FvH4_5g29700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000172
Physical Location & Seq
Reverse (-)
20639105 .. 20640122
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29700.t1

Sequence Viewer

Length: 786 bp
ATGACAACGGAAGAGAAGGAACAAAAGAGAGAAACAAGAAGAAACAGGAAGGATAGGGTTTTCTTTGGGAGGAGTATGCTTTTAATAAGGAGAAGGTCTGAAAGGTGTTGTGATCTGAACTATCAACTAGCTTTAGTGAATGTGTTCCAATTTCGATTTGGTTGTGCTGACCTTCCGGTGGCCCTCACAACAGCAGCAACAAGAAGATTGGTTGGAGAGACCATTGGCCCTGTCCTCGAGGTGGACAACCGTGGCATCAATCACGGTGTGGTGCAAGTGAGGCTCACCCTTCCTCTACATGAACCGCCCGAGCCACATGTGGTTGCTGCAGCAGCGATGCCTACTGTACCATCTATGGTGTTTCGGGAAAACATCCAAGCCTTTCTCTCGGTTCCTTTGCCTCTTCTTTCTCTGGTTGCAAAAGAGAAGAAAGCAATTTCAATCCAGGATGTTCGGCATTTCCCTCCCCAACAAAGATCATTGGTGTCCGTAGAGGTAGAGAGGAGGAAGACGATGCAAATGGCAAGCGACTCAAGCATGCCTTGCCTTTGGTTTCGGTGGGATCTGAAGGAACACTGGGAATTGTGCACACTGGGAAGTCTCCTAAGAAGCGTGGGGTCTGAAGGAACACTGGGAATTGTGCACACTGGGAAGTCTCCTCAGAAGCGTGGGCGTCCTCGTGGTAGCAAGAACAAGAAGAAGAATCATAGAGACACCTCAGATTCCATGGCATCCGGTTTGGTTGTGGGAGAGCTAGATACTACCTTTGAAGCTGATGCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

262

Amino Acids

29.42

Weight (kDa)

