Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

15680157 .. 15684501

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGGAGCAATGGTCTCGAAAAGCTTATCCACAAGCGACGTGTTGGAGTGGATGACTGTGTGTTTGATATTTCAATCTCTTCTGGGAAGGCGGCAACATCAGCAACGAAGGCAGTCACACCTAAGATTGACCTCTCGTCGGCAATTAAAGAAAAGAGAGCAGTCTCAATTCGAGAAATCCTAGGTTTCTTTTCTCCTCCCAAGATCACTAGTGTGCGTAGAGGCCGAGAGGAGGATGACACTACAGTTGGCAAGCGCCCTAAGCACGCGCTAGCCATGCTGTCGATGCCTCTAAACCCTAATGAGTTATTTTCAGTTATTTCTAATGGCAACTTGGGAATCATACATATTGGGAAATCCCCCAAGAAGCAAGGCCACCCTCGGGAACAAGAAAAAGATCATGAGAGCAACCTCAGATTCCATGGCATCAAGCTCGATGGCAGGGGAGCTAGAAACTGCTTCCGAGATAGAAGAGGGTTGATTCCTAGTACCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

166

Amino Acids

18.18

Weight (kDa)

10.17

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	139, 232, 382
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	75
AhdI	GACNNNNNGTC	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	209
AjiI	CACGTC	1 cut(s)	41
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	25, 433, 449
AluI	AGCT	3 cut(s)	25, 433, 449
Alw26I	GTCTC	2 cut(s)	20, 169
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	2 cut(s)	223, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspA2I	CCTAGG	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	258, 271
AsuNHI	GCTAGC	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	381
AvrII	CCTAGG	1 cut(s)	181
BccI	CCATC	1 cut(s)	431
BcgI	CGANNNNNNTGC	3 cut(s)	32, 415, 449
BcoDI	GTCTC	2 cut(s)	20, 169
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	6 cut(s)	182, 210, 272, 450, 486, 496
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	1 cut(s)	93
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	94
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	41
BmsI	GCATC	2 cut(s)	276, 435
BmtI	GCTAGC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	181, 380, 421
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 232, 382
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	181, 380, 421
BseGI	GGATG	2 cut(s)	58, 241
BseLI	CCNNNNNNNGG	3 cut(s)	139, 232, 382
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	186, 245
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	225, 375
BsiHKCI	CYCGRG	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	139, 232, 382
BsmAI	GTCTC	2 cut(s)	20, 169
BsnI	GGCC	2 cut(s)	225, 375
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	204, 397
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	225, 375
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	181, 380, 421
BssMI	GATC	2 cut(s)	204, 397
BssT1I	CCWWGG	2 cut(s)	181, 421
Bst4CI	ACNGT	2 cut(s)	59, 247
Bst6I	CTCTTC	2 cut(s)	85, 466
BstC8I	GCNNGC	3 cut(s)	254, 267, 273
BstDEI	CTNAG	3 cut(s)	123, 261, 413
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	2 cut(s)	58, 241
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	258, 271
BstKTI	GATC	2 cut(s)	207, 400
BstMAI	GTCTC	2 cut(s)	20, 169
BstMBI	GATC	2 cut(s)	204, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 262, 277, 286
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	225, 375
BtgI	CCRYGG	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	58, 241
Cac8I	GCNNGC	3 cut(s)	254, 267, 273
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	258, 271
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	3 cut(s)	277, 401, 422
CviJI	RGCY	6 cut(s)	25, 225, 275, 375, 433, 449
CviKI_1	RGCY	6 cut(s)	25, 225, 275, 375, 433, 449
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	3 cut(s)	123, 261, 413
DpnI	GATC	2 cut(s)	206, 399
DpnII	GATC	2 cut(s)	204, 397
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	85, 466
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	2 cut(s)	85, 466
Eco130I	CCWWGG	2 cut(s)	181, 421
Eco31I	GGTCTC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	181, 421
ErhI	CCWWGG	2 cut(s)	181, 421
FaeI	CATG	3 cut(s)	280, 404, 425
FaiI	YATR	5 cut(s)	278, 344, 348, 402, 423
FatI	CATG	3 cut(s)	276, 400, 421
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	65, 248
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	182, 210, 272, 450, 486, 496
GlaI	GCGC	2 cut(s)	257, 270
GluI	GCNGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	225, 375
HhaI	GCGC	2 cut(s)	258, 271
Hin1II	CATG	3 cut(s)	280, 404, 425
Hin6I	GCGC	2 cut(s)	256, 269
HinP1I	GCGC	2 cut(s)	256, 269
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	3 cut(s)	339, 417, 481
Hpy188I	TCNGA	2 cut(s)	416, 464
Hpy188III	TCNNGA	4 cut(s)	17, 173, 383, 401
Hpy99I	CGWCG	2 cut(s)	42, 142
HpyAV	CCTTC	2 cut(s)	82, 103
HpyCH4III	ACNGT	2 cut(s)	59, 247
HpyCH4IV	ACGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 262, 277, 286
HpyF3I	CTNAG	3 cut(s)	123, 261, 413
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	280, 404, 425
HspAI	GCGC	2 cut(s)	256, 269
Kzo9I	GATC	2 cut(s)	204, 397
LmnI	GCTCC	2 cut(s)	6, 446
LpnPI	CCDG	2 cut(s)	69, 427
LweI	GCATC	2 cut(s)	276, 435
MaeI	CTAG	6 cut(s)	182, 210, 272, 450, 486, 496
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	206, 399
MboI	GATC	2 cut(s)	204, 397
MboII	GAAGA	2 cut(s)	72, 483
MluCI	AATT	2 cut(s)	144, 168
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	143, 207, 215, 223, 226, 300, 390, 422, 467
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 262, 277, 286
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	204, 397
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	280, 404, 425
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	339, 417, 481
PkrI	GCNGC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	204, 397
SetI	ASST	8 cut(s)	27, 43, 124, 135, 187, 414, 435, 451
SfaNI	GCATC	2 cut(s)	276, 435
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	2 cut(s)	144, 168
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	6 cut(s)	182, 210, 272, 450, 486, 496
StyI	CCWWGG	2 cut(s)	181, 421
TaaI	ACNGT	2 cut(s)	59, 247
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	18, 172, 284, 435
TasI	AATT	2 cut(s)	144, 168
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	339, 417, 481
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	6 cut(s)	182, 210, 272, 450, 486, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.