FvH4_6g36541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000172
Physical Location & Seq
Forward (+)
28772209 .. 28773708
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36541.t1

Sequence Viewer

Length: 450 bp
ATGGCGGCCAGGGTTAGAGTTTTGGAGAAAACTTTTGAGTTGTGCGGCGTGATCCATCTGTCATGCATGGCTACCTCTGTTGCTGCAATGACAGCCAACCTAGCCACCAAGCTTTCTCTTGTTATATTTGAGTCTCTTGAGGTGGCTCAACACGTATTGCCAGAGCAGTCACGTCACATCCTTTTAGGAGTGTTGTTTGCTCAATGCATGTGGAGATTATCCTCTCTCGTGGAAGTTCAAGCAAGAGATCCAAGATCTTCTGGCGGCGTTGATATTCCTACCATTGCCCCTCTTATGGGTGAGATCGTGGGTCTGGTTCTCCAAGTCGACAATATTGCCTTTCATCGCAACGTTGATACGGACGTGCTGCCTTTCCCTTATCCCTCTAAGGTTGTTGGAATGCGCTGCAGCCGTGAAGAAGTTGAGCAGGAGGTGGGGAAGAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.35

Weight (kDa)

6.07

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AciI CCGC 3 cut(s) 5, 45, 264
AclI AACGTT 1 cut(s) 351
AclWI GGATC 2 cut(s) 46, 242
AcoI YGGCCR 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 295, 296
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 239
AjiI CACGTC 2 cut(s) 173, 364
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 46, 242
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 4 cut(s) 83, 367, 405, 408
AspLEI GCGC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BauI CACGAG 1 cut(s) 227
BbvI GCAGC 4 cut(s) 70, 354, 392, 420
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 101, 448
BfmI CTRYAG 1 cut(s) 406
BglII AGATCT 1 cut(s) 254
BisI GCNGC 7 cut(s) 6, 46, 84, 265, 368, 406, 409
BlsI GCNGC 7 cut(s) 7, 47, 85, 266, 369, 407, 410
Bme1390I CCNGG 1 cut(s) 10
BmgBI CACGTC 2 cut(s) 173, 364
BmrFI CCNGG 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 296
Bse3DI GCAATG 2 cut(s) 93, 282
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 295, 296
BseMI GCAATG 2 cut(s) 93, 282
BseXI GCAGC 4 cut(s) 70, 354, 392, 420
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 295, 296
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 51, 247, 254, 303
BspACI CCGC 3 cut(s) 5, 45, 264
BspANI GGCC 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 410
BspPI GGATC 2 cut(s) 46, 242
BsrDI GCAATG 2 cut(s) 93, 282
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 4 cut(s) 51, 247, 254, 303
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 4 cut(s) 54, 250, 257, 306
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 51, 247, 254, 303
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 70, 354, 392, 420
BstX2I RGATCY 2 cut(s) 247, 254
BstYI RGATCY 2 cut(s) 247, 254
BsuRI GGCC 1 cut(s) 8
BtgZI GCGATG 1 cut(s) 329
BtrI CACGTC 2 cut(s) 173, 364
BtsCI GGATG 1 cut(s) 177
CfoI GCGC 1 cut(s) 405
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 3 cut(s) 63, 67, 208
CviJI RGCY 8 cut(s) 8, 71, 95, 104, 112, 146, 411, 445
CviKI_1 RGCY 8 cut(s) 8, 71, 95, 104, 112, 146, 411, 445
DdeI CTNAG 1 cut(s) 387
DpnI GATC 4 cut(s) 53, 249, 256, 305
DpnII GATC 4 cut(s) 51, 247, 254, 303
EaeI YGGCCR 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 8
EcoT22I ATGCAT 2 cut(s) 68, 209
FaeI CATG 3 cut(s) 66, 70, 211
FaiI YATR 5 cut(s) 64, 68, 125, 209, 296
FatI CATG 3 cut(s) 62, 66, 207
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 7 cut(s) 6, 46, 84, 265, 368, 406, 409
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 7 cut(s) 6, 46, 84, 265, 368, 406, 409
FspBI CTAG 2 cut(s) 101, 448
GlaI GCGC 1 cut(s) 404
GluI GCNGC 7 cut(s) 6, 46, 84, 265, 368, 406, 409
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 405
Hin1II CATG 3 cut(s) 66, 70, 211
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4IV ACGT 4 cut(s) 153, 172, 351, 363
HpyCH4V TGCA 4 cut(s) 66, 86, 207, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 4 cut(s) 153, 172, 351, 363
Hsp92II CATG 3 cut(s) 66, 70, 211
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 4 cut(s) 51, 247, 254, 303
LpnPI CCDG 5 cut(s) 22, 174, 246, 299, 413
Lsp1109I GCAGC 4 cut(s) 70, 354, 392, 420
MaeI CTAG 2 cut(s) 101, 448
MaeII ACGT 4 cut(s) 153, 172, 351, 363
MaeIII GTNAC 2 cut(s) 168, 173
MalI GATC 4 cut(s) 53, 249, 256, 305
MboI GATC 4 cut(s) 51, 247, 254, 303
MboII GAAGA 2 cut(s) 249, 428
MflI RGATCY 2 cut(s) 247, 254
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 6 cut(s) 85, 133, 232, 300, 394, 424
Mph1103I ATGCAT 2 cut(s) 68, 209
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 4 cut(s) 51, 247, 254, 303
NlaIII CATG 3 cut(s) 66, 70, 211
NmuCI GTSAC 2 cut(s) 168, 173
NsiI ATGCAT 2 cut(s) 68, 209
NspI RCATGY 1 cut(s) 211
PctI GAATGC 1 cut(s) 405
PkrI GCNGC 7 cut(s) 7, 47, 85, 266, 369, 407, 410
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PstI CTGCAG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 247, 254
SalI GTCGAC 1 cut(s) 326
SatI GCNGC 7 cut(s) 6, 46, 84, 265, 368, 406, 409
Sau3AI GATC 4 cut(s) 51, 247, 254, 303
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 3 cut(s) 5, 45, 264
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 101, 448
StyD4I CCNGG 1 cut(s) 8
TaiI ACGT 4 cut(s) 156, 175, 354, 366
TaqI TCGA 1 cut(s) 327
TauI GCSGC 3 cut(s) 8, 48, 267
TseFI GTSAC 2 cut(s) 168, 173
TseI GCWGC 4 cut(s) 83, 367, 405, 408
Tsp45I GTSAC 2 cut(s) 168, 173
TspDTI ATGAA 1 cut(s) 332
TspGWI ACGGA 1 cut(s) 374
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 2 cut(s) 101, 448
Zsp2I ATGCAT 2 cut(s) 68, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.