Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000865.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

4548 .. 5762

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggcagcagctattgcttccatgacagccaggctagcgaccaagttgtcgctcagagagggtgaggaacctgttgacctaggaaaccttggggtttcggagaaggaatttctcgctcgtcgtttctacttggtgaggaaactcaacacttgtagggcggtggttttggattcttttaggagtgcgatgcgttcaatgtggagattgacggggactgtggaggttcaaccacgcggggatcgttttctgtttacgttcactcttgaacgtgatgtcgccctggtgaagaagggaggcccttggagttttcagctggctatgcttttgttgaatgactacgatggcttttcagtgattgatgccgtgaagcttgactttgtttggatctgggttgggatccatgggcttccaccgggtatcttgacggcacccactgtccagctggtgggaggaacgatcggtgaggttttagaggttgatcaaccggttatccaacgtggtgatgcttgggttcggattactttggccatcaatgatccagtgcgtttggatcgtcatgttcggaggtgttcaagggaggaggtggaggcgactgacattgtggtggacgatggtttacagcaggttccgaggctggctcttccagggctcgtgtttagggctaattcccagccatctctttccttgccttcaaatttcaaggtcccaactctgttgaagaagaaaccagtgcagattcgtcctctcttggaggtggaatcttcgcctgggtctaaagatacctctgctattgaccctgtggttgggacgtgtcgccctagggaagaggaggatgaggatggtggaaaacgagctaaacatagcttagcattggttccgggcattctgcaaccggagaacctcgggctggaattctcatctgagggtttggtggaggtgaaggtaacgtcgcctcccaaagtgtacaagaagaagggcaggcctcgaggacatagaaataaggtcaagaaggcgatgtctgtgagtgagggttcggggtccatggtctctcttgaggatggcgttggtaatgcgcctggacttgagggagcgacgactccgccagattcccgtactctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

373

Amino Acids

40.79

Weight (kDa)

