Rmu_sc0000253.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000253.1
OG0000172
Physical Location & Seq
Forward (+)
88724 .. 89635
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000253.1_g000023.1.cds

Sequence Viewer

Length: 912 bp
atgattctcctgaatgactacgatgggttttcggagctctctgcagtgaagttggattttgtttggatctgggttacacttgatggtatacctccgggtatcttgacagaacctaccgtccggttggttggtgggacaattggcgaggtgctggaggtggatcgtccggcgctgagtaggggcgatgctcgggttaggcttgttctctctatccatgatccggtgcgtctcgaccgtagggttagggtttctccctctgacgtcctaaccctaagattaaggtatgaaaggctccttgggcgttgccactcctgtgctatgctgaatcatggtggccaacgatgccctagggtggacgagttggcagctgatgctggggcggagcagggatcacaaacggctggtggaccgatcgttccagcccttgtctttagggcaaacgttcagccctccatctcttctccattgatctctactttcaaggtccctggcttgtcgaagaagaaaccggtacagattcgtgagcttcctgcgcttgcgttgtctggtactgagggtacctccacccaaactcaagtggtggggatgcgccggcccagggctgaggatgctcctgcggatggtaagcgagccaagcatggcttggctttggcgccggtaaccctgcaaccggaaaatcttgggttcgagttttctgatgcaagtttggtaggtgggaagctgtctcaaggccctaaggtctacaagaagaagggcaggcctcggggtttgcgaaacaaagtcaaagcggcatcggtgtcagccaccgtggatgactctgggtctatggagtcggggccttttgatggtggttctgttggcatacctgagaagcctaatgggctggctaagcctgtttcccagtccgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

303

Amino Acids

32.17

Weight (kDa)

