Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005420.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

26930 .. 27605

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005420.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ctggtggatttggggaatctcagggttctggggaaggagtttttggctcgcaacttttatttggtggggaggcttaacacatgtagggcggtggtgttggattcattctggagtgcggtgagatcgatgtggagactgacggggacagtagaggtccaaccacggggtgatcagtttttgtttatgttcactcatgaacaagatgttgcacgggtaaagaagggaggtccatggggttttcaacatgccatgattctcttgaatgattataatggcttctcggagatctcggtggtgagtttggactttgtttggatctgggttgtgctgcagggtatcctatcgagcatattgatggaacctactgtccggttggtgggtgggatgattggagaggttttggaagtggatggtatagcgcttcgccatggagaagctagagtaggctggttctatccatcaatgattcggtatgagaggcttctggggcgctacaagttgtgcgctctgctgaatcatggaaggcagcaatgccctagggaggatgtgtcagagacaaacaccgtagtggaggcggggtctcaacaggcaccggggccgatcattccagccttagttttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

207

Amino Acids

23.35

Weight (kDa)

7.09

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	3 cut(s)	89, 116, 575
AclWI	GGATC	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	163, 376, 541
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	242, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AleI	CACNNNNGTG	1 cut(s)	566
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw26I	GTCTC	3 cut(s)	127, 548, 585
AlwI	GGATC	1 cut(s)	323
Aor51HI	AGCGCT	1 cut(s)	420
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	328, 526
AspA2I	CCTAGG	1 cut(s)	536
AspLEI	GCGC	3 cut(s)	421, 492, 506
AspS9I	GGNCC	3 cut(s)	154, 227, 596
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	3 cut(s)	130, 179, 307
AvaII	GGWCC	2 cut(s)	154, 227
AvrII	CCTAGG	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	589
BbvI	GCAGC	2 cut(s)	315, 538
BccI	CCATC	3 cut(s)	349, 404, 466
BciVI	GTATCC	1 cut(s)	347
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	3 cut(s)	127, 548, 585
BfaI	CTAG	3 cut(s)	438, 537, 622
BfmI	CTRYAG	1 cut(s)	329
BfoI	RGCGCY	2 cut(s)	422, 493
BfuI	GTATCC	1 cut(s)	347
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	2 cut(s)	329, 527
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	2 cut(s)	330, 528
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	2 cut(s)	154, 227
BmgT120I	GGNCC	3 cut(s)	154, 227, 596
BmiI	GGNNCC	3 cut(s)	360, 591, 597
BmrFI	CCNGG	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	161, 230, 427, 536, 593
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 563, 563, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 376, 541
Bse3DI	GCAATG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	5 cut(s)	161, 230, 427, 536, 593
BseGI	GGATG	3 cut(s)	390, 415, 550
BseLI	CCNNNNNNNGG	3 cut(s)	163, 376, 541
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	315, 538
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	1 cut(s)	589
BshVI	ATCGAT	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	370, 593
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	163, 376, 541
BsmAI	GTCTC	3 cut(s)	127, 548, 585
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	598
Bso31I	GGTCTC	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	122, 169, 285, 315, 600
Bsp19I	CCATGG	2 cut(s)	230, 427
BspACI	CCGC	3 cut(s)	89, 116, 575
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	360, 591, 597
BspMAI	CTGCAG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	536
BssECI	CCNNGG	5 cut(s)	161, 230, 427, 536, 593
BssMI	GATC	5 cut(s)	122, 169, 285, 315, 600
BssT1I	CCWWGG	3 cut(s)	230, 427, 536
Bst4CI	ACNGT	3 cut(s)	148, 367, 565
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	20, 613
BstDSI	CCRYGG	3 cut(s)	161, 230, 427
BstF5I	GGATG	3 cut(s)	390, 415, 550
BstH2I	RGCGCY	2 cut(s)	422, 493
BstHHI	GCGC	3 cut(s)	421, 492, 506
BstKTI	GATC	5 cut(s)	125, 172, 288, 318, 603
BstMAI	GTCTC	3 cut(s)	127, 548, 585
BstMBI	GATC	5 cut(s)	122, 169, 285, 315, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNSI	RCATGY	2 cut(s)	84, 248
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	315, 538