8.88

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AbsI	CCTCGAGG	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	158, 234, 1100
AclWI	GGATC	6 cut(s)	246, 391, 392, 404, 530, 558
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	107, 694, 911
AfaI	GTAC	2 cut(s)	965, 1114
AfiI	CCNNNNNNNGG	3 cut(s)	445, 803, 907
AflIII	ACRYGT	1 cut(s)	809
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	8 cut(s)	195, 227, 266, 331, 573, 693, 700, 718
AjiI	CACGTC	1 cut(s)	810
AjnI	CCWGG	5 cut(s)	29, 279, 643, 766, 1075
AluBI	AGCT	6 cut(s)	11, 313, 370, 442, 854, 864
AluI	AGCT	6 cut(s)	11, 313, 370, 442, 854, 864
Alw26I	GTCTC	1 cut(s)	1051
AlwI	GGATC	6 cut(s)	246, 391, 392, 404, 530, 558
Ama87I	CYCGRG	2 cut(s)	902, 984
AoxI	GGCC	3 cut(s)	295, 525, 980
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	3 cut(s)	107, 694, 911
AsiGI	ACCGGT	1 cut(s)	484
AspA2I	CCTAGG	2 cut(s)	79, 818
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	3 cut(s)	296, 703, 1038
AsuC2I	CCSGG	2 cut(s)	414, 879
AsuHPI	GGTGA	6 cut(s)	74, 145, 295, 473, 512, 949
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	2 cut(s)	902, 984
AvaII	GGWCC	2 cut(s)	703, 1038
AvrII	CCTAGG	2 cut(s)	79, 818
BalI	TGGCCA	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	17, 20
BccI	CCATC	6 cut(s)	335, 536, 605, 682, 833, 1052
BceAI	ACGGC	2 cut(s)	347, 441
BciT130I	CCWGG	5 cut(s)	31, 281, 645, 768, 1077
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	414, 879
BcoDI	GTCTC	1 cut(s)	1051
BfaI	CTAG	3 cut(s)	35, 80, 819
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	2 cut(s)	6, 9
BlnI	CCTAGG	2 cut(s)	79, 818
BlpI	GCTNAGC	1 cut(s)	865
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	7 cut(s)	31, 281, 414, 645, 768, 879, 1077
Bme18I	GGWCC	2 cut(s)	703, 1038
BmeT110I	CYCGRG	2 cut(s)	902, 984
BmgBI	CACGTC	1 cut(s)	810
BmgT120I	GGNCC	3 cut(s)	296, 703, 1038
BmiI	GGNNCC	7 cut(s)	69, 398, 429, 627, 705, 876, 1039
BmrFI	CCNGG	7 cut(s)	31, 281, 414, 645, 768, 879, 1077
BmsI	GCATC	3 cut(s)	177, 349, 493
BmtI	GCTAGC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
Bpu1102I	GCTNAGC	1 cut(s)	865
BpuEI	CTTGAG	2 cut(s)	1073, 1103
BpuMI	CCSGG	2 cut(s)	414, 879
BsaI	GGTCTC	1 cut(s)	1051
BsaWI	WCCGGW	2 cut(s)	484, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 803, 907
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	539, 728
BseBI	CCWGG	5 cut(s)	31, 281, 645, 768, 1077
BseGI	GGATG	3 cut(s)	838, 844, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	445, 803, 907
BseMII	CTCAG	2 cut(s)	67, 912
BseNI	ACTGG	2 cut(s)	539, 728
BseRI	GAGGAG	2 cut(s)	593, 842
BseXI	GCAGC	2 cut(s)	17, 20
BseYI	CCCAGC	1 cut(s)	669
BsgI	GTGCAG	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	297, 527, 982
BshNI	GGYRCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	902, 984
BsiSI	CCGG	4 cut(s)	413, 485, 878, 893
BslFI	GGGAC	3 cut(s)	226, 689, 820
BslI	CCNNNNNNNGG	3 cut(s)	445, 803, 907
BsmAI	GTCTC	1 cut(s)	1051
BsmFI	GGGAC	3 cut(s)	226, 689, 820
BsmI	GAATGC	1 cut(s)	882
BsnI	GGCC	3 cut(s)	297, 527, 982
Bso31I	GGTCTC	1 cut(s)	1051
BsoBI	CYCGRG	2 cut(s)	902, 984
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
Bsp1720I	GCTNAGC	1 cut(s)	865
Bsp19I	CCATGG	2 cut(s)	400, 1041
BspACI	CCGC	3 cut(s)	158, 234, 1100
BspANI	GGCC	3 cut(s)	297, 527, 982
BspCNI	CTCAG	2 cut(s)	66, 913
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	7 cut(s)	69, 398, 429, 627, 705, 876, 1039
BspMI	ACCTGC	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	6 cut(s)	246, 391, 392, 404, 530, 558
