
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	3 cut(s)	41, 120, 172
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	31, 187, 218, 291
HspAI	GCGC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	72, 86, 151, 344, 361, 386
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	242
MalI	GATC	9 cut(s)	5, 66, 152, 181, 261, 374, 386, 422, 456
MboI	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	3 cut(s)	64, 372, 384
MluCI	AATT	2 cut(s)	342, 445
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	50, 96, 117, 275, 366, 408, 424
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	31, 187, 218, 291
NlaIV	GGNNCC	2 cut(s)	105, 160
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	254, 310
PkrI	GCNGC	1 cut(s)	192
Ple19I	CGATCG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	105, 160
PspPI	GGNCC	2 cut(s)	284, 450
PsuI	RGATCY	3 cut(s)	64, 372, 384
PvuI	CGATCG	1 cut(s)	423
RgaI	GCGATCGC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	9 cut(s)	3, 64, 150, 179, 259, 372, 384, 420, 454
Sau96I	GGNCC	2 cut(s)	284, 450
SetI	ASST	7 cut(s)	35, 131, 195, 231, 245, 416, 431
SfaAI	GCGATCGC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	337
SgfI	GCGATCGC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	342, 445
SspMI	CTAG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	245
TasI	AATT	2 cut(s)	342, 445
TfiI	GAWTC	2 cut(s)	254, 310
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	3 cut(s)	86, 153, 325
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	86, 153, 325
XagI	CCTNNNNNAGG	1 cut(s)	90
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.