9.61

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 2 cut(s) 557, 652
AccI GTMKAC 2 cut(s) 88, 741
AciI CCGC 3 cut(s) 380, 617, 788
AclI AACGTT 1 cut(s) 441
AclWI GGATC 4 cut(s) 74, 168, 212, 397
AcoI YGGCCR 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 261, 653
AfaI GTAC 3 cut(s) 513, 550, 559
AfiI CCNNNNNNNGG 7 cut(s) 220, 352, 598, 620, 670, 845, 906
AgeI ACCGGT 1 cut(s) 508
AgsI TTSAA 1 cut(s) 481
AhdI GACNNNNNGTC 1 cut(s) 820
AjnI CCWGG 2 cut(s) 487, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 312
AloI GAACNNNNNNTCC 4 cut(s) 102, 134, 399, 431
AluBI AGCT 4 cut(s) 37, 368, 526, 721
AluI AGCT 4 cut(s) 37, 368, 526, 721
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 233, 729
AlwI GGATC 4 cut(s) 74, 168, 212, 397
Ama87I CYCGRG 2 cut(s) 189, 762
AoxI GGCC 5 cut(s) 334, 593, 730, 758, 836
ApeKI GCWGC 1 cut(s) 365
AsiGI ACCGGT 1 cut(s) 508
Asp718I GGTACC 1 cut(s) 557
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 4 cut(s) 172, 535, 591, 655
AspS9I GGNCC 5 cut(s) 407, 484, 594, 731, 836
AsuC2I CCSGG 2 cut(s) 96, 907
AvaI CYCGRG 2 cut(s) 189, 762
AvaII GGWCC 2 cut(s) 407, 484
AvrII CCTAGG 1 cut(s) 347
AxyI CCTNAGG 1 cut(s) 735
BalI TGGCCA 1 cut(s) 336
BanI GGYRCC 2 cut(s) 557, 652
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 377
BccI CCATC 5 cut(s) 17, 77, 461, 614, 839
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 489, 598
BcnI CCSGG 2 cut(s) 96, 907
BcoDI GTCTC 2 cut(s) 233, 729
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 2 cut(s) 173, 656
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 2 cut(s) 366, 789
BlnI CCTAGG 1 cut(s) 347
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 2 cut(s) 367, 790
Bme1390I CCNGG 4 cut(s) 96, 489, 598, 907
Bme18I GGWCC 2 cut(s) 407, 484
BmeRI GACNNNNNGTC 1 cut(s) 820
BmeT110I CYCGRG 2 cut(s) 189, 762
BmgT120I GGNCC 5 cut(s) 407, 484, 594, 731, 836
BmiI GGNNCC 5 cut(s) 293, 486, 559, 654, 837
BmrFI CCNGG 4 cut(s) 96, 489, 598, 907
BmrI ACTGGG 1 cut(s) 895
BmsI GCATC 7 cut(s) 175, 332, 361, 576, 598, 688, 800
BmuI ACTGGG 1 cut(s) 895
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 558, 711
BpuMI CCSGG 2 cut(s) 96, 907
BsaHI GRCGYC 2 cut(s) 261, 653
BsaJI CCNNGG 7 cut(s) 295, 347, 487, 596, 597, 761, 807
BsaWI WCCGGW 4 cut(s) 120, 220, 508, 670
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 352, 598, 620, 670, 845, 906
Bse118I RCCGGY 3 cut(s) 508, 591, 655
Bse1I ACTGG 1 cut(s) 901
Bse21I CCTNAGG 1 cut(s) 735
BseBI CCWGG 2 cut(s) 489, 598
BseDI CCNNGG 7 cut(s) 295, 347, 487, 596, 597, 761, 807
BseGI GGATG 4 cut(s) 591, 613, 625, 817
BseLI CCNNNNNNNGG 7 cut(s) 220, 352, 598, 620, 670, 845, 906
BseMII CTCAG 4 cut(s) 164, 543, 594, 858
BseNI ACTGG 1 cut(s) 901
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 374
Bsh1285I CGRYCG 2 cut(s) 235, 414
BshFI GGCC 5 cut(s) 336, 595, 732, 760, 838
BshNI GGYRCC 2 cut(s) 557, 652
BshTI ACCGGT 1 cut(s) 508
BsiEI CGRYCG 2 cut(s) 235, 414
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 189, 762
BsiSI CCGG 9 cut(s) 95, 121, 167, 221, 509, 592, 656, 671, 906
BslFI GGGAC 2 cut(s) 148, 470
BslI CCNNNNNNNGG 7 cut(s) 220, 352, 598, 620, 670, 845, 906
BsmAI GTCTC 2 cut(s) 233, 729
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 2 cut(s) 148, 470
BsnI GGCC 5 cut(s) 336, 595, 732, 760, 838
BsoBI CYCGRG 2 cut(s) 189, 762
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 6 cut(s) 66, 160, 217, 389, 411, 468
Bsp1720I GCTNAGC 1 cut(s) 888
BspACI CCGC 3 cut(s) 380, 617, 788
BspANI GGCC 5 cut(s) 336, 595, 732, 760, 838
BspCNI CTCAG 4 cut(s) 165, 544, 595, 859
BspLI GGNNCC 5 cut(s) 293, 486, 559, 654, 837
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 4 cut(s) 74, 168, 212, 397
BspT107I GGYRCC 2 cut(s) 557, 652
