Rmu_sc0012628.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012628.1
OG0000172
Physical Location & Seq
Reverse (-)
2 .. 462
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012628.1_g000001.1.cds

Sequence Viewer

Length: 461 bp
atgattcttctgaatgactacggtgggttttcggagatctctgcagtgaggttggattttgtttggatttgggttacgcttgatggcatacctccaggtattttgacggaacctaccgtccggttagttggtgggacaattggcaaggtgctggaggtggatcgtccggcgctgcgtaggggcgatgctcgggtcaggcttgttctctctatccatgatccggtgcgtctcgaccgcagggttagggtttctctctctgacgtcctaaccctaagattcaggtatgaaaggctccttgggcgctgccactcttgtgctatgttgaatcatggtggccaacgatgccctagggtggacgagttggaagctgatgttgctggggaggagcagggatcgcagacggctggtggactgatcattccagcccttgtctttagggcaaacattcagccctctatctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

7.79

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AciI CCGC 1 cut(s) 235
AclWI GGATC 3 cut(s) 168, 212, 400
AcoI YGGCCR 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 220, 352
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 312
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 3 cut(s) 168, 212, 400
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 172, 303
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 2 cut(s) 172, 303
AvaI CYCGRG 1 cut(s) 189
AvrII CCTAGG 1 cut(s) 347
BalI TGGCCA 1 cut(s) 336
BbvI GCAGC 2 cut(s) 159, 290
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 2 cut(s) 173, 304
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 173, 304
BlnI CCTAGG 1 cut(s) 347
BlsI GCNGC 2 cut(s) 174, 305
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 111, 293
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 175, 332
BpmI CTGGAG 2 cut(s) 78, 173
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 295, 347
BsaWI WCCGGW 2 cut(s) 120, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 352
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 295, 347
BseLI CCNNNNNNNGG 2 cut(s) 220, 352
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 159, 290
BseYI CCCAGC 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 3 cut(s) 121, 167, 221
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 220, 352
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 5 cut(s) 36, 160, 217, 392, 414
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 111, 293
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 3 cut(s) 168, 212, 400
BssECI CCNNGG 2 cut(s) 295, 347
BssMI GATC 5 cut(s) 36, 160, 217, 392, 414
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 295, 347
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 23, 118
BstACI GRCGYC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 272
BstH2I RGCGCY 2 cut(s) 173, 304
BstHHI GCGC 2 cut(s) 172, 303
BstKTI GATC 5 cut(s) 39, 163, 220, 395, 417
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 5 cut(s) 36, 160, 217, 392, 414
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 298, 342, 374, 394
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 159, 290
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
CfoI GCGC 2 cut(s) 172, 303
CseI GACGC 1 cut(s) 215
CviAII CATG 2 cut(s) 215, 329
CviJI RGCY 7 cut(s) 199, 292, 336, 368, 404, 425, 451
CviKI_1 RGCY 7 cut(s) 199, 292, 336, 368, 404, 425, 451
DdeI CTNAG 1 cut(s) 272
DpnI GATC 5 cut(s) 38, 162, 219, 394, 416
DpnII GATC 5 cut(s) 36, 160, 217, 392, 414
EaeI YGGCCR 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 295, 347
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 295, 347
ErhI CCWWGG 2 cut(s) 295, 347
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 2 cut(s) 218, 332
FaiI YATR 5 cut(s) 89, 216, 285, 320, 330
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 214, 328
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 173, 304
Fsp4HI GCNGC 2 cut(s) 173, 304
FspBI CTAG 1 cut(s) 348
GlaI GCGC 2 cut(s) 171, 302
GluI GCNGC 2 cut(s) 173, 304
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 2 cut(s) 78, 173
HaeII RGCGCY 2 cut(s) 173, 304
HaeIII GGCC 1 cut(s) 336
HapII CCGG 3 cut(s) 121, 167, 221
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 172, 303
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 2 cut(s) 218, 332
Hin6I GCGC 2 cut(s) 170, 301
HinP1I GCGC 2 cut(s) 170, 301
HinfI GANTC 3 cut(s) 4, 276, 325
HpaII CCGG 3 cut(s) 121, 167, 221
Hpy166II GTNNAC 2 cut(s) 355, 410
Hpy188I TCNGA 3 cut(s) 12, 34, 259
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 355, 410
HpyCH4III ACNGT 2 cut(s) 23, 118
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 298, 342, 374, 394
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 2 cut(s) 218, 332
HspAI GCGC 2 cut(s) 170, 301
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 5 cut(s) 36, 160, 217, 392, 414
LmnI GCTCC 2 cut(s) 297, 385
Lsp1109I GCAGC 2 cut(s) 159, 290
LweI GCATC 2 cut(s) 175, 332
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 73
MalI GATC 5 cut(s) 38, 162, 219, 394, 416
MboI GATC 5 cut(s) 36, 160, 217, 392, 414
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 33, 342
MnlI CCTC 4 cut(s) 42, 102, 148, 376
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 3 cut(s) 121, 167, 221
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 298, 342, 374, 394
NdeII GATC 5 cut(s) 36, 160, 217, 392, 414
NlaIII CATG 2 cut(s) 218, 332
NlaIV GGNNCC 2 cut(s) 111, 293
OliI CACNNNNGTG 1 cut(s) 312
PfeI GAWTC 3 cut(s) 4, 276, 325
PkrI GCNGC 2 cut(s) 174, 305
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 111, 293
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 2 cut(s) 173, 304
Sau3AI GATC 5 cut(s) 36, 160, 217, 392, 414
ScrFI CCNGG 1 cut(s) 96
SetI ASST 9 cut(s) 53, 94, 100, 115, 150, 159, 264, 284, 370
SfaNI GCATC 2 cut(s) 175, 332
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 2 cut(s) 295, 347
TaaI ACNGT 2 cut(s) 23, 118
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 138
TfiI GAWTC 3 cut(s) 4, 276, 325
TscAI CASTG 1 cut(s) 51
TseI GCWGC 2 cut(s) 172, 303
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 347
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.