Rmu_sc0005970.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005970.1
OG0000172
Physical Location & Seq
Reverse (-)
8423 .. 14275
5853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005970.1_g000002.1.cds

Sequence Viewer

Length: 1926 bp
atgactgctaggctagcaacaacactatcgctcagggacggcgaggggctggtggacttgggaaatctttgggttcccgggaaggagtttttggccaggaactactacttgattggaacaatggaggtccaaccaagggtagatcgctttctgtttacgctcacccatgaacgtgatcttgctagggtgaagaagggtgaactactggcttttcagcgagccatggttcttctcaatgattacgatggattctcggatatctttgtaattagactggacttcgtgtggatctgggtagagttgcaggggatgcctccgaggattttaacagaaactactgttagattagttggagagacaattagggagatcttgcaagtggattggactgctttgcgtcggggaatatcgagagttcatctcatattgtccatcaatgagttagtatgcctagatcatagggttagggtttcccatttagacgttctaaccctccaatttaggtatgagcgccttttgggtagttgcagacagtgtgccatgctcaaccatggtggagaaagatgccctagggaggtggagacgaaagcggagcagatcgaggctcctggtctgtctcagatagtggggtcggccattccagcctttgttttgaaggcaaatacgcctgtgtcagaaggaacctcggcaactcctccagttgttgaagcgcggcatcagagtgaggaggagcctcaggcagatggcaagaaggcaaaggatagccttgccttagttctggccccattatcggaggaacaatgccaaggcctcattggtgacctctatatgtgctgggtccgaattgatggtgacggcctatctgaaggagggtctggaggacagcatgtgaagatctcagggctggactctctttccaactttgggtttctcggtggatctcctccatcgacaaaaattccaaaaccttttcttcaccgcccaattctcttcatcaattcaatgctagaggcgaacctcgctgttgatttgtcacactcggattcattgttggtttcgctgggggcagcaggggcagctgcatttcaagacagtcaatggtacatggttggccgtttgttggctccgaaggcaaaactaccagggttcaagggaacgattgctgctatttggcatatcagatcagggctctctattcaggacgtgggggagcactttgtcttccaattcgataacgaggccgtgcgaaatagggttttgaatggaggaccgtggttttatcgtaacaccatgcttgtggttggggagtatgatggcctgagtcctgtggcagatgtgtcactgtataggatggaagcctgggttgtcgtgaggggactgccaatggctttgaggaacaaagtggctctctctactacaagagaaaactcctttagtgacaaaccagttttgtctctcattcaaacaaatttgtcacccattgggcacatcatacacttcggtctgaatgcgctgaagcgtaaggaggaagaacagcgaatcaaagttgtgtttgatgttcgttgccggattcggacatggaagctcgttgagttctctgctagtgtgaaaccggagctggtgtttgtctatgaaaaggagaaggttgagcttcaggctaagtcgcctgaggccgccatggctggcctttctctaaccttggaggtagattactcttctggtggtcctggcaggttgatgaatctgaatatttggccagctcaccgcagcaaggctatgggaacaggagggcaggagttggaattttatggtggcagtagcggtggtctgcttgctgagaagggagaccaagcggtcactgttcatcatggaactgttgggccagtgcctatggtgtttgaacccaaaataagcattttgacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

641

Amino Acids

70.81

Weight (kDa)

6.49

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1853
Acc36I ACCTGC 1 cut(s) 1722
AccII CGCG 1 cut(s) 712
AciI CCGC 7 cut(s) 590, 712, 979, 1674, 1765, 1821, 1853
AclWI GGATC 2 cut(s) 296, 946
AcoI YGGCCR 4 cut(s) 93, 633, 1111, 1754
AcsI RAATTY 3 cut(s) 957, 1468, 1802
AcuI CTGAAG 3 cut(s) 885, 1535, 1637
AfaI GTAC 1 cut(s) 1103
AfiI CCNNNNNNNGG 6 cut(s) 136, 574, 790, 924, 1120, 1771
AgsI TTSAA 8 cut(s) 655, 707, 1002, 1088, 1150, 1261, 1463, 1901
AjiI CACGTC 1 cut(s) 1204
AjnI CCWGG 5 cut(s) 95, 607, 1141, 1358, 1726
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 5 cut(s) 1079, 1585, 1618, 1651, 1760
AluI AGCT 5 cut(s) 1079, 1585, 1618, 1651, 1760
