Rh1DG140100

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000172
Physical Location & Seq
Forward (+)
29651715 .. 29654838
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG140100.1

Sequence Viewer

Length: 273 bp
ATGGAGTCTTACCTACCTGCATTTAAGGAGAAGAATCCTCAGCTAGAGGTAGTTACTGAACACATTCGTGGTCAGCATCCTCATTTGAAGGGCTTATACAACAACCAAAATGAAAGAGTGGTATGTGTGAAGAATATGGATCCAGAAGAGATTCTTCAATGTGCAACTAGGCTAAGGAATTCACTCGGGAGAAAAGTGGTGAAGCTGCGGACTAGACATGTAACCAAACATCCAAGCGTGCAAGGTACCTGGACGGCAGACATCAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

90

Amino Acids

10.49

Weight (kDa)

9.69

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 1 - 48 7.6e-12 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 1 cut(s) 208
AclWI GGATC 2 cut(s) 134, 147
AcsI RAATTY 2 cut(s) 178, 266
AfaI GTAC 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 88, 158
AjnI CCWGG 1 cut(s) 248
AleI CACNNNNGTG 1 cut(s) 66
AluBI AGCT 2 cut(s) 43, 205
AluI AGCT 2 cut(s) 43, 205
AlwI GGATC 2 cut(s) 134, 147
Ama87I CYCGRG 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 2 cut(s) 178, 266
Asp700I GAANNNNTTC 2 cut(s) 63, 150
Asp718I GGTACC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 185
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 250
BfaI CTAG 3 cut(s) 44, 168, 213
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 141, 247
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 85
Bpu10I CCTNAGC 2 cut(s) 39, 173
BseBI CCWGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 76, 229
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 141, 247
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 2 cut(s) 134, 147
BspT107I GGYRCC 1 cut(s) 245
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 39, 173
BstF5I GGATG 2 cut(s) 76, 229
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtsCI GGATG 2 cut(s) 76, 229
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 43, 93, 172, 205
CviKI_1 RGCY 4 cut(s) 43, 93, 172, 205
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 39, 173
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 97, 124, 137, 219
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 2 cut(s) 63, 216
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 3 cut(s) 44, 168, 213
GluI GCNGC 1 cut(s) 206
Hin1II CATG 1 cut(s) 221
HinfI GANTC 3 cut(s) 5, 34, 151
HphI GGTGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 143, 187
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 20, 164, 241
HpyF3I CTNAG 2 cut(s) 39, 173
Hsp92II CATG 1 cut(s) 221
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 30, 156, 235, 262
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 85
MaeI CTAG 3 cut(s) 44, 168, 213
MaeIII GTNAC 2 cut(s) 52, 220
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 43, 142, 146, 158
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 178, 266
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 40, 48, 90
MroXI GAANNNNTTC 2 cut(s) 63, 150
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 141, 247
NspI RCATGY 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 66
PciI ACATGT 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 63, 150
PfeI GAWTC 2 cut(s) 34, 151
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 141, 247
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 250
SetI ASST 7 cut(s) 15, 19, 45, 51, 207, 247, 251
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 2 cut(s) 178, 266
SsiI CCGC 1 cut(s) 208
SspMI CTAG 3 cut(s) 44, 168, 213
StyD4I CCNGG 1 cut(s) 248
TasI AATT 2 cut(s) 178, 266
TfiI GAWTC 2 cut(s) 34, 151
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 126
XapI RAATTY 2 cut(s) 178, 266
XceI RCATGY 1 cut(s) 221
XmnI GAANNNNTTC 2 cut(s) 63, 150
XspI CTAG 3 cut(s) 44, 168, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.