Rmu_co8398699.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398699.1
OG0000172
Physical Location & Seq
Reverse (-)
160 .. 1138
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398699.1_g000001.1.cds

Sequence Viewer

Length: 840 bp
atggtaggacggttgaattcttatcgattggtgaatatcgattcgttccggagtccgatccgctctatgtggtgtttgaatgggactgtgggaatgcagcaaccacaatatcgattcctattctccttttccaatgccagagacatttctagggttaagagaggtggcccatggtgttttcagcgttcaatggtgctgctcaatgactacgacggtgcatctgatattacggttatccctctggacgatactctccagttgatcggagaaacaaatgggtcggtgttggaggtggatgaacgcgggctgcgtgatggtgaggcgcagctacgtctgatggggaggtgcagatcttgttggatgattaaccatggaggggcggcttgtcccaaggtggcggacgttgaggcgatgtcggagggtgagatagtggctacgacgacatctcctataccattgtttcgggctatcacacctcttgccctagcctcttcgactcctcttattcagatggatctcggagagcttgttagggtttatagggtgagaaggcaaagggttggcgacattgttggggctgggaaacttccaaagcatggttttgagcttgtgcccatagagatgcagtttgactttgggctgtcatctgaaggtttgttcgaggtctttgttacctcagtagagaataaggtgaaaaagaaaggcagaccccatggtcggagaaacaaacccaaacctgtcgatgttccaaagagcttggaatttatggcaaatagccatgtgggttctgctgtggacaccaatgcagttgttggtgtgatgcaggaacccctttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

279

Amino Acids

30.85

Weight (kDa)