BsrFI RCCGGY 3 cut(s) 508, 591, 655
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 3 cut(s) 508, 591, 655
BssECI CCNNGG 7 cut(s) 295, 347, 487, 596, 597, 761, 807
BssMI GATC 6 cut(s) 66, 160, 217, 389, 411, 468
BssNAI GTATAC 1 cut(s) 89
BssNI GRCGYC 2 cut(s) 261, 653
BssT1I CCWWGG 2 cut(s) 295, 347
Bst1107I GTATAC 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 489, 598
Bst4CI ACNGT 3 cut(s) 118, 236, 808
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 2 cut(s) 261, 653
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 5 cut(s) 537, 593, 630, 758, 885
BstDEI CTNAG 7 cut(s) 173, 272, 552, 603, 735, 867, 888
BstDSI CCRYGG 1 cut(s) 807
BstEII GGTNACC 1 cut(s) 658
BstF5I GGATG 4 cut(s) 591, 613, 625, 817
BstH2I RGCGCY 2 cut(s) 173, 656
BstHHI GCGC 4 cut(s) 172, 535, 591, 655
BstKTI GATC 6 cut(s) 69, 163, 220, 392, 414, 471
BstMAI GTCTC 2 cut(s) 233, 729
BstMBI GATC 6 cut(s) 66, 160, 217, 389, 411, 468
BstMCI CGRYCG 2 cut(s) 235, 414
BstMWI GCNNNNNNNGC 8 cut(s) 298, 342, 371, 532, 608, 634, 880, 889
BstNI CCWGG 2 cut(s) 489, 598
BstPI GGTNACC 1 cut(s) 658
BstSCI CCNGG 4 cut(s) 94, 487, 596, 905
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BstZ17I GTATAC 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 5 cut(s) 336, 595, 732, 760, 838
BtgI CCRYGG 1 cut(s) 807
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 591, 613, 625, 817
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 5 cut(s) 537, 593, 630, 758, 885
CfoI GCGC 4 cut(s) 172, 535, 591, 655
Cfr10I RCCGGY 3 cut(s) 508, 591, 655
Cfr13I GGNCC 5 cut(s) 407, 484, 594, 731, 836
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 512, 549, 558
CspAI ACCGGT 1 cut(s) 508
CviAII CATG 3 cut(s) 215, 329, 638
CviQI GTAC 3 cut(s) 512, 549, 558
DdeI CTNAG 7 cut(s) 173, 272, 552, 603, 735, 867, 888
DinI GGCGCC 1 cut(s) 654
DpnI GATC 6 cut(s) 68, 162, 219, 391, 413, 470
DpnII GATC 6 cut(s) 66, 160, 217, 389, 411, 468
DriI GACNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 463
Eam1105I GACNNNNNGTC 1 cut(s) 820
EarI CTCTTC 1 cut(s) 463
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 295, 347
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 407, 484
Eco53kI GAGCTC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 735
Eco88I CYCGRG 2 cut(s) 189, 762
Eco91I GGTNACC 1 cut(s) 658
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 3 cut(s) 484, 731, 836
EcoO65I GGTNACC 1 cut(s) 658
EcoRII CCWGG 2 cut(s) 487, 596
EcoT14I CCWWGG 2 cut(s) 295, 347
EcoT38I GRGCYC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 654
EheI GGCGCC 1 cut(s) 654
ErhI CCWWGG 2 cut(s) 295, 347
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 3 cut(s) 218, 332, 641
FaiI YATR 8 cut(s) 89, 216, 285, 320, 330, 639, 827, 863
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 2 cut(s) 148, 470
FatI CATG 3 cut(s) 214, 328, 637
FblI GTMKAC 2 cut(s) 88, 741
Fnu4HI GCNGC 2 cut(s) 366, 789
FokI GGATG 4 cut(s) 598, 620, 632, 824
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 366, 789
FspBI CTAG 1 cut(s) 348
GlaI GCGC 4 cut(s) 171, 534, 590, 654
GluI GCNGC 2 cut(s) 366, 789
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 2 cut(s) 173, 656
HaeIII GGCC 5 cut(s) 336, 595, 732, 760, 838
HapII CCGG 9 cut(s) 95, 121, 167, 221, 509, 592, 656, 671, 906
HgaI GACGC 1 cut(s) 215
HhaI GCGC 4 cut(s) 172, 535, 591, 655
Hin1I GRCGYC 2 cut(s) 261, 653
Hin1II CATG 3 cut(s) 218, 332, 641
Hin6I GCGC 4 cut(s) 170, 533, 589, 653
HinP1I GCGC 4 cut(s) 170, 533, 589, 653
HinfI GANTC 5 cut(s) 4, 325, 517, 815, 830
HpaII CCGG 9 cut(s) 95, 121, 167, 221, 509, 592, 656, 671, 906
Hpy166II GTNNAC 4 cut(s) 89, 355, 407, 742
Hpy188I TCNGA 3 cut(s) 34, 259, 697
Hpy188III TCNNGA 4 cut(s) 10, 103, 230, 521
Hpy8I GTNNAC 4 cut(s) 89, 355, 407, 742