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 5 cut(s) 350, 575, 621, 1458, 1839
AlwI GGATC 2 cut(s) 296, 946
Ama87I CYCGRG 1 cut(s) 77
ApeKI GCWGC 5 cut(s) 1067, 1076, 1079, 1163, 1767
ApoI RAATTY 3 cut(s) 957, 1468, 1802
AspA2I CCTAGG 1 cut(s) 569
AspLEI GCGC 3 cut(s) 513, 712, 1513
AspS9I GGNCC 6 cut(s) 127, 781, 838, 1268, 1724, 1880
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 8 cut(s) 154, 199, 209, 830, 863, 968, 1467, 1754
AsuNHI GCTAGC 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 4 cut(s) 127, 838, 1268, 1724
AvrII CCTAGG 1 cut(s) 569
AxyI CCTNAGG 2 cut(s) 735, 1668
BaeGI GKGCMC 1 cut(s) 1488
BalI TGGCCA 2 cut(s) 95, 1756
BanII GRGCYC 1 cut(s) 1191
BbsI GAAGAC 1 cut(s) 1213
Bbv12I GWGCWC 1 cut(s) 1215
BbvI GCAGC 5 cut(s) 1066, 1079, 1088, 1150, 1779
BccI CCATC 7 cut(s) 239, 440, 737, 842, 955, 1307, 1345
BceAI ACGGC 4 cut(s) 55, 871, 1098, 1226
BciT130I CCWGG 5 cut(s) 97, 609, 1143, 1360, 1728
BcnI CCSGG 2 cut(s) 78, 79
BcoDI GTCTC 5 cut(s) 350, 575, 621, 1458, 1839
BfaI CTAG 7 cut(s) 9, 14, 183, 452, 570, 1007, 1602
BfoI RGCGCY 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 1722
BglI GCCNNNNNGGC 1 cut(s) 1679
BglII AGATCT 2 cut(s) 369, 894
BisI GCNGC 7 cut(s) 713, 1068, 1077, 1080, 1164, 1674, 1768
BlnI CCTAGG 1 cut(s) 569
BlsI GCNGC 7 cut(s) 714, 1069, 1078, 1081, 1165, 1675, 1769
Bme1390I CCNGG 7 cut(s) 78, 79, 97, 609, 1143, 1360, 1728
Bme18I GGWCC 4 cut(s) 127, 838, 1268, 1724
BmeT110I CYCGRG 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 1204
BmgT120I GGNCC 6 cut(s) 127, 781, 838, 1268, 1724, 1880
BmiI GGNNCC 7 cut(s) 75, 606, 682, 732, 783, 839, 1125
BmrFI CCNGG 7 cut(s) 78, 79, 97, 609, 1143, 1360, 1728
BmsI GCATC 3 cut(s) 300, 554, 724
BmtI GCTAGC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 1213
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BpmI CTGGAG 2 cut(s) 681, 897
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 78, 79
BsaI GGTCTC 1 cut(s) 1839
BsaWI WCCGGW 1 cut(s) 1612
BsaXI ACNNNNNCTCC 2 cut(s) 1607, 1637
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 574, 790, 924, 1120, 1771
Bse1I ACTGG 5 cut(s) 210, 279, 698, 1445, 1883
Bse21I CCTNAGG 2 cut(s) 735, 1668
BseBI CCWGG 5 cut(s) 97, 609, 1143, 1360, 1728
BseGI GGATG 2 cut(s) 315, 1356
BseLI CCNNNNNNNGG 6 cut(s) 136, 574, 790, 924, 1120, 1771
BseMII CTCAG 7 cut(s) 46, 632, 749, 912, 1310, 1659, 1827
BseNI ACTGG 5 cut(s) 210, 279, 698, 1445, 1883
BseRI GAGGAG 4 cut(s) 684, 740, 743, 933
BseSI GKGCMC 1 cut(s) 1488
BseXI GCAGC 5 cut(s) 1066, 1079, 1088, 1150, 1779
BseYI CCCAGC 2 cut(s) 834, 1060
Bsh1236I CGCG 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 1215
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 78, 1567, 1613
BslFI GGGAC 2 cut(s) 50, 1389
BslI CCNNNNNNNGG 6 cut(s) 136, 574, 790, 924, 1120, 1771
BsmAI GTCTC 5 cut(s) 350, 575, 621, 1458, 1839
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 50, 1389
BsmI GAATGC 1 cut(s) 1513
