Rmu_sc0021333.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021333.1
OG0000172
Physical Location & Seq
Reverse (-)
14866 .. 15748
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021333.1_g000003.1.cds

Sequence Viewer

Length: 495 bp
ctgtaccgccttgcagcgcagcacacggtggatctcgtcgctagagaacaccatagggatgaccggacggaagaggcgaaccagctgaccaagtttcacggccagagaccgccgcagttcaccggaaaagccgggtcgggtcagtctgaaaatttcgtttctgaaggtcatcacacgcttgatggcatacctccgggtattttgactgaacctaccatccggttggttagtgggacaattggcgaggtgctggaggtggatcgtccgacgctatgtaggggcaatgctcgggtcaggcttgttctctctatccatgatccggtgcgtctcgaccctagggttagagtttctccctctgacgtcctaacccttagattcaagtatgaaaggctctttgggcgttgccacgcctatgctatgttgaatcatggtggccagcgatgccctagggtggatgagttggaagctgatgctgggatggaacagggatcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

6.82

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
AciI CCGC 3 cut(s) 7, 110, 113
AclWI GGATC 3 cut(s) 39, 267, 311
AcoI YGGCCR 2 cut(s) 100, 433
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 28
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 319, 451
AgsI TTSAA 2 cut(s) 379, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 85, 467
AluI AGCT 2 cut(s) 85, 467
Alw26I GTCTC 2 cut(s) 100, 332
AlwI GGATC 3 cut(s) 39, 267, 311
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 2 cut(s) 100, 433
ApeKI GCWGC 2 cut(s) 14, 19
ApoI RAATTY 1 cut(s) 151
AspA2I CCTAGG 2 cut(s) 335, 446
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 2 cut(s) 133, 195
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 288
AvrII CCTAGG 2 cut(s) 335, 446
BalI TGGCCA 1 cut(s) 435
BbvI GCAGC 2 cut(s) 26, 31
BccI CCATC 3 cut(s) 176, 224, 472
BceAI ACGGC 1 cut(s) 115
BcnI CCSGG 2 cut(s) 133, 195
BcoDI GTCTC 2 cut(s) 100, 332
BfaI CTAG 3 cut(s) 42, 336, 447
BisI GCNGC 3 cut(s) 15, 20, 113
BlnI CCTAGG 2 cut(s) 335, 446
BlsI GCNGC 3 cut(s) 16, 21, 114
Bme1390I CCNGG 2 cut(s) 133, 195
BmeT110I CYCGRG 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 133, 195
BmsI GCATC 2 cut(s) 431, 460
BpmI CTGGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 133, 195
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 335, 446
BsaWI WCCGGW 4 cut(s) 63, 122, 219, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 451
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 335, 446
BseGI GGATG 4 cut(s) 64, 216, 460, 483
BseLI CCNNNNNNNGG 2 cut(s) 319, 451
BseMI GCAATG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 26, 31
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 2 cut(s) 102, 435
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 6 cut(s) 64, 123, 132, 194, 220, 320
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 319, 451
BsmAI GTCTC 2 cut(s) 100, 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 102, 435
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 288
Bsp143I GATC 4 cut(s) 31, 259, 316, 488
BspACI CCGC 3 cut(s) 7, 110, 113
BspANI GGCC 2 cut(s) 102, 435
BspPI GGATC 3 cut(s) 39, 267, 311
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 335, 446
BssMI GATC 4 cut(s) 31, 259, 316, 488
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 335, 446
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 4 cut(s) 64, 216, 460, 483
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 34, 262, 319, 491
BstMAI GTCTC 2 cut(s) 100, 332
BstMBI GATC 4 cut(s) 31, 259, 316, 488
BstMWI GCNNNNNNNGC 2 cut(s) 397, 441
BstSCI CCNGG 2 cut(s) 131, 193
BstV1I GCAGC 2 cut(s) 26, 31
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 2 cut(s) 102, 435
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 4 cut(s) 64, 216, 460, 483
Cac8I GCNNGC 1 cut(s) 437
CfoI GCGC 1 cut(s) 19
CseI GACGC 2 cut(s) 277, 314
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 314, 428
CviJI RGCY 7 cut(s) 85, 102, 131, 298, 391, 435, 467
CviKI_1 RGCY 7 cut(s) 85, 102, 131, 298, 391, 435, 467
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 33, 261, 318, 490
DpnII GATC 4 cut(s) 31, 259, 316, 488
DraIII CACNNNGTG 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 100, 433
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 335, 446
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 288
EcoT14I CCWWGG 2 cut(s) 335, 446
ErhI CCWWGG 2 cut(s) 335, 446
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 2 cut(s) 317, 431
FaiI YATR 8 cut(s) 54, 188, 274, 315, 384, 414, 419, 429
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 313, 427
Fnu4HI GCNGC 3 cut(s) 15, 20, 113
FokI GGATG 4 cut(s) 71, 203, 467, 490
Fsp4HI GCNGC 3 cut(s) 15, 20, 113
FspBI CTAG 3 cut(s) 42, 336, 447
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 15, 20, 113
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 102, 435
HapII CCGG 6 cut(s) 64, 123, 132, 194, 220, 320
HgaI GACGC 2 cut(s) 277, 314
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 317, 431
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 375, 424
HpaII CCGG 6 cut(s) 64, 123, 132, 194, 220, 320
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 148, 163, 267, 358
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 41, 271
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 441
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 317, 431
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 4 cut(s) 31, 259, 316, 488
Lsp1109I GCAGC 2 cut(s) 26, 31
LweI GCATC 2 cut(s) 431, 460
MaeI CTAG 3 cut(s) 42, 336, 447
MaeII ACGT 1 cut(s) 360
MalI GATC 4 cut(s) 33, 261, 318, 490
MboI GATC 4 cut(s) 31, 259, 316, 488
MboII GAAGA 1 cut(s) 83
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 2 cut(s) 151, 237
MluNI TGGCCA 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 290, 441
MnlI CCTC 5 cut(s) 67, 201, 238, 247, 364
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MslI CAYNNNNRTG 2 cut(s) 57, 411
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 6 cut(s) 64, 123, 132, 194, 220, 320
MspR9I CCNGG 2 cut(s) 133, 195
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 397, 441
NciI CCSGG 2 cut(s) 133, 195
NdeII GATC 4 cut(s) 31, 259, 316, 488
NlaIII CATG 2 cut(s) 317, 431
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 2 cut(s) 375, 424
PkrI GCNGC 3 cut(s) 16, 21, 114
PspFI CCCAGC 1 cut(s) 473
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 57, 411
SatI GCNGC 3 cut(s) 15, 20, 113
Sau3AI GATC 4 cut(s) 31, 259, 316, 488
ScrFI CCNGG 2 cut(s) 133, 195
SetI ASST 8 cut(s) 87, 169, 193, 214, 249, 258, 363, 469
SfaNI GCATC 2 cut(s) 431, 460
SmiMI CAYNNNNRTG 2 cut(s) 57, 411
Sse9I AATT 2 cut(s) 151, 237
SsiI CCGC 3 cut(s) 7, 110, 113
SspMI CTAG 3 cut(s) 42, 336, 447
StyD4I CCNGG 2 cut(s) 131, 193
StyI CCWWGG 2 cut(s) 335, 446
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 151, 237
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 2 cut(s) 375, 424
TseI GCWGC 2 cut(s) 14, 19
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 1 cut(s) 151
XmaJI CCTAGG 2 cut(s) 335, 446
XspI CTAG 3 cut(s) 42, 336, 447
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.