FvH4_6g31094

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000172
Physical Location & Seq
Reverse (-)
24300386 .. 24301736
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31094.t1

Sequence Viewer

Length: 672 bp
ATGGCAGCCACTACGGCAGCCTCTACTGCATCAATGAATGCTCGACTCAATGTGGAAGATCTCATCGTCGGTGGAGGAGTGCACTACACTCAATGTGGAAGATCTCGTCTCCGGTGGAGGTTCAAGCCAAAGAGAGCGATGATCCTCCTCAATGACTATGATGGCTTTTTAGACATCATGGAGGTAGATAATTGTGGCATCAATCATGGTGTGGTGAGGGTGAGGCTCACCCTTCCTCTGCATGAGCCGGGCGGTGTCGCACATGCGCCACGATCAACCATGGTGGCATCTTATGTATGTCCTTGTGAAAGCGAACCACCGCAATCTGAGCCACCGGTGGTTGTTGCAGCAGTGGTGCCTACCATACCTGCTATGGTGTTTCGAGGAAACATCCAAGCATCTCTCTTTGTCCCTATGCCTCATCTTTTTCTGGTTGCAAAAGAAAAGACAACAATTTCAATCAGGGATGTTCCGGCGTTCCCCTCCCCAATAAACATCACTGGTTTACGTAGAGGCACACGGGGAACTATGCACACCGGGTCTCCTAAGAAACTTGGGCGTCCTTGCGATAGCAGGAACAAGAAGAAAAATCATGGAGATGCCTCAGATTCCATGGCATCCAATTCGGTGGTGGAAGAGCTGGATACTGCCTCTAAAGCCGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

224

Amino Acids

24.1

Weight (kDa)

