Rmu_sc0020656.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020656.1
OG0000172
Physical Location & Seq
Forward (+)
17 .. 331
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020656.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgattttgttgaatgactatgatggcttttcagagattgctgaggtgaaactcgactttgtttgtatctgggttgtgcttcagggcatcccaccgggtatcttgactgaacccaaggtcagtttggtgggagggacgattggagaggtcttggaagtggatcgattggctcttcgtcgtggagaagctcgggttaggcttgttttctccatcaacaatccggtgcgtctggatagaagggttagggtttctcccactgatgttctgacattgcgattctggtatgagcgattgttgggacgttgcagactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

8.8

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 17, 218
BcnI CCSGG 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 95, 221
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 163
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 163
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 163
CseI GACGC 1 cut(s) 215
CviJI RGCY 4 cut(s) 27, 170, 188, 199
CviKI_1 RGCY 4 cut(s) 27, 170, 188, 199
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 2 cut(s) 21, 285
FaqI GGGAC 1 cut(s) 148
FokI GGATG 1 cut(s) 74
HapII CCGG 2 cut(s) 95, 221
HgaI GACGC 1 cut(s) 215
HinfI GANTC 1 cut(s) 276
HpaII CCGG 2 cut(s) 95, 221
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 34, 267
Hpy188III TCNNGA 2 cut(s) 103, 230
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 301
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 55, 68, 108, 215, 234, 265
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 301
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 164
MnlI CCTC 3 cut(s) 37, 125, 139
MspI CCGG 2 cut(s) 95, 221
MspR9I CCNGG 1 cut(s) 96
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 96
SetI ASST 5 cut(s) 48, 120, 150, 190, 304
SfaNI GCATC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 54, 163
TfiI GAWTC 1 cut(s) 276
TscAI CASTG 1 cut(s) 262
TspRI CASTG 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.