FvH4_6g14961

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
9264857 .. 9265976
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14961.t1

Sequence Viewer

Length: 783 bp
ATGGCATCGACTTCCATGGCAATGAAGACTATAGCAGCAGCCTCTGCTGCCTTCGTCACTGCAAGCCTCATCTTGAAGCTTTCTCTTTGCAATGAAGAGGAACCAGAGCGTAGTACGCTCCATGTGGAGGCTTTCAACTCCGATGAAAGTTCAAATGAGGGGGGATCGAGGGCTATAATTCTCCTCAATGATTATGACGACTTCTCTGACATCATGGCCGTGTCTCTGGATTTCGTTTGGATATGGTTTCCAGCGTGCACTTGTGCTCGTCTACATCACTTTGCCTCTGCACTAGCCGGTGAGACTGGACGTCACATTAGGGTTTCCCTTGTGGTCGTAATCCAAGTGTTCTACAAGTATGAAAGGCTTTTTGGGACGTTGTGCTCCTGTCCATTGATCAATCATGGGGATGAGGCCTACCCTTGTGAGATTGAGAAAAACCCTAGGCTAGCTGTGGCACCCATCACAACAGCGGCGTCTCCACACATGAAGTCCCGACTTTTCCCTCTCCGTCTAAAATTGATGGAGTACATGTGGCGTAAAAGGGAAGAGGATGAGTCGTCTGATGGGAAGCGGGCACGACATGCATTAGCCTTGGTGCCTCTACCTCTGAATCCCAAGAAGGTGGGTTTTACTTCCTCATATGGTGGTGCCTTATGGATCAAGAAGACTGGTAAGTCACCGAAGAAGCTAGGACGTCCAAGAGGGAGTCGTAAGGGGCTAGGATTTCTAAGTTTGGATCTTTGGCGCAACATCTGGGCACATCTTTACAAGTTGCTTTAG

Protein Analysis

261

Amino Acids

29.07

Weight (kDa)

