RLG00000029527

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000172
Physical Location & Seq
Reverse (-)
39890517 .. 39894282
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029527

Sequence Viewer

Length: 783 bp
ATGCTTGCCATGCTTGGTATTGTCGACAACTTCTCATCAATTAATCATATATATGATGCCATTATCACATGGGGAAGAGTTTTGACTATTGAGGTTGATGGAATGCCAACACATTTCATACTTACACTCTTCATCAAACTCTGGACCTCGAGGAAAATCTCCCTGAATCCGCTCTGGCATCGAAAGCCTTCCGCCTTCATCGACCGCGACCCCTCCCTCAAGTCCCTCATCTCCTGCCTCGACCTCGCCGCCAACCCCAACTCCCGATCCCTGCCGAACTCCGCTTCTCCTATGACCCTCCACCGCCGCCGCCACCAACCCAACCCATCCTCTTCAATTTCTCAGCATCCAACCACCGAGCTCGAAGAAGAAGCAGACCCAGAAGAAGATTTAAAAAAAAAATTGGTGATGAGATTTAACATCAGGGCCACTCTCCACAGAATTTCGCCGTCTTCATCCTGCTCTCTTCTAATCGCCAACTATGGCCTTGAGAGGGGAATCAGGTCATTCATGGAGTCTTACCTACCTGCAATTAAGGAGAAGAATCCTCAGCTAGAGGTAGTTACTGAACACATTCGTGGTCAGCATCCTCATTTGAAGGGCTTATACAACAACCAAAATGAAAGAGTGGTATGTGTGAAGAATATGGATCCAGAAGAGATTCTTCAATGTGCAACTAGGCTAAGGAATTCACTCGGGAGAAAAGTGGTGAAACTGAGGACTAGACATGTAACCAAACATCCAAGCGTGCAAGGTACCTGGACGACAGACATCAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

261

Amino Acids

29.74

Weight (kDa)