BstX2I	RGATCY	2 cut(s)	285, 315
BstYI	RGATCY	2 cut(s)	285, 315
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	598
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	3 cut(s)	161, 230, 427
BtsCI	GGATG	3 cut(s)	390, 415, 550
Cac8I	GCNNGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	3 cut(s)	421, 492, 506
Cfr13I	GGNCC	3 cut(s)	154, 227, 596
ClaI	ATCGAT	1 cut(s)	125
CviAII	CATG	7 cut(s)	81, 194, 231, 245, 250, 428, 518
CviJI	RGCY	8 cut(s)	47, 73, 276, 437, 447, 481, 598, 611
CviKI_1	RGCY	8 cut(s)	47, 73, 276, 437, 447, 481, 598, 611
DdeI	CTNAG	2 cut(s)	20, 613
DpnI	GATC	5 cut(s)	124, 171, 287, 317, 602
DpnII	GATC	5 cut(s)	122, 169, 285, 315, 600
DraIII	CACNNNGTG	1 cut(s)	167
Eco130I	CCWWGG	3 cut(s)	230, 427, 536
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	154, 227
Eco47III	AGCGCT	1 cut(s)	420
EcoT14I	CCWWGG	3 cut(s)	230, 427, 536
ErhI	CCWWGG	3 cut(s)	230, 427, 536
FaeI	CATG	7 cut(s)	84, 197, 234, 248, 253, 431, 521
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	7 cut(s)	80, 193, 230, 244, 249, 427, 517
FauI	CCCGC	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	329, 527
FokI	GGATG	3 cut(s)	397, 422, 557
Fsp4HI	GCNGC	2 cut(s)	329, 527
FspBI	CTAG	3 cut(s)	438, 537, 622
GlaI	GCGC	3 cut(s)	420, 491, 505
GluI	GCNGC	2 cut(s)	329, 527
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	2 cut(s)	422, 493
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	2 cut(s)	370, 593
HhaI	GCGC	3 cut(s)	421, 492, 506
Hin1II	CATG	7 cut(s)	84, 197, 234, 248, 253, 431, 521
Hin6I	GCGC	3 cut(s)	419, 490, 504
HinP1I	GCGC	3 cut(s)	419, 490, 504
HinfI	GANTC	5 cut(s)	16, 101, 253, 466, 514
HpaII	CCGG	2 cut(s)	370, 593
HphI	GGTGA	3 cut(s)	130, 179, 307
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	2 cut(s)	283, 553
Hpy188III	TCNNGA	3 cut(s)	109, 194, 259
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	28, 214, 516
HpyCH4III	ACNGT	3 cut(s)	148, 367, 565
HpyCH4V	TGCA	2 cut(s)	209, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	20, 613
Hsp92II	CATG	7 cut(s)	84, 197, 234, 248, 253, 431, 521
HspAI	GCGC	3 cut(s)	419, 490, 504
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	122, 169, 285, 315, 600
Lsp1109I	GCAGC	2 cut(s)	315, 538
MaeI	CTAG	3 cut(s)	438, 537, 622
MalI	GATC	5 cut(s)	124, 171, 287, 317, 602
MboI	GATC	5 cut(s)	122, 169, 285, 315, 600
MflI	RGATCY	2 cut(s)	285, 315
MmeI	TCCRAC	2 cut(s)	78, 181
MnlI	CCTC	7 cut(s)	63, 145, 218, 388, 471, 535, 565
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	353, 566
MspI	CCGG	2 cut(s)	370, 593
MspR9I	CCNGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	487
NciI	CCSGG	1 cut(s)	594
NcoI	CCATGG	2 cut(s)	230, 427
NdeII	GATC	5 cut(s)	122, 169, 285, 315, 600
NlaIII	CATG	7 cut(s)	84, 197, 234, 248, 253, 431, 521
NlaIV	GGNNCC	3 cut(s)	360, 591, 597
NspI	RCATGY	2 cut(s)	84, 248
OliI	CACNNNNGTG	1 cut(s)	566
PagI	TCATGA	1 cut(s)	193
PciI	ACATGT	1 cut(s)	80
PfeI	GAWTC	5 cut(s)	16, 101, 253, 466, 514
PkrI	GCNGC	2 cut(s)	330, 528
PscI	ACATGT	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	360, 591, 597
PspPI	GGNCC	3 cut(s)	154, 227, 596
PstI	CTGCAG	1 cut(s)	333
PsuI	RGATCY	2 cut(s)	285, 315
RseI	CAYNNNNRTG	2 cut(s)	353, 566
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	329, 527
Sau3AI	GATC	5 cut(s)	122, 169, 285, 315, 600
Sau96I	GGNCC	3 cut(s)	154, 227, 596
ScrFI	CCNGG	1 cut(s)	594
SetI	ASST	5 cut(s)	156, 229, 364, 399, 439
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	154, 227
SmiMI	CAYNNNNRTG	2 cut(s)	353, 566
SsiI	CCGC	3 cut(s)	89, 116, 575
SspMI	CTAG	3 cut(s)	438, 537, 622
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	3 cut(s)	230, 427, 536
TaaI	ACNGT	3 cut(s)	148, 367, 565
TaqI	TCGA	2 cut(s)	125, 344
TfiI	GAWTC	5 cut(s)	16, 101, 253, 466, 514
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	328, 526
TspDTI	ATGAA	2 cut(s)	93, 210
VpaK11BI	GGWCC	2 cut(s)	154, 227
XceI	RCATGY	2 cut(s)	84, 248
XmaJI	CCTAGG	1 cut(s)	536
XspI	CTAG	3 cut(s)	438, 537, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.