9.06

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 355
AciI CCGC 2 cut(s) 252, 320
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 559
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 2 cut(s) 124, 459
AluBI AGCT 1 cut(s) 640
AluI AGCT 1 cut(s) 640
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 113, 546
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 5, 17, 347
ApoI RAATTY 1 cut(s) 666
AsiGI ACCGGT 1 cut(s) 334
AspLEI GCGC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 249, 538
AsuHPI GGTGA 3 cut(s) 220, 226, 232
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 17, 29, 359
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 2 cut(s) 249, 538
BcoDI GTCTC 2 cut(s) 113, 546
BfuAI ACCTGC 1 cut(s) 376
BfuI GTATCC 1 cut(s) 637
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 2 cut(s) 58, 101
BisI GCNGC 3 cut(s) 6, 18, 348
BlsI GCNGC 3 cut(s) 7, 19, 349
Bme1390I CCNGG 2 cut(s) 249, 538
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 249, 538
BmsI GCATC 6 cut(s) 38, 207, 296, 407, 589, 626
BpuMI CCSGG 2 cut(s) 249, 538
BsaAI YACGTR 1 cut(s) 509
BsaHI GRCGYC 1 cut(s) 559
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 279, 612
BsaWI WCCGGW 2 cut(s) 111, 334
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 279, 612
BseGI GGATG 3 cut(s) 390, 472, 617
BseMII CTCAG 2 cut(s) 318, 618
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 2 cut(s) 90, 137
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 17, 29, 359
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 5 cut(s) 112, 248, 335, 473, 537
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 113, 546
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 58, 101, 141, 272
Bsp19I CCATGG 2 cut(s) 279, 612
BspACI CCGC 2 cut(s) 252, 320
BspCNI CTCAG 2 cut(s) 319, 617
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 279, 612
BssMI GATC 4 cut(s) 58, 101, 141, 272
BssNI GRCGYC 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 279, 612
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 509
BstDEI CTNAG 3 cut(s) 327, 546, 604
BstDSI CCRYGG 2 cut(s) 279, 612
BstF5I GGATG 3 cut(s) 390, 472, 617
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 4 cut(s) 61, 104, 144, 275
BstMAI GTCTC 2 cut(s) 113, 546
BstMBI GATC 4 cut(s) 58, 101, 141, 272
BstMWI GCNNNNNNNGC 4 cut(s) 14, 26, 328, 656
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 247, 536
BstSLI GKGCMC 1 cut(s) 84
BstSNI TACGTA 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 17, 29, 359
BstX2I RGATCY 2 cut(s) 58, 101
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 2 cut(s) 58, 101
BsuI GTATCC 1 cut(s) 637
BtgI CCRYGG 2 cut(s) 279, 612
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 3 cut(s) 390, 472, 617
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 357, 498
BveI ACCTGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 334
CseI GACGC 1 cut(s) 548
CspAI ACCGGT 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 7 cut(s) 178, 206, 242, 263, 280, 593, 613
CviJI RGCY 9 cut(s) 8, 20, 127, 165, 226, 247, 331, 640, 659
CviKI_1 RGCY 9 cut(s) 8, 20, 127, 165, 226, 247, 331, 640, 659
DdeI CTNAG 3 cut(s) 327, 546, 604
DpnI GATC 4 cut(s) 60, 103, 143, 274
DpnII GATC 4 cut(s) 58, 101, 141, 272
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco105I TACGTA 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 279, 612
Eco31I GGTCTC 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 279, 612
ErhI CCWWGG 2 cut(s) 279, 612
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 7 cut(s) 181, 209, 245, 266, 283, 596, 616
FaqI GGGAC 1 cut(s) 395
FatI CATG 7 cut(s) 177, 205, 241, 262, 279, 592, 612
Fnu4HI GCNGC 3 cut(s) 6, 18, 348
FokI GGATG 3 cut(s) 377, 479, 604
Fsp4HI GCNGC 3 cut(s) 6, 18, 348
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 6, 18, 348
HapII CCGG 5 cut(s) 112, 248, 335, 473, 537
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 7 cut(s) 181, 209, 245, 266, 283, 596, 616
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 45, 608
HpaII CCGG 5 cut(s) 112, 248, 335, 473, 537
HphI GGTGA 3 cut(s) 220, 226, 232
Hpy166II GTNNAC 2 cut(s) 82, 506
Hpy188I TCNGA 2 cut(s) 328, 607
Hpy8I GTNNAC 2 cut(s) 82, 506
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 6 cut(s) 29, 82, 241, 347, 437, 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 26, 328, 656
HpyF3I CTNAG 3 cut(s) 327, 546, 604
HpySE526I ACGT 1 cut(s) 508
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 7 cut(s) 181, 209, 245, 266, 283, 596, 616
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 4 cut(s) 58, 101, 141, 272
LguI GCTCTTC 1 cut(s) 630
Lsp1109I GCAGC 3 cut(s) 17, 29, 359
LweI GCATC 6 cut(s) 38, 207, 296, 407, 589, 626
MaeII ACGT 1 cut(s) 508
MalI GATC 4 cut(s) 60, 103, 143, 274
MboI GATC 4 cut(s) 58, 101, 141, 272
MboII GAAGA 4 cut(s) 68, 111, 595, 647
MflI RGATCY 2 cut(s) 58, 101
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 190, 453, 622, 666
MlyI GAGTC 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 5 cut(s) 112, 248, 335, 473, 537
MspR9I CCNGG 2 cut(s) 249, 538
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 14, 26, 328, 656
NciI CCSGG 2 cut(s) 249, 538
NcoI CCATGG 2 cut(s) 279, 612
NdeII GATC 4 cut(s) 58, 101, 141, 272
NlaIII CATG 7 cut(s) 181, 209, 245, 266, 283, 596, 616
NlaIV GGNNCC 1 cut(s) 357
NspI RCATGY 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 630
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 608
PinAI ACCGGT 1 cut(s) 334
PkrI GCNGC 3 cut(s) 7, 19, 349
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 509
PspN4I GGNNCC 1 cut(s) 357
PsuI RGATCY 2 cut(s) 58, 101
RseI CAYNNNNRTG 1 cut(s) 597
SapI GCTCTTC 1 cut(s) 630
SatI GCNGC 3 cut(s) 6, 18, 348
Sau3AI GATC 4 cut(s) 58, 101, 141, 272
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 249, 538
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 122, 186, 370, 511, 642
SfaNI GCATC 6 cut(s) 38, 207, 296, 407, 589, 626
SgrAI CRCCGGYG 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 597
SnaBI TACGTA 1 cut(s) 509
Sse9I AATT 4 cut(s) 190, 453, 622, 666
SsiI CCGC 2 cut(s) 252, 320
StyD4I CCNGG 2 cut(s) 247, 536
StyI CCWWGG 2 cut(s) 279, 612
TaiI ACGT 1 cut(s) 511
TaqI TCGA 2 cut(s) 43, 382
TasI AATT 4 cut(s) 190, 453, 622, 666
TfiI GAWTC 1 cut(s) 608
TscAI CASTG 2 cut(s) 357, 505
TseI GCWGC 3 cut(s) 5, 17, 347
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 2 cut(s) 357, 505
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 2 cut(s) 370, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.