Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

12020611 .. 12021184

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13791.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGGATGGATAGGAGACTGCGCGTGTCACCGGAGGATGGGTGCAATACAAATCTTGGTTTCTCCATGGCTGTGAGTGGGGAGTTAGGGATCAAGAAGACGGGGAAATCCCCGAAGAAGAGAGGCAAGCCTCGAGGAAGTAAGAACAAGAAGCAACTATATACTGGTGAGTCGTCGAGCTCCATGGCAGACACTGTCATACATGAGCCTCTTTCTACTGAAGAAACCGGTGGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

80

Amino Acids

8.57

Weight (kDa)

9.66

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	132
AccII	CGCG	1 cut(s)	24
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	227
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	21, 179
AvaI	CYCGRG	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	66, 183
BsaWI	WCCGGW	2 cut(s)	31, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	66, 183
BseGI	GGATG	2 cut(s)	12, 43
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	32, 228
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	2 cut(s)	66, 183
BspFNI	CGCG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	66, 183
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	66, 183
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	128
BstDSI	CCRYGG	2 cut(s)	66, 183
BstF5I	GGATG	2 cut(s)	12, 43
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	104
BtgI	CCRYGG	2 cut(s)	66, 183
BtsCI	GGATG	2 cut(s)	12, 43
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	227
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	3 cut(s)	67, 184, 203
CviJI	RGCY	4 cut(s)	71, 130, 180, 208
CviKI_1	RGCY	4 cut(s)	71, 130, 180, 208
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	66, 183
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	66, 183
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	66, 183
FaeI	CATG	3 cut(s)	70, 187, 206
FaiI	YATR	6 cut(s)	68, 160, 162, 185, 200, 204
FatI	CATG	3 cut(s)	66, 183, 202
FokI	GGATG	2 cut(s)	19, 50
FriOI	GRGCYC	1 cut(s)	182
GlaI	GCGC	1 cut(s)	23
HapII	CCGG	2 cut(s)	32, 228
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	70, 187, 206
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	32, 228
HphI	GGTGA	2 cut(s)	21, 179
Hpy188III	TCNNGA	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	70, 187, 206
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	45, 150
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	4 cut(s)	109, 127, 130, 233
MhlI	GDGCHC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	28, 116, 128, 141, 219
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	2 cut(s)	32, 228
MvnI	CGCG	1 cut(s)	24
NcoI	CCATGG	2 cut(s)	66, 183
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	3 cut(s)	70, 187, 206
NmuCI	GTSAC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	227
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	1 cut(s)	182
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	66, 183
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	133, 176
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.