BspQI	GCTCTTC	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1051
BsrFI	RCCGGY	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	2 cut(s)	539, 728
BssAI	RCCGGY	1 cut(s)	484
BssMI	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
BssSI	CACGAG	1 cut(s)	650
BssT1I	CCWWGG	6 cut(s)	79, 88, 299, 400, 818, 1041
Bst2BI	CACGAG	1 cut(s)	650
Bst2UI	CCWGG	5 cut(s)	31, 281, 645, 768, 1077
Bst4CI	ACNGT	2 cut(s)	217, 436
Bst6I	CTCTTC	2 cut(s)	645, 819
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	4 cut(s)	36, 315, 636, 980
BstDEI	CTNAG	3 cut(s)	53, 865, 921
BstDSI	CCRYGG	2 cut(s)	400, 1041
BstF5I	GGATG	3 cut(s)	838, 844, 1063
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	7 cut(s)	241, 387, 399, 459, 481, 538, 553
BstMAI	GTCTC	1 cut(s)	1051
BstMBI	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 35, 319
BstNI	CCWGG	5 cut(s)	31, 281, 645, 768, 1077
BstSCI	CCNGG	7 cut(s)	29, 279, 412, 643, 766, 877, 1075
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	17, 20
BstX2I	RGATCY	2 cut(s)	384, 396
BstYI	RGATCY	2 cut(s)	384, 396
BsuRI	GGCC	3 cut(s)	297, 527, 982
BtgI	CCRYGG	2 cut(s)	400, 1041
BtgZI	GCGATG	2 cut(s)	200, 1028
BtrI	CACGTC	1 cut(s)	810
BtsCI	GGATG	3 cut(s)	838, 844, 1063
BtsIMutI	CAGTG	4 cut(s)	357, 432, 546, 735
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	4 cut(s)	36, 315, 636, 980
CfoI	GCGC	1 cut(s)	1075
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	3 cut(s)	296, 703, 1038
Csp6I	GTAC	2 cut(s)	964, 1113
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	4 cut(s)	22, 401, 557, 1042
CviQI	GTAC	2 cut(s)	964, 1113
DdeI	CTNAG	3 cut(s)	53, 865, 921
DpnI	GATC	7 cut(s)	240, 386, 398, 458, 480, 537, 552
DpnII	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	645, 819
EarI	CTCTTC	2 cut(s)	645, 819
EciI	GGCGGA	1 cut(s)	1089
Eco130I	CCWWGG	6 cut(s)	79, 88, 299, 400, 818, 1041
Eco147I	AGGCCT	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	651
Eco31I	GGTCTC	1 cut(s)	1051
Eco47I	GGWCC	2 cut(s)	703, 1038
Eco88I	CYCGRG	2 cut(s)	902, 984
EcoO109I	RGGNCCY	2 cut(s)	296, 703
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	5 cut(s)	29, 279, 643, 766, 1075
EcoT14I	CCWWGG	6 cut(s)	79, 88, 299, 400, 818, 1041
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	6 cut(s)	79, 88, 299, 400, 818, 1041
FaeI	CATG	4 cut(s)	25, 404, 560, 1045
FaiI	YATR	7 cut(s)	23, 320, 402, 558, 861, 993, 1043
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	3 cut(s)	226, 689, 820
FatI	CATG	4 cut(s)	21, 400, 556, 1041
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	3 cut(s)	845, 851, 1070
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	3 cut(s)	35, 80, 819
GlaI	GCGC	1 cut(s)	1074
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	673
HaeIII	GGCC	3 cut(s)	297, 527, 982
HapII	CCGG	4 cut(s)	413, 485, 878, 893
HhaI	GCGC	1 cut(s)	1075
Hin1II	CATG	4 cut(s)	25, 404, 560, 1045
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	5 cut(s)	170, 736, 758, 1096, 1106
HpaII	CCGG	4 cut(s)	413, 485, 878, 893
HphI	GGTGA	6 cut(s)	74, 145, 295, 473, 512, 949
Hpy166II	GTNNAC	6 cut(s)	76, 252, 258, 607, 617, 964
Hpy188I	TCNGA	6 cut(s)	56, 100, 516, 564, 630, 922
Hpy188III	TCNNGA	4 cut(s)	263, 421, 1006, 1052
Hpy8I	GTNNAC	6 cut(s)	76, 252, 258, 607, 617, 964
Hpy99I	CGWCG	3 cut(s)	123, 952, 1096
HpyAV	CCTTC	6 cut(s)	97, 283, 699, 934, 967, 1003
HpyCH4III	ACNGT	2 cut(s)	217, 436
HpyCH4IV	ACGT	5 cut(s)	254, 268, 496, 809, 947
HpyCH4V	TGCA	2 cut(s)	733, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 35, 319
HpyF3I	CTNAG	3 cut(s)	53, 865, 921
