FvH4_2g13530

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000172
Physical Location & Seq
Reverse (-)
11812810 .. 11814317
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13530.t1

Sequence Viewer

Length: 438 bp
ATGCCACATGAACTGCTGACTATGTTTTATAGCTTTAACAAGTTTTTGCACTCGATTTTTTGGAGAATCTCGGCTAACATACCATGTTGGTCATGTCAGATGGCTTTGAGAGGTGTGTGGCAGCTGAAAAAACTGGTTGTGAGCTATTCTGATAGGGGAGGAAGCAGTAGGGGAATCAGGTCATTTATGGAGTCACATCTACCGACCTTTAAGGAAAAGAATCCTCCGCTAGAGGTGGTTATTGAACATATTCGTGGACAGCATCCTCATTTGAAGGGCTTATACAATAATCAAAATGAAAGGGTGGTGTGTGTGAAGAATATGGATCCAGAAGAAGTTCATCAATGTGCAACCAGGCTAAGGAATTCACTGGGAAGGAAAGTGGTGAAACTGAGGACTAGACATGTAACCAAACATCCAAGTGTGCAAGGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

10.09

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 59 - 110 3.9e-14 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 431
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 360
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 245, 274
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 3 cut(s) 33, 124, 144
AluI AGCT 3 cut(s) 33, 124, 144
AlwI GGATC 2 cut(s) 320, 333
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 364
Asp700I GAANNNNTTC 2 cut(s) 249, 336
Asp718I GGTACC 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 397
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 431
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 355
BfaI CTAG 3 cut(s) 230, 399, 436
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 327, 433
BmrFI CCNGG 1 cut(s) 355
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 138, 375
BseBI CCWGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 262, 415
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 138, 375
BseXI GCAGC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 360
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 327, 433
BspPI GGATC 2 cut(s) 320, 333
BspT107I GGYRCC 1 cut(s) 431
BsrI ACTGG 2 cut(s) 138, 375
BssMI GATC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 359, 392
BstF5I GGATG 2 cut(s) 262, 415
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtsCI GGATG 2 cut(s) 262, 415
BtsIMutI CAGTG 1 cut(s) 368
Csp6I GTAC 1 cut(s) 432
CviAII CATG 4 cut(s) 8, 84, 93, 404
CviJI RGCY 7 cut(s) 33, 74, 104, 124, 144, 279, 358
CviKI_1 RGCY 7 cut(s) 33, 74, 104, 124, 144, 279, 358
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 2 cut(s) 359, 392
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 353
FaeI CATG 4 cut(s) 11, 87, 96, 407
FatI CATG 4 cut(s) 7, 83, 92, 403
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 2 cut(s) 249, 402
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 3 cut(s) 230, 399, 436
GluI GCNGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 11, 87, 96, 407
HinfI GANTC 4 cut(s) 66, 174, 191, 220
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 268, 369
HpyCH4V TGCA 3 cut(s) 49, 350, 427
HpyF3I CTNAG 2 cut(s) 359, 392
Hsp92II CATG 4 cut(s) 11, 87, 96, 407
KpnI GGTACC 1 cut(s) 435
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 119, 163, 340, 342, 356, 367
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 271
MaeI CTAG 3 cut(s) 230, 399, 436
MaeIII GTNAC 2 cut(s) 192, 406
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 2 cut(s) 328, 344
MflI RGATCY 1 cut(s) 325
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 6 cut(s) 104, 152, 226, 234, 276, 387
MroXI GAANNNNTTC 2 cut(s) 249, 336
MseI TTAA 2 cut(s) 36, 210
MslI CAYNNNNRTG 3 cut(s) 252, 345, 420
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 355
MvaI CCWGG 1 cut(s) 355
NdeII GATC 1 cut(s) 325
NlaIII CATG 4 cut(s) 11, 87, 96, 407
NlaIV GGNNCC 2 cut(s) 327, 433
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 1 cut(s) 407
PciI ACATGT 1 cut(s) 403
PdmI GAANNNNTTC 2 cut(s) 249, 336
PfeI GAWTC 3 cut(s) 66, 174, 220
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 327, 433
PsuI RGATCY 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 3 cut(s) 252, 345, 420
SaqAI TTAA 2 cut(s) 36, 210
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 325
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 355
SetI ASST 9 cut(s) 35, 115, 126, 146, 182, 209, 237, 433, 437
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 3 cut(s) 252, 345, 420
Sse9I AATT 1 cut(s) 364
SsiI CCGC 1 cut(s) 227
SspMI CTAG 3 cut(s) 230, 399, 436
StyD4I CCNGG 1 cut(s) 353
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 364
TfiI GAWTC 3 cut(s) 66, 174, 220
Tru1I TTAA 2 cut(s) 36, 210
Tru9I TTAA 2 cut(s) 36, 210
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 3 cut(s) 24, 312, 329
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 407
XmnI GAANNNNTTC 2 cut(s) 249, 336
XspI CTAG 3 cut(s) 230, 399, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.