pycom15g37590

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000172
Physical Location & Seq
Forward (+)
37525879 .. 37526283
405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37590.1

Sequence Viewer

Length: 405 bp
ATGGTAGATCATTTATGGAGACATATCTACCAACACTTAAAGGAGGAGAATCCTCAGCTGGAGGTGAGTACTGAACTCGTCCGTGGTCAGCATCCGCATTTGAAGGGCTTATACAGTAAGTCTCTCTCTATCTCATTGCCTCTCTCTAGCAACCGAACACACAGTCACTTCCATTCATGGTCACTGCATAATACCTTAAATTTTCTTGAGGGTTTTCTTTGTCAATGCACAGAGAACAAAAATGAAAAGGTGTTATGCGTGAAGAATATGGATCCAGAAGAGGTTCTTCAGTATGCAAAGAGACTAAGAAACCAACTGGGGAGAAAAGTGGTGAAATTGAAGACTAGACATGTAACCAAACATCCTAGCGTGCAAGGTAAGTGGACAACAGACGTGAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

135

Amino Acids

15.77

Weight (kDa)

9.6

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 2 cut(s) 103, 340
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 3 cut(s) 13, 126, 295
AlwI GGATC 2 cut(s) 266, 279
ApoI RAATTY 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
Asp700I GAANNNNTTC 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 76, 343
BamHI GGATCC 1 cut(s) 271
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BbsI GAAGAC 1 cut(s) 347
BbvCI CCTCAGC 1 cut(s) 54
BcoDI GTCTC 3 cut(s) 13, 126, 295
BfaI CTAG 3 cut(s) 147, 345, 366
BmcAI AGTACT 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 91, 361
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 59
BsmAI GTCTC 3 cut(s) 13, 126, 295
Bsp143I GATC 2 cut(s) 7, 271
BspACI CCGC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 266, 279
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 7, 271
Bst4CI ACNGT 2 cut(s) 116, 164
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 54, 305
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 91, 361
BstKTI GATC 2 cut(s) 10, 274
BstMAI GTCTC 3 cut(s) 13, 126, 295
BstMBI GATC 2 cut(s) 7, 271
BstNSI RCATGY 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 91, 361
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 69
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 2 cut(s) 177, 350
CviJI RGCY 2 cut(s) 58, 108
CviKI_1 RGCY 2 cut(s) 58, 108
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 54, 305
DpnI GATC 2 cut(s) 9, 273
DpnII GATC 2 cut(s) 7, 271
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 272
FaeI CATG 2 cut(s) 180, 353
FaiI YATR 9 cut(s) 16, 24, 112, 178, 189, 256, 269, 294, 351
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 2 cut(s) 176, 349
FokI GGATG 2 cut(s) 78, 348
FspBI CTAG 3 cut(s) 147, 345, 366
GsuI CTGGAG 1 cut(s) 80
Hin1II CATG 2 cut(s) 180, 353
HinfI GANTC 1 cut(s) 49
HphI GGTGA 2 cut(s) 76, 343
Hpy166II GTNNAC 1 cut(s) 384
Hpy188III TCNNGA 2 cut(s) 206, 275
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 116, 164
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 187, 228, 296, 373
HpyF3I CTNAG 2 cut(s) 54, 305
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 180, 353
Kzo9I GATC 2 cut(s) 7, 271
LpnPI CCDG 3 cut(s) 44, 288, 302
LweI GCATC 1 cut(s) 100
MaeI CTAG 3 cut(s) 147, 345, 366
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 164, 180, 352
MalI GATC 2 cut(s) 9, 273
MboI GATC 2 cut(s) 7, 271
MboII GAAGA 4 cut(s) 274, 278, 290, 352
MflI RGATCY 1 cut(s) 271
MluCI AATT 2 cut(s) 199, 335
MnlI CCTC 6 cut(s) 37, 55, 63, 150, 202, 274
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 38, 197
MspA1I CMGCKG 1 cut(s) 58
NdeII GATC 2 cut(s) 7, 271
NlaIII CATG 2 cut(s) 180, 353
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 164, 180
NspI RCATGY 1 cut(s) 353
PciI ACATGT 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 49
PscI ACATGT 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 38, 197
Sau3AI GATC 2 cut(s) 7, 271
ScaI AGTACT 1 cut(s) 70
SetI ASST 7 cut(s) 60, 66, 197, 252, 285, 379, 396
SfaNI GCATC 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 199, 335
SsiI CCGC 1 cut(s) 95
SspMI CTAG 3 cut(s) 147, 345, 366
TaaI ACNGT 2 cut(s) 116, 164
TaiI ACGT 1 cut(s) 396
TasI AATT 2 cut(s) 199, 335
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 38, 197
Tru9I TTAA 2 cut(s) 38, 197
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 2 cut(s) 164, 180
Tsp45I GTSAC 2 cut(s) 164, 180
TspDTI ATGAA 2 cut(s) 165, 258
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 189
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 147, 345, 366
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.