Bso31I GGTCTC 1 cut(s) 1839
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 1191, 1215, 1488
Bsp143I GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
Bsp19I CCATGG 3 cut(s) 222, 550, 1677
BspACI CCGC 7 cut(s) 590, 712, 979, 1674, 1765, 1821, 1853
BspCNI CTCAG 7 cut(s) 45, 631, 748, 911, 1311, 1660, 1828
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 7 cut(s) 75, 606, 682, 732, 783, 839, 1125
BspMI ACCTGC 1 cut(s) 1722
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 296, 946
BspTNI GGTCTC 1 cut(s) 1839
BsrI ACTGG 5 cut(s) 210, 279, 698, 1445, 1883
BssMI GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
BssT1I CCWWGG 7 cut(s) 134, 222, 550, 569, 805, 1677, 1698
Bst2UI CCWGG 5 cut(s) 97, 609, 1143, 1360, 1728
Bst4CI ACNGT 7 cut(s) 340, 534, 1094, 1272, 1344, 1861, 1876
Bst6I CTCTTC 2 cut(s) 995, 1720
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 5 cut(s) 15, 219, 1684, 1758, 1833
BstDEI CTNAG 9 cut(s) 32, 618, 735, 772, 898, 1319, 1659, 1668, 1836
BstDSI CCRYGG 4 cut(s) 222, 550, 1271, 1677
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 2 cut(s) 315, 1356
BstFNI CGCG 1 cut(s) 712
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 3 cut(s) 513, 712, 1513
BstKTI GATC 9 cut(s) 145, 178, 291, 372, 457, 600, 897, 941, 1184
BstMAI GTCTC 5 cut(s) 350, 575, 621, 1458, 1839
BstMBI GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
BstMWI GCNNNNNNNGC 8 cut(s) 14, 310, 641, 1019, 1073, 1076, 1130, 1679
BstNI CCWGG 5 cut(s) 97, 609, 1143, 1360, 1728
BstNSI RCATGY 1 cut(s) 890
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 7 cut(s) 76, 77, 95, 607, 1141, 1358, 1726
BstSLI GKGCMC 1 cut(s) 1488
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 5 cut(s) 1066, 1079, 1088, 1150, 1779
BstV2I GAAGAC 1 cut(s) 1213
BstX2I RGATCY 4 cut(s) 288, 369, 894, 938
BstXI CCANNNNNNTGG 1 cut(s) 1297
BstYI RGATCY 4 cut(s) 288, 369, 894, 938
Bsu36I CCTNAGG 2 cut(s) 735, 1668
BtgI CCRYGG 4 cut(s) 222, 550, 1271, 1677
BtrI CACGTC 1 cut(s) 1204
BtsCI GGATG 2 cut(s) 315, 1356
BtsIMutI CAGTG 4 cut(s) 539, 1340, 1857, 1890
BveI ACCTGC 1 cut(s) 1722
Cac8I GCNNGC 5 cut(s) 15, 219, 1684, 1758, 1833
CfoI GCGC 3 cut(s) 513, 712, 1513
Cfr13I GGNCC 6 cut(s) 127, 781, 838, 1268, 1724, 1880
Cfr9I CCCGGG 1 cut(s) 77
CseI GACGC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 1102
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviQI GTAC 1 cut(s) 1102
DdeI CTNAG 9 cut(s) 32, 618, 735, 772, 898, 1319, 1659, 1668, 1836
DpnI GATC 9 cut(s) 144, 177, 290, 371, 456, 599, 896, 940, 1183
DpnII GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
DrdI GACNNNNNNGTC 1 cut(s) 1853
DseDI GACNNNNNNGTC 1 cut(s) 1853
EaeI YGGCCR 4 cut(s) 93, 633, 1111, 1754
Eam1104I CTCTTC 2 cut(s) 995, 1720
EarI CTCTTC 2 cut(s) 995, 1720
Eco130I CCWWGG 7 cut(s) 134, 222, 550, 569, 805, 1677, 1698
Eco147I AGGCCT 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 1191
Eco31I GGTCTC 1 cut(s) 1839