9.77

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 236
AciI CCGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 570
AcuI CTGAAG 2 cut(s) 587, 642
AcyI GRCGYC 1 cut(s) 673
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 2 cut(s) 178, 241
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 441, 770
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 3 cut(s) 131, 754, 773
AluI AGCT 3 cut(s) 131, 754, 773
Alw21I GWGCWC 2 cut(s) 590, 645
Alw26I GTCTC 4 cut(s) 212, 605, 660, 705
Alw44I GTGCAC 2 cut(s) 586, 641
AlwI GGATC 1 cut(s) 570
Ama87I CYCGRG 2 cut(s) 236, 308
AoxI GGCC 2 cut(s) 180, 226
ApaLI GTGCAC 2 cut(s) 586, 641
ApeKI GCWGC 4 cut(s) 194, 326, 329, 332
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 181, 227
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 2 cut(s) 236, 308
BaeGI GKGCMC 2 cut(s) 590, 645
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 590, 645
BbvI GCAGC 4 cut(s) 206, 313, 341, 344
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 446
BcoDI GTCTC 4 cut(s) 212, 605, 660, 705
BfaI CTAG 2 cut(s) 128, 755
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 4 cut(s) 195, 327, 330, 333
BlsI GCNGC 4 cut(s) 196, 328, 331, 334
Bme1390I CCNGG 1 cut(s) 446
BmeT110I CYCGRG 2 cut(s) 236, 308
BmgT120I GGNCC 2 cut(s) 181, 227
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 4 cut(s) 586, 602, 641, 657
BmsI GCATC 5 cut(s) 264, 327, 504, 740, 766
BmuI ACTGGG 4 cut(s) 586, 602, 641, 657
BpiI GAAGAC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 673
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 250, 726
BsaWI WCCGGW 2 cut(s) 175, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 241
Bse1I ACTGG 4 cut(s) 581, 597, 636, 652
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 2 cut(s) 250, 726
BseGI GGATG 3 cut(s) 372, 454, 731
BseLI CCNNNNNNNGG 2 cut(s) 178, 241
BseMII CTCAG 2 cut(s) 674, 732
BseNI ACTGG 4 cut(s) 581, 597, 636, 652
BseRI GAGGAG 3 cut(s) 85, 517, 648
BseSI GKGCMC 2 cut(s) 590, 645
BseXI GCAGC 4 cut(s) 206, 313, 341, 344
BshFI GGCC 2 cut(s) 182, 228
BsiHKAI GWGCWC 2 cut(s) 590, 645
BsiHKCI CYCGRG 2 cut(s) 236, 308
BsiSI CCGG 2 cut(s) 176, 735
BslI CCNNNNNNNGG 2 cut(s) 178, 241
BsmAI GTCTC 4 cut(s) 212, 605, 660, 705
BsnI GGCC 2 cut(s) 182, 228
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 236, 308
Bsp1286I GDGCHC 2 cut(s) 590, 645
Bsp143I GATC 3 cut(s) 112, 476, 562
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 182, 228
BspCNI CTCAG 2 cut(s) 673, 731
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 212
BsrI ACTGG 4 cut(s) 581, 597, 636, 652
BssECI CCNNGG 2 cut(s) 250, 726
BssMI GATC 3 cut(s) 112, 476, 562
BssNI GRCGYC 1 cut(s) 673
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 3 cut(s) 251, 266, 346
Bst6I CTCTTC 2 cut(s) 6, 408
BstACI GRCGYC 1 cut(s) 673
BstAPI GCANNNNNTGC 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 526, 539
BstDEI CTNAG 3 cut(s) 605, 660, 718
BstDSI CCRYGG 2 cut(s) 250, 726
BstF5I GGATG 3 cut(s) 372, 454, 731
BstKTI GATC 3 cut(s) 115, 479, 565
BstMAI GTCTC 4 cut(s) 212, 605, 660, 705
BstMBI GATC 3 cut(s) 112, 476, 562
BstMWI GCNNNNNNNGC 4 cut(s) 280, 332, 534, 543
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 2 cut(s) 320, 541
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 327
BstSLI GKGCMC 2 cut(s) 590, 645
BstV1I GCAGC 4 cut(s) 206, 313, 341, 344
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuRI GGCC 2 cut(s) 182, 228
BtgI CCRYGG 2 cut(s) 250, 726
BtgZI GCGATG 1 cut(s) 350
BtsCI GGATG 3 cut(s) 372, 454, 731
BtsIMutI CAGTG 4 cut(s) 574, 590, 629, 645
Cac8I GCNNGC 2 cut(s) 526, 539
Cfr13I GGNCC 2 cut(s) 181, 227
CseI GACGC 1 cut(s) 662
Csp6I GTAC 1 cut(s) 347
CviAII CATG 4 cut(s) 299, 317, 538, 727
CviJI RGCY 8 cut(s) 131, 182, 228, 283, 313, 380, 754, 773
CviKI_1 RGCY 8 cut(s) 131, 182, 228, 283, 313, 380, 754, 773
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 3 cut(s) 605, 660, 718
DpnI GATC 3 cut(s) 114, 478, 564
DpnII GATC 3 cut(s) 112, 476, 562
DraIII CACNNNGTG 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 6, 408
EarI CTCTTC 2 cut(s) 6, 408
Eco130I CCWWGG 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 2 cut(s) 587, 642
Eco88I CYCGRG 2 cut(s) 236, 308
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 4 cut(s) 302, 320, 541, 730
FaiI YATR 7 cut(s) 77, 300, 318, 356, 539, 708, 728
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FatI CATG 4 cut(s) 298, 316, 537, 726
Fnu4HI GCNGC 4 cut(s) 195, 327, 330, 333
FokI GGATG 3 cut(s) 359, 461, 718
Fsp4HI GCNGC 4 cut(s) 195, 327, 330, 333
FspBI CTAG 2 cut(s) 128, 755
GluI GCNGC 4 cut(s) 195, 327, 330, 333
HaeIII GGCC 2 cut(s) 182, 228
HapII CCGG 2 cut(s) 176, 735
HgaI GACGC 1 cut(s) 662
Hin1I GRCGYC 1 cut(s) 673
Hin1II CATG 4 cut(s) 302, 320, 541, 730
HinfI GANTC 3 cut(s) 530, 703, 722
HpaII CCGG 2 cut(s) 176, 735
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 3 cut(s) 244, 588, 643
Hpy188I TCNGA 6 cut(s) 100, 117, 567, 622, 663, 721
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 3 cut(s) 244, 588, 643
HpyAV CCTTC 7 cut(s) 10, 43, 87, 182, 299, 562, 617
HpyCH4III ACNGT 3 cut(s) 251, 266, 346
HpyCH4V TGCA 7 cut(s) 274, 329, 419, 517, 588, 643, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 332, 534, 543
HpyF3I CTNAG 3 cut(s) 605, 660, 718
Hsp92I GRCGYC 1 cut(s) 673
Hsp92II CATG 4 cut(s) 302, 320, 541, 730
Kzo9I GATC 3 cut(s) 112, 476, 562
Lsp1109I GCAGC 4 cut(s) 206, 313, 341, 344
LweI GCATC 5 cut(s) 264, 327, 504, 740, 766
MaeI CTAG 2 cut(s) 128, 755
MalI GATC 3 cut(s) 114, 478, 564
MboI GATC 3 cut(s) 112, 476, 562
MboII GAAGA 8 cut(s) 23, 51, 216, 395, 439, 520, 709, 712
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 590, 645
MluCI AATT 4 cut(s) 149, 435, 581, 636
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 1 cut(s) 83
MspI CCGG 2 cut(s) 176, 735
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 280, 332, 534, 543
NcoI CCATGG 1 cut(s) 726
NdeII GATC 3 cut(s) 112, 476, 562
NlaIII CATG 4 cut(s) 302, 320, 541, 730
NlaIV GGNNCC 1 cut(s) 393
NspI RCATGY 2 cut(s) 320, 541
PaeI GCATGC 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 703, 722
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 4 cut(s) 196, 328, 331, 334
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PscI ACATGT 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 181, 227
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 4 cut(s) 195, 327, 330, 333
Sau3AI GATC 3 cut(s) 112, 476, 562
Sau96I GGNCC 2 cut(s) 181, 227
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 2 cut(s) 590, 645
SfaNI GCATC 5 cut(s) 264, 327, 504, 740, 766
SfcI CTRYAG 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 236, 532
SmoI CTYRAG 2 cut(s) 236, 532
SphI GCATGC 1 cut(s) 541
Sse9I AATT 4 cut(s) 149, 435, 581, 636
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 128, 755
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 3 cut(s) 251, 266, 346
TaqI TCGA 2 cut(s) 154, 237
TasI AATT 4 cut(s) 149, 435, 581, 636
TfiI GAWTC 2 cut(s) 703, 722
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 4 cut(s) 581, 597, 636, 652
TseI GCWGC 4 cut(s) 194, 326, 329, 332
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 2 cut(s) 23, 478
TspRI CASTG 4 cut(s) 581, 597, 636, 652
VneI GTGCAC 2 cut(s) 586, 641
XceI RCATGY 2 cut(s) 320, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 2 cut(s) 128, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.