HpyAV CCTTC 1 cut(s) 745
HpyCH4III ACNGT 3 cut(s) 118, 236, 808
HpyCH4IV ACGT 2 cut(s) 261, 441
HpyCH4V TGCA 3 cut(s) 44, 667, 701
HpyF10VI GCNNNNNNNGC 8 cut(s) 298, 342, 371, 532, 608, 634, 880, 889
HpyF3I CTNAG 7 cut(s) 173, 272, 552, 603, 735, 867, 888
HpySE526I ACGT 2 cut(s) 261, 441
Hsp92I GRCGYC 2 cut(s) 261, 653
Hsp92II CATG 3 cut(s) 218, 332, 641
HspAI GCGC 4 cut(s) 170, 533, 589, 653
KasI GGCGCC 1 cut(s) 652
KpnI GGTACC 1 cut(s) 561
KroI GCCGGC 1 cut(s) 591
KroNI GCCGGC 1 cut(s) 593
Kzo9I GATC 6 cut(s) 66, 160, 217, 389, 411, 468
LmnI GCTCC 4 cut(s) 34, 297, 382, 616
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 7 cut(s) 175, 332, 361, 576, 598, 688, 800
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 261, 441
MaeIII GTNAC 2 cut(s) 73, 658
MalI GATC 6 cut(s) 68, 162, 219, 391, 413, 470
MboI GATC 6 cut(s) 66, 160, 217, 389, 411, 468
MboII GAAGA 4 cut(s) 450, 511, 514, 760
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 336
Mly113I GGCGCC 1 cut(s) 653
MlyI GAGTC 2 cut(s) 809, 839
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 9 cut(s) 102, 139, 148, 265, 460, 547, 571, 598, 771
Mox20I TGGCCA 1 cut(s) 336
MroNI GCCGGC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 9 cut(s) 95, 121, 167, 221, 509, 592, 656, 671, 906
MspR9I CCNGG 4 cut(s) 96, 489, 598, 907
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 2 cut(s) 489, 598
MwoI GCNNNNNNNGC 8 cut(s) 298, 342, 371, 532, 608, 634, 880, 889
NaeI GCCGGC 1 cut(s) 593
NarI GGCGCC 1 cut(s) 653
NciI CCSGG 2 cut(s) 96, 907
NdeII GATC 6 cut(s) 66, 160, 217, 389, 411, 468
NgoMIV GCCGGC 1 cut(s) 591
NlaIII CATG 3 cut(s) 218, 332, 641
NlaIV GGNNCC 5 cut(s) 293, 486, 559, 654, 837
OliI CACNNNNGTG 1 cut(s) 312
PasI CCCWGGG 1 cut(s) 597
PceI AGGCCT 1 cut(s) 760
PcsI WCGNNNNNNNCGW 1 cut(s) 769
PdiI GCCGGC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 4, 325, 517
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 2 cut(s) 367, 790
Ple19I CGATCG 1 cut(s) 414
PleI GAGTC 2 cut(s) 809, 838
PluTI GGCGCC 1 cut(s) 656
PpsI GAGTC 2 cut(s) 809, 838
PpuMI RGGWCCY 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 39
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 2 cut(s) 487, 596
PspEI GGTNACC 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 487, 596
PspN4I GGNNCC 5 cut(s) 293, 486, 559, 654, 837
PspPI GGNCC 5 cut(s) 407, 484, 594, 731, 836
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 66
PvuI CGATCG 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 3 cut(s) 513, 550, 559
RsaNI GTAC 3 cut(s) 512, 549, 558
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 366, 789
Sau3AI GATC 6 cut(s) 66, 160, 217, 389, 411, 468
Sau96I GGNCC 5 cut(s) 407, 484, 594, 731, 836
SchI GAGTC 2 cut(s) 809, 839
ScrFI CCNGG 4 cut(s) 96, 489, 598, 907
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 7 cut(s) 175, 332, 361, 576, 598, 688, 800
SfcI CTRYAG 1 cut(s) 42
SfoI GGCGCC 1 cut(s) 654
SinI GGWCC 2 cut(s) 407, 484
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 573, 726
SmoI CTYRAG 2 cut(s) 573, 726
Sse9I AATT 1 cut(s) 138
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 3 cut(s) 380, 617, 788
SspDI GGCGCC 1 cut(s) 652
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 4 cut(s) 94, 487, 596, 905
StyI CCWWGG 2 cut(s) 295, 347
TaaI ACNGT 3 cut(s) 118, 236, 808
TaiI ACGT 2 cut(s) 264, 444
TaqI TCGA 3 cut(s) 231, 497, 687
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 3 cut(s) 4, 325, 517
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 51
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 407, 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmaJI CCTAGG 1 cut(s) 347
XmiI GTMKAC 2 cut(s) 88, 741
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.