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 4 cut(s) 127, 838, 1268, 1724
Eco57I CTGAAG 3 cut(s) 885, 1535, 1637
Eco81I CCTNAGG 2 cut(s) 735, 1668
Eco88I CYCGRG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 818
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 5 cut(s) 95, 607, 1141, 1358, 1726
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 7 cut(s) 134, 222, 550, 569, 805, 1677, 1698
EcoT38I GRGCYC 1 cut(s) 1191
ErhI CCWWGG 7 cut(s) 134, 222, 550, 569, 805, 1677, 1698
Esp3I CGTCTC 1 cut(s) 575
FaqI GGGAC 2 cut(s) 50, 1389
Fnu4HI GCNGC 7 cut(s) 713, 1068, 1077, 1080, 1164, 1674, 1768
FokI GGATG 2 cut(s) 322, 1363
FriOI GRGCYC 1 cut(s) 1191
Fsp4HI GCNGC 7 cut(s) 713, 1068, 1077, 1080, 1164, 1674, 1768
FspBI CTAG 7 cut(s) 9, 14, 183, 452, 570, 1007, 1602
GlaI GCGC 3 cut(s) 512, 711, 1512
GluI GCNGC 7 cut(s) 713, 1068, 1077, 1080, 1164, 1674, 1768
GsaI CCCAGC 2 cut(s) 838, 1064
GsuI CTGGAG 2 cut(s) 681, 897
HaeII RGCGCY 1 cut(s) 514
HapII CCGG 3 cut(s) 78, 1567, 1613
HgaI GACGC 1 cut(s) 386
HhaI GCGC 3 cut(s) 513, 712, 1513
Hin6I GCGC 3 cut(s) 511, 710, 1511
HinP1I GCGC 3 cut(s) 511, 710, 1511
HinfI GANTC 7 cut(s) 249, 908, 1043, 1321, 1539, 1570, 1741
HpaII CCGG 3 cut(s) 78, 1567, 1613
HphI GGTGA 8 cut(s) 154, 199, 209, 830, 863, 968, 1467, 1754
Hpy166II GTNNAC 3 cut(s) 55, 156, 200
Hpy188III TCNNGA 5 cut(s) 411, 876, 1088, 1199, 1369
Hpy8I GTNNAC 3 cut(s) 55, 156, 200
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 9 cut(s) 76, 187, 649, 671, 745, 860, 1123, 1636, 1834
HpyCH4III ACNGT 7 cut(s) 340, 534, 1094, 1272, 1344, 1861, 1876
HpyCH4IV ACGT 3 cut(s) 172, 483, 1203
HpyCH4V TGCA 4 cut(s) 304, 376, 528, 1082
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 310, 641, 1019, 1073, 1076, 1130, 1679
HpyF3I CTNAG 9 cut(s) 32, 618, 735, 772, 898, 1319, 1659, 1668, 1836
HpySE526I ACGT 3 cut(s) 172, 483, 1203
HspAI GCGC 3 cut(s) 511, 710, 1511
Kzo9I GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
LmnI GCTCC 6 cut(s) 592, 610, 730, 1129, 1210, 1615
Lsp1109I GCAGC 5 cut(s) 1066, 1079, 1088, 1150, 1779
LweI GCATC 3 cut(s) 300, 554, 724
MaeI CTAG 7 cut(s) 9, 14, 183, 452, 570, 1007, 1602
MaeII ACGT 3 cut(s) 172, 483, 1203
MaeIII GTNAC 8 cut(s) 818, 851, 1032, 1283, 1338, 1436, 1473, 1855
MalI GATC 9 cut(s) 144, 177, 290, 371, 456, 599, 896, 940, 1183
MboI GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
MboII GAAGA 8 cut(s) 202, 221, 904, 965, 982, 1213, 1541, 1707
MflI RGATCY 4 cut(s) 288, 369, 894, 938
MhlI GDGCHC 3 cut(s) 1191, 1215, 1488
MlsI TGGCCA 2 cut(s) 95, 1756
MluNI TGGCCA 2 cut(s) 95, 1756
MlyI GAGTC 2 cut(s) 902, 1330
MmeI TCCRAC 4 cut(s) 154, 331, 942, 1779
Mox20I TGGCCA 2 cut(s) 95, 1756
MscI TGGCCA 2 cut(s) 95, 1756
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 3 cut(s) 171, 720, 1295
Msp20I TGGCCA 2 cut(s) 95, 1756
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 3 cut(s) 78, 1567, 1613
MspR9I CCNGG 7 cut(s) 78, 79, 97, 609, 1143, 1360, 1728