8.84

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 714
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 4 cut(s) 61, 303, 380, 398
AclWI GGATC 2 cut(s) 52, 522
AcsI RAATTY 2 cut(s) 16, 761
AcuI CTGAAG 1 cut(s) 669
AfiI CCNNNNNNNGG 3 cut(s) 376, 596, 717
AgsI TTSAA 3 cut(s) 16, 79, 189
AluBI AGCT 4 cut(s) 328, 526, 607, 756
AluI AGCT 4 cut(s) 328, 526, 607, 756
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 2 cut(s) 52, 522
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 4 cut(s) 97, 196, 307, 325
ApoI RAATTY 2 cut(s) 16, 761
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 5 cut(s) 43, 329, 434, 556, 703
BaeGI GKGCMC 1 cut(s) 615
BbvI GCAGC 4 cut(s) 109, 183, 294, 337
BccI CCATC 3 cut(s) 308, 331, 505
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 3 cut(s) 150, 485, 838
BglII AGATCT 1 cut(s) 350
BisI GCNGC 5 cut(s) 98, 197, 308, 326, 381
BlsI GCNGC 5 cut(s) 99, 198, 309, 327, 382
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 828
BmsI GCATC 3 cut(s) 227, 612, 810
BpmI CTGGAG 1 cut(s) 239
Bsa29I ATCGAT 3 cut(s) 25, 39, 112
BsaJI CCNNGG 4 cut(s) 170, 370, 390, 712
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 430, 460, 513, 543
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 596, 717
Bse1I ACTGG 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 48
BseCI ATCGAT 3 cut(s) 25, 39, 112
BseDI CCNNGG 4 cut(s) 170, 370, 390, 712
BseGI GGATG 2 cut(s) 301, 366
BseLI CCNNNNNNNGG 3 cut(s) 376, 596, 717
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 4 cut(s) 109, 183, 294, 337
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 168
BshVI ATCGAT 3 cut(s) 25, 39, 112
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 97, 372
BslI CCNNNNNNNGG 3 cut(s) 376, 596, 717
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 97, 372
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 615
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 4 cut(s) 57, 261, 350, 514
Bsp19I CCATGG 3 cut(s) 170, 370, 712
BspACI CCGC 4 cut(s) 61, 303, 380, 398
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 689
BspDI ATCGAT 3 cut(s) 25, 39, 112
BspEI TCCGGA 1 cut(s) 48
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 828
BspPI GGATC 2 cut(s) 52, 522
BsrBI CCGCTC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 4 cut(s) 170, 370, 390, 712
BssMI GATC 4 cut(s) 57, 261, 350, 514
BssT1I CCWWGG 4 cut(s) 170, 370, 390, 712
Bst4CI ACNGT 4 cut(s) 12, 88, 215, 232
Bst6I CTCTTC 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 676
BstDSI CCRYGG 3 cut(s) 170, 370, 712
BstF5I GGATG 2 cut(s) 301, 366
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 4 cut(s) 60, 264, 353, 517
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 57, 261, 350, 514
BstSLI GKGCMC 1 cut(s) 615
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 4 cut(s) 109, 183, 294, 337
BstX2I RGATCY 2 cut(s) 350, 514
BstYI RGATCY 2 cut(s) 350, 514
Bsu15I ATCGAT 3 cut(s) 25, 39, 112
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 3 cut(s) 25, 39, 112
BtgI CCRYGG 3 cut(s) 170, 370, 712
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 301, 366
Cac8I GCNNGC 1 cut(s) 305
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 3 cut(s) 25, 39, 112
CviAII CATG 5 cut(s) 171, 371, 596, 713, 779
DdeI CTNAG 1 cut(s) 676
DpnI GATC 4 cut(s) 59, 263, 352, 516
DpnII GATC 4 cut(s) 57, 261, 350, 514
DrdI GACNNNNNNGTC 1 cut(s) 714
DseDI GACNNNNNNGTC 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 4 cut(s) 170, 370, 390, 712
Eco57I CTGAAG 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 16
EcoT14I CCWWGG 4 cut(s) 170, 370, 390, 712
ErhI CCWWGG 4 cut(s) 170, 370, 390, 712
FaeI CATG 5 cut(s) 174, 374, 599, 716, 782
FaqI GGGAC 2 cut(s) 97, 372
FatI CATG 5 cut(s) 170, 370, 595, 712, 778
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 5 cut(s) 98, 197, 308, 326, 381
FokI GGATG 2 cut(s) 308, 373
Fsp4HI GCNGC 5 cut(s) 98, 197, 308, 326, 381
FspBI CTAG 3 cut(s) 150, 485, 838
GlaI GCGC 1 cut(s) 324
GluI GCNGC 5 cut(s) 98, 197, 308, 326, 381
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 49
HhaI GCGC 1 cut(s) 325
Hin1II CATG 5 cut(s) 174, 374, 599, 716, 782
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 4 cut(s) 41, 52, 114, 496
HpaII CCGG 1 cut(s) 49
HphI GGTGA 5 cut(s) 43, 329, 434, 556, 703
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 9 cut(s) 57, 223, 266, 336, 418, 510, 521, 649, 720
Hpy188III TCNNGA 2 cut(s) 49, 242
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 2 cut(s) 215, 442
HpyAV CCTTC 2 cut(s) 543, 644
HpyCH4III ACNGT 4 cut(s) 12, 88, 215, 232
HpyCH4IV ACGT 2 cut(s) 331, 402
HpyCH4V TGCA 6 cut(s) 97, 218, 348, 625, 806, 823
HpyF3I CTNAG 1 cut(s) 676
HpySE526I ACGT 2 cut(s) 331, 402
Hsp92II CATG 5 cut(s) 174, 374, 599, 716, 782
HspAI GCGC 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 57, 261, 350, 514
LpnPI CCDG 7 cut(s) 62, 151, 227, 269, 564, 750, 809
Lsp1109I GCAGC 4 cut(s) 109, 183, 294, 337
LweI GCATC 3 cut(s) 227, 612, 810
MaeI CTAG 3 cut(s) 150, 485, 838
MaeII ACGT 2 cut(s) 331, 402
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 59, 263, 352, 516
MbiI CCGCTC 1 cut(s) 63
MboI GATC 4 cut(s) 57, 261, 350, 514
MboII GAAGA 1 cut(s) 483
MflI RGATCY 2 cut(s) 350, 514
MhlI GDGCHC 1 cut(s) 615
MluCI AATT 2 cut(s) 16, 761
MlyI GAGTC 2 cut(s) 61, 490
MmeI TCCRAC 4 cut(s) 267, 338, 396, 698
MroI TCCGGA 1 cut(s) 48
MseI TTAA 2 cut(s) 156, 366
MslI CAYNNNNRTG 1 cut(s) 620
MspI CCGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 99
MvnI CGCG 1 cut(s) 303
NcoI CCATGG 3 cut(s) 170, 370, 712
NdeII GATC 4 cut(s) 57, 261, 350, 514
NlaIII CATG 5 cut(s) 174, 374, 599, 716, 782
NlaIV GGNNCC 1 cut(s) 828
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 41, 114
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 5 cut(s) 99, 198, 309, 327, 382
PleI GAGTC 2 cut(s) 60, 490
PpsI GAGTC 2 cut(s) 60, 490
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 2 cut(s) 350, 514
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 156, 366
SatI GCNGC 5 cut(s) 98, 197, 308, 326, 381
Sau3AI GATC 4 cut(s) 57, 261, 350, 514
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 61, 490
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 3 cut(s) 227, 612, 810
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 2 cut(s) 16, 761
SsiI CCGC 4 cut(s) 61, 303, 380, 398
SspMI CTAG 3 cut(s) 150, 485, 838
StyI CCWWGG 4 cut(s) 170, 370, 390, 712
TaaI ACNGT 4 cut(s) 12, 88, 215, 232
TaiI ACGT 2 cut(s) 334, 405
TaqI TCGA 6 cut(s) 25, 39, 112, 494, 660, 741
TasI AATT 2 cut(s) 16, 761
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 41, 114
Tru1I TTAA 2 cut(s) 156, 366
Tru9I TTAA 2 cut(s) 156, 366
TseI GCWGC 4 cut(s) 97, 196, 307, 325
TspDTI ATGAA 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 596
XapI RAATTY 2 cut(s) 16, 761
XspI CTAG 3 cut(s) 150, 485, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.