9.63

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 167 - 218 1.4e-13 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 535
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 207
AciI CCGC 8 cut(s) 170, 192, 205, 249, 282, 304, 307, 310
AclWI GGATC 3 cut(s) 261, 644, 657
AcsI RAATTY 3 cut(s) 441, 688, 776
AfaI GTAC 1 cut(s) 757
AfiI CCNNNNNNNGG 1 cut(s) 493
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 336, 598, 668
AjnI CCWGG 1 cut(s) 758
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 2 cut(s) 361, 553
AluI AGCT 2 cut(s) 361, 553
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 3 cut(s) 261, 644, 657
Ama87I CYCGRG 2 cut(s) 148, 695
AoxI GGCC 2 cut(s) 426, 484
ApoI RAATTY 3 cut(s) 441, 688, 776
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 3 cut(s) 187, 573, 660
Asp718I GGTACC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 144, 426
AsuHPI GGTGA 2 cut(s) 418, 721
AvaI CYCGRG 2 cut(s) 148, 695
AvaII GGWCC 1 cut(s) 144
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 549
BccI CCATC 2 cut(s) 92, 334
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 760
BfaI CTAG 3 cut(s) 554, 678, 723
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 3 cut(s) 249, 307, 310
BlsI GCNGC 3 cut(s) 250, 308, 311
Bme1390I CCNGG 1 cut(s) 760
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 2 cut(s) 148, 695
BmgT120I GGNCC 2 cut(s) 144, 426
BmiI GGNNCC 2 cut(s) 651, 757
BmrFI CCNGG 1 cut(s) 760
BmsI GCATC 4 cut(s) 46, 187, 355, 595
BpiI GAAGAC 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 549, 683
BpuEI CTTGAG 2 cut(s) 203, 509
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 760
BseGI GGATG 5 cut(s) 326, 346, 455, 586, 739
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 3 cut(s) 356, 563, 707
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 428, 486
BshNI GGYRCC 1 cut(s) 755
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 2 cut(s) 148, 695
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 2 cut(s) 428, 486
BsoBI CYCGRG 2 cut(s) 148, 695
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 266, 649
BspACI CCGC 8 cut(s) 170, 192, 205, 249, 282, 304, 307, 310
BspANI GGCC 2 cut(s) 428, 486
BspCNI CTCAG 3 cut(s) 355, 562, 708
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 651, 757
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 3 cut(s) 261, 644, 657
BspT107I GGYRCC 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 172
BssMI GATC 2 cut(s) 266, 649
Bst2UI CCWGG 1 cut(s) 760
Bst6I CTCTTC 5 cut(s) 70, 134, 337, 471, 651
BstC8I GCNNGC 2 cut(s) 6, 749
BstDEI CTNAG 4 cut(s) 342, 549, 683, 716
BstF5I GGATG 5 cut(s) 326, 346, 455, 586, 739
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 2 cut(s) 269, 652
BstMBI GATC 2 cut(s) 266, 649
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 10, 184
BstNI CCWGG 1 cut(s) 760
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 758
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 2 cut(s) 428, 486
BtsCI GGATG 5 cut(s) 326, 346, 455, 586, 739
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 2 cut(s) 6, 749
Cfr13I GGNCC 2 cut(s) 144, 426
Csp6I GTAC 1 cut(s) 756
CviAII CATG 4 cut(s) 10, 69, 511, 728
CviJI RGCY 7 cut(s) 187, 361, 428, 486, 553, 603, 682
CviKI_1 RGCY 7 cut(s) 187, 361, 428, 486, 553, 603, 682
CviQI GTAC 1 cut(s) 756
DdeI CTNAG 4 cut(s) 342, 549, 683, 716
DpnI GATC 2 cut(s) 268, 651
DpnII GATC 2 cut(s) 266, 649
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 5 cut(s) 70, 134, 337, 471, 651
EarI CTCTTC 5 cut(s) 70, 134, 337, 471, 651
EciI GGCGGA 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 361
Eco88I CYCGRG 2 cut(s) 148, 695
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 758
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 4 cut(s) 13, 72, 514, 731
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 1 cut(s) 208
FatI CATG 4 cut(s) 9, 68, 510, 727
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 249, 307, 310
FokI GGATG 5 cut(s) 313, 333, 442, 573, 726
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 249, 307, 310
FspBI CTAG 3 cut(s) 554, 678, 723
GluI GCNGC 3 cut(s) 249, 307, 310
HaeIII GGCC 2 cut(s) 428, 486
Hin1II CATG 4 cut(s) 13, 72, 514, 731
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 5 cut(s) 166, 498, 515, 544, 661
HphI GGTGA 2 cut(s) 418, 721
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 142, 264, 653, 697
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 198, 205, 592
HpyCH4V TGCA 3 cut(s) 530, 674, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 184
HpyF3I CTNAG 4 cut(s) 342, 549, 683, 716
Hsp92II CATG 4 cut(s) 13, 72, 514, 731
KpnI GGTACC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 266, 649
LweI GCATC 4 cut(s) 46, 187, 355, 595
MaeI CTAG 3 cut(s) 554, 678, 723
MaeIII GTNAC 2 cut(s) 562, 730
MalI GATC 2 cut(s) 268, 651
MbiI CCGCTC 1 cut(s) 172
MboI GATC 2 cut(s) 266, 649
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 7 cut(s) 39, 336, 401, 441, 531, 688, 776
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 374
MroXI GAANNNNTTC 3 cut(s) 187, 573, 660
MseI TTAA 4 cut(s) 42, 392, 417, 534
MslI CAYNNNNRTG 2 cut(s) 51, 576
MspR9I CCNGG 1 cut(s) 760
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 1 cut(s) 760
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 10, 184
NdeII GATC 2 cut(s) 266, 649
NlaIII CATG 4 cut(s) 13, 72, 514, 731
NlaIV GGNNCC 2 cut(s) 651, 757
NspI RCATGY 1 cut(s) 731
OliI CACNNNNGTG 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 148
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 3 cut(s) 187, 573, 660
PfeI GAWTC 4 cut(s) 166, 498, 544, 661
PkrI GCNGC 3 cut(s) 250, 308, 311
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PscI ACATGT 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 758
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 2 cut(s) 651, 757
PspPI GGNCC 2 cut(s) 144, 426
PspXI VCTCGAGB 1 cut(s) 148
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
RseI CAYNNNNRTG 2 cut(s) 51, 576
SacI GAGCTC 1 cut(s) 363
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 42, 392, 417, 534
SatI GCNGC 3 cut(s) 249, 307, 310
Sau3AI GATC 2 cut(s) 266, 649
Sau96I GGNCC 2 cut(s) 144, 426
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 4 cut(s) 46, 187, 355, 595
Sfr274I CTCGAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 51, 576
SmlI CTYRAG 3 cut(s) 148, 218, 488
SmoI CTYRAG 3 cut(s) 148, 218, 488
Sse9I AATT 7 cut(s) 39, 336, 401, 441, 531, 688, 776
SsiI CCGC 8 cut(s) 170, 192, 205, 249, 282, 304, 307, 310
SspMI CTAG 3 cut(s) 554, 678, 723
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 758
TaqI TCGA 6 cut(s) 24, 149, 181, 201, 240, 363
TasI AATT 7 cut(s) 39, 336, 401, 441, 531, 688, 776
TauI GCSGC 3 cut(s) 251, 309, 312
TfiI GAWTC 4 cut(s) 166, 498, 544, 661
Tru1I TTAA 4 cut(s) 42, 392, 417, 534
Tru9I TTAA 4 cut(s) 42, 392, 417, 534
TspDTI ATGAA 6 cut(s) 106, 121, 187, 444, 499, 636
VpaK11BI GGWCC 1 cut(s) 144
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 3 cut(s) 441, 688, 776
XceI RCATGY 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 3 cut(s) 187, 573, 660
XspI CTAG 3 cut(s) 554, 678, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.