Mva1269I GAATGC 1 cut(s) 1513
MvaI CCWGG 5 cut(s) 97, 609, 1143, 1360, 1728
MvnI CGCG 1 cut(s) 712
MwoI GCNNNNNNNGC 8 cut(s) 14, 310, 641, 1019, 1073, 1076, 1130, 1679
NciI CCSGG 2 cut(s) 78, 79
NcoI CCATGG 3 cut(s) 222, 550, 1677
NdeII GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
NheI GCTAGC 1 cut(s) 13
NlaIV GGNNCC 7 cut(s) 75, 606, 682, 732, 783, 839, 1125
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 7 cut(s) 818, 851, 1032, 1338, 1436, 1473, 1855
NspI RCATGY 1 cut(s) 890
PceI AGGCCT 1 cut(s) 810
PctI GAATGC 1 cut(s) 1513
PfeI GAWTC 5 cut(s) 249, 1043, 1539, 1570, 1741
PkrI GCNGC 7 cut(s) 714, 1069, 1078, 1081, 1165, 1675, 1769
PleI GAGTC 2 cut(s) 902, 1329
PpsI GAGTC 2 cut(s) 902, 1329
Psp6I CCWGG 5 cut(s) 95, 607, 1141, 1358, 1726
PspEI GGTNACC 1 cut(s) 818
PspFI CCCAGC 2 cut(s) 834, 1060
PspGI CCWGG 5 cut(s) 95, 607, 1141, 1358, 1726
PspN4I GGNNCC 7 cut(s) 75, 606, 682, 732, 783, 839, 1125
PspPI GGNCC 6 cut(s) 127, 781, 838, 1268, 1724, 1880
PsuI RGATCY 4 cut(s) 288, 369, 894, 938
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 1 cut(s) 1103
RsaNI GTAC 1 cut(s) 1102
RseI CAYNNNNRTG 3 cut(s) 171, 720, 1295
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 7 cut(s) 713, 1068, 1077, 1080, 1164, 1674, 1768
Sau3AI GATC 9 cut(s) 142, 175, 288, 369, 454, 597, 894, 938, 1181
Sau96I GGNCC 6 cut(s) 127, 781, 838, 1268, 1724, 1880
SchI GAGTC 2 cut(s) 902, 1330
ScrFI CCNGG 7 cut(s) 78, 79, 97, 609, 1143, 1360, 1728
SduI GDGCHC 3 cut(s) 1191, 1215, 1488
SfaNI GCATC 3 cut(s) 300, 554, 724
SinI GGWCC 4 cut(s) 127, 838, 1268, 1724
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 171, 720, 1295
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 7 cut(s) 590, 712, 979, 1674, 1765, 1821, 1853
SspI AATATT 1 cut(s) 1750
SspMI CTAG 7 cut(s) 9, 14, 183, 452, 570, 1007, 1602
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 7 cut(s) 76, 77, 95, 607, 1141, 1358, 1726
StyI CCWWGG 7 cut(s) 134, 222, 550, 569, 805, 1677, 1698
TaaI ACNGT 7 cut(s) 340, 534, 1094, 1272, 1344, 1861, 1876
TaiI ACGT 3 cut(s) 175, 486, 1206
TaqI TCGA 4 cut(s) 410, 600, 950, 1230
TaqII GACCGA 1 cut(s) 1490
TauI GCSGC 2 cut(s) 715, 1676
TfiI GAWTC 5 cut(s) 249, 1043, 1539, 1570, 1741
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 4 cut(s) 539, 1347, 1864, 1890
TseFI GTSAC 7 cut(s) 818, 851, 1032, 1338, 1436, 1473, 1855
TseI GCWGC 5 cut(s) 1067, 1076, 1079, 1163, 1767
Tsp45I GTSAC 7 cut(s) 818, 851, 1032, 1338, 1436, 1473, 1855
TspDTI ATGAA 7 cut(s) 183, 407, 982, 1035, 1647, 1754, 1853
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 4 cut(s) 539, 1347, 1864, 1890
VpaK11BI GGWCC 4 cut(s) 127, 838, 1268, 1724
XapI RAATTY 3 cut(s) 957, 1468, 1802
XceI RCATGY 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmaI CCCGGG 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 569
XspI CTAG 7 cut(s) 9, 14, 183, 452, 570, 1007, 1602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.