RLG00000027174

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000172
Physical Location & Seq
Forward (+)
9299225 .. 9299619
395 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027174

Sequence Viewer

Length: 312 bp
ATGATTCGGAGTCAACAAGCTTCTCTTCCGGGGATTGGTGTAAATGCAAGAGGAGCCAATAACCTTGTCGGAATCGCAGTAAACGCCGGCGAAATTACTGGGTCAACCGCCTTCATCAACCGCGACCCCTCCCTCAAGTCCCTCATCTCCCACCTCGACCTCGCTGCCAATCCCAACTCTCGATCCCTGCCGAACTCCGCTTCTCCTGTCACCCTCCACCGCCGCCGTCGCCAACCCAACCCATCCTCTTCAATTTCTCAGCATCCAACCACCAAGCTCGAAGAAGAAGCAGACCCTAGAAGAAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.06

Weight (kDa)

11.58

Isoelectric Point (pI)

72.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 5 cut(s) 108, 121, 198, 220, 223
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 252
AluBI AGCT 2 cut(s) 20, 277
AluI AGCT 2 cut(s) 20, 277
AlwI GGATC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 202
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 297
BisI GCNGC 2 cut(s) 165, 223
BlsI GCNGC 2 cut(s) 166, 224
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 242, 262
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 123
BsiSI CCGG 2 cut(s) 29, 87
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 182
BspACI CCGC 5 cut(s) 108, 121, 198, 220, 223
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 182
Bst6I CTCTTC 2 cut(s) 30, 253
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 242, 262
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 1 cut(s) 185
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 3 cut(s) 53, 83, 228
BstSCI CCNGG 1 cut(s) 28
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 242, 262
Cac8I GCNNGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 86
CviJI RGCY 3 cut(s) 20, 56, 277
CviKI_1 RGCY 3 cut(s) 20, 56, 277
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 30, 253
EarI CTCTTC 2 cut(s) 30, 253
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 165, 223
FokI GGATG 2 cut(s) 229, 249
Fsp4HI GCNGC 2 cut(s) 165, 223
FspBI CTAG 1 cut(s) 297
GluI GCNGC 2 cut(s) 165, 223
HapII CCGG 2 cut(s) 29, 87
HincII GTYRAC 2 cut(s) 14, 105
HindII GTYRAC 2 cut(s) 14, 105
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 4, 10, 72
HpaII CCGG 2 cut(s) 29, 87
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 14, 82, 105
Hpy188I TCNGA 2 cut(s) 9, 71
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 3 cut(s) 14, 82, 105
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 83, 228
HpyF3I CTNAG 1 cut(s) 258
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 42, 84, 100, 200, 219
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 5 cut(s) 17, 240, 293, 296, 312
MluCI AATT 3 cut(s) 93, 252, 306
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 2 cut(s) 49, 290
MnlI CCTC 8 cut(s) 44, 139, 143, 152, 164, 170, 224, 256
MreI CGCCGGCG 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 1 cut(s) 310
MspI CCGG 2 cut(s) 29, 87
MspR9I CCNGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 53, 83, 228
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 30
NdeII GATC 1 cut(s) 182
NgoMIV GCCGGC 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 4, 72
PkrI GCNGC 2 cut(s) 166, 224
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 2 cut(s) 165, 223
Sau3AI GATC 1 cut(s) 182
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 30
SetI ASST 5 cut(s) 22, 66, 156, 162, 279
SfaNI GCATC 1 cut(s) 271
SgrAI CRCCGGYG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 93, 252, 306
SsiI CCGC 5 cut(s) 108, 121, 198, 220, 223
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 28
TaqI TCGA 3 cut(s) 156, 181, 279
TasI AATT 3 cut(s) 93, 252, 306
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 2 cut(s) 4, 72
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 103
XapI RAATTY 1 cut(s) 306
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.