HpySE526I	ACGT	5 cut(s)	254, 268, 496, 809, 947
Hsp92II	CATG	4 cut(s)	25, 404, 560, 1045
HspAI	GCGC	1 cut(s)	1073
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	1 cut(s)	1088
Lsp1109I	GCAGC	2 cut(s)	17, 20
LweI	GCATC	3 cut(s)	177, 349, 493
MaeI	CTAG	3 cut(s)	35, 80, 819
MaeII	ACGT	5 cut(s)	254, 268, 496, 809, 947
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	7 cut(s)	240, 386, 398, 458, 480, 537, 552
MboI	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
MboII	GAAGA	7 cut(s)	298, 632, 730, 733, 753, 836, 982
MflI	RGATCY	2 cut(s)	384, 396
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	4 cut(s)	107, 664, 694, 911
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	1090
MmeI	TCCRAC	1 cut(s)	517
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	313, 442
MspI	CCGG	4 cut(s)	413, 485, 878, 893
MspR9I	CCNGG	7 cut(s)	31, 281, 414, 645, 768, 879, 1077
Mva1269I	GAATGC	1 cut(s)	882
MvaI	CCWGG	5 cut(s)	31, 281, 645, 768, 1077
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	14, 35, 319
NciI	CCSGG	2 cut(s)	414, 879
NcoI	CCATGG	2 cut(s)	400, 1041
NdeII	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	25, 404, 560, 1045
NlaIV	GGNNCC	7 cut(s)	69, 398, 429, 627, 705, 876, 1039
PaeR7I	CTCGAG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	982
PciSI	GCTCTTC	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	882
PfeI	GAWTC	4 cut(s)	170, 736, 758, 1106
PflMI	CCANNNNNTGG	1 cut(s)	445
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	7, 10
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	1 cut(s)	1090
PpsI	GAGTC	1 cut(s)	1090
PpuMI	RGGWCCY	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	5 cut(s)	29, 279, 643, 766, 1075
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	5 cut(s)	29, 279, 643, 766, 1075
PspN4I	GGNNCC	7 cut(s)	69, 398, 429, 627, 705, 876, 1039
PspPI	GGNCC	3 cut(s)	296, 703, 1038
PspPPI	RGGWCCY	1 cut(s)	703
PspXI	VCTCGAGB	1 cut(s)	984
PsuI	RGATCY	2 cut(s)	384, 396
PvuI	CGATCG	1 cut(s)	459
PvuII	CAGCTG	2 cut(s)	313, 442
RsaI	GTAC	2 cut(s)	965, 1114
RsaNI	GTAC	2 cut(s)	964, 1113
RseI	CAYNNNNRTG	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	645
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	7 cut(s)	238, 384, 396, 456, 478, 535, 550
Sau96I	GGNCC	3 cut(s)	296, 703, 1038
SchI	GAGTC	1 cut(s)	1090
ScrFI	CCNGG	7 cut(s)	31, 281, 414, 645, 768, 879, 1077
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	3 cut(s)	177, 349, 493
Sfr274I	CTCGAG	1 cut(s)	984
SinI	GGWCC	2 cut(s)	703, 1038
SlaI	CTCGAG	1 cut(s)	984
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	3 cut(s)	984, 1052, 1082
SmoI	CTYRAG	3 cut(s)	984, 1052, 1082
Sse9I	AATT	4 cut(s)	107, 664, 694, 911
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	3 cut(s)	158, 234, 1100
SspMI	CTAG	3 cut(s)	35, 80, 819
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	7 cut(s)	29, 279, 412, 643, 766, 877, 1075
StyI	CCWWGG	6 cut(s)	79, 88, 299, 400, 818, 1041
TaaI	ACNGT	2 cut(s)	217, 436
TaiI	ACGT	5 cut(s)	257, 271, 499, 812, 950
TaqI	TCGA	1 cut(s)	985
TasI	AATT	4 cut(s)	107, 664, 694, 911
TatI	WGTACW	1 cut(s)	963
TfiI	GAWTC	4 cut(s)	170, 736, 758, 1106
TscAI	CASTG	4 cut(s)	357, 439, 546, 735
TseI	GCWGC	2 cut(s)	5, 8
TspRI	CASTG	4 cut(s)	357, 439, 546, 735
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	703, 1038
XapI	RAATTY	3 cut(s)	107, 694, 911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	984
XmaJI	CCTAGG	2 cut(s)	79, 818
XspI	CTAG	3 cut(s)	35, 80, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.