9.2

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 676
AatII GACGTC 2 cut(s) 313, 700
AccB1I GGYRCC 3 cut(s) 457, 598, 650
AccI GTMKAC 1 cut(s) 271
AciI CCGC 2 cut(s) 473, 574
AclWI GGATC 3 cut(s) 172, 668, 747
AcoI YGGCCR 1 cut(s) 216
AcyI GRCGYC 3 cut(s) 310, 476, 697
AfaI GTAC 2 cut(s) 115, 530
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 3 cut(s) 76, 136, 153
AhdI GACNNNNNGTC 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 3 cut(s) 79, 452, 691
AluI AGCT 3 cut(s) 79, 452, 691
Alw21I GWGCWC 3 cut(s) 260, 268, 386
Alw26I GTCTC 3 cut(s) 228, 296, 483
Alw44I GTGCAC 1 cut(s) 256
AlwI GGATC 3 cut(s) 172, 668, 747
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 2 cut(s) 216, 414
ApaLI GTGCAC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 35, 38, 47
AspA2I CCTAGG 1 cut(s) 443
AspLEI GCGC 1 cut(s) 750
AsuHPI GGTGA 2 cut(s) 311, 672
AsuNHI GCTAGC 1 cut(s) 448
AvrII CCTAGG 1 cut(s) 443
BaeGI GKGCMC 3 cut(s) 260, 580, 763
BanI GGYRCC 3 cut(s) 457, 598, 650
BbsI GAAGAC 2 cut(s) 32, 674
Bbv12I GWGCWC 3 cut(s) 260, 268, 386
BbvI GCAGC 3 cut(s) 34, 47, 50
BccI CCATC 3 cut(s) 470, 517, 560
BceAI ACGGC 1 cut(s) 203
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 3 cut(s) 228, 296, 483
BfaI CTAG 5 cut(s) 293, 444, 449, 692, 722
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 4 cut(s) 36, 39, 48, 474
BlnI CCTAGG 1 cut(s) 443
BlsI GCNGC 4 cut(s) 37, 40, 49, 475
BmeRI GACNNNNNGTC 1 cut(s) 309
BmiI GGNNCC 4 cut(s) 102, 459, 600, 652
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 452
BpiI GAAGAC 2 cut(s) 32, 674
BsaHI GRCGYC 3 cut(s) 310, 476, 697
BsaJI CCNNGG 3 cut(s) 15, 443, 594
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 310, 676
Bse3DI GCAATG 2 cut(s) 27, 97
BseDI CCNNGG 3 cut(s) 15, 443, 594
BseGI GGATG 2 cut(s) 415, 559
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 2 cut(s) 27, 97
BseNI ACTGG 2 cut(s) 310, 676
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 3 cut(s) 260, 580, 763
BseXI GCAGC 3 cut(s) 34, 47, 50
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 218, 416
BshNI GGYRCC 3 cut(s) 457, 598, 650
BsiHKAI GWGCWC 3 cut(s) 260, 268, 386
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 388, 478
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 3 cut(s) 228, 296, 483
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 2 cut(s) 388, 478
BsnI GGCC 2 cut(s) 218, 416
Bsp1286I GDGCHC 5 cut(s) 260, 268, 386, 580, 763
Bsp143I GATC 4 cut(s) 164, 396, 660, 739
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 2 cut(s) 473, 574
BspANI GGCC 2 cut(s) 218, 416
BspLI GGNNCC 4 cut(s) 102, 459, 600, 652
BspOI GCTAGC 1 cut(s) 452
BspPI GGATC 3 cut(s) 172, 668, 747
BspT107I GGYRCC 3 cut(s) 457, 598, 650
BsrDI GCAATG 2 cut(s) 27, 97
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 310, 676
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 15, 443, 594
BssMI GATC 4 cut(s) 164, 396, 660, 739
BssNI GRCGYC 3 cut(s) 310, 476, 697
BssT1I CCWWGG 3 cut(s) 15, 443, 594
Bst6I CTCTTC 2 cut(s) 90, 543
BstACI GRCGYC 3 cut(s) 310, 476, 697
BstAPI GCANNNNNTGC 2 cut(s) 44, 584
BstC8I GCNNGC 4 cut(s) 64, 256, 450, 576
BstDEI CTNAG 1 cut(s) 731
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 415, 559
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 4 cut(s) 167, 399, 663, 742
BstMAI GTCTC 3 cut(s) 228, 296, 483
BstMBI GATC 4 cut(s) 164, 396, 660, 739
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 115, 584
BstNSI RCATGY 2 cut(s) 535, 587
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 3 cut(s) 260, 580, 763
BstV1I GCAGC 3 cut(s) 34, 47, 50
BstV2I GAAGAC 2 cut(s) 32, 674
BstX2I RGATCY 1 cut(s) 739
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 2 cut(s) 218, 416
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 415, 559
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 4 cut(s) 64, 256, 450, 576
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 465
Csp6I GTAC 2 cut(s) 114, 529
CviAII CATG 7 cut(s) 16, 122, 214, 404, 487, 532, 584
CviQI GTAC 2 cut(s) 114, 529
DdeI CTNAG 1 cut(s) 731
DpnI GATC 4 cut(s) 166, 398, 662, 741
DpnII GATC 4 cut(s) 164, 396, 660, 739
DrdI GACNNNNNNGTC 1 cut(s) 676
DriI GACNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 676
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 90, 543
Eam1105I GACNNNNNGTC 1 cut(s) 309
EarI CTCTTC 2 cut(s) 90, 543
Eco130I CCWWGG 3 cut(s) 15, 443, 594
Eco147I AGGCCT 1 cut(s) 416
EcoT14I CCWWGG 3 cut(s) 15, 443, 594
EcoT22I ATGCAT 1 cut(s) 589
ErhI CCWWGG 3 cut(s) 15, 443, 594
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 7 cut(s) 19, 125, 217, 407, 490, 535, 587
FaqI GGGAC 2 cut(s) 388, 478
FatI CATG 7 cut(s) 15, 121, 213, 403, 486, 531, 583
FauI CCCGC 1 cut(s) 567
FauNDI CATATG 1 cut(s) 643
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 36, 39, 48, 474
FokI GGATG 2 cut(s) 422, 566
Fsp4HI GCNGC 4 cut(s) 36, 39, 48, 474
FspBI CTAG 5 cut(s) 293, 444, 449, 692, 722
GlaI GCGC 1 cut(s) 749
GluI GCNGC 4 cut(s) 36, 39, 48, 474
HaeIII GGCC 2 cut(s) 218, 416
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 465
HhaI GCGC 1 cut(s) 750
Hin1I GRCGYC 3 cut(s) 310, 476, 697
Hin1II CATG 7 cut(s) 19, 125, 217, 407, 490, 535, 587
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 557, 613, 709
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 311, 672
Hpy166II GTNNAC 2 cut(s) 258, 272
Hpy188I TCNGA 4 cut(s) 142, 208, 565, 612
Hpy188III TCNNGA 4 cut(s) 73, 227, 495, 664
Hpy8I GTNNAC 2 cut(s) 258, 272
HpyAV CCTTC 2 cut(s) 61, 616
HpyCH4IV ACGT 3 cut(s) 310, 377, 697
HpyCH4V TGCA 5 cut(s) 62, 90, 258, 290, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 115, 584
HpyF3I CTNAG 1 cut(s) 731
HpySE526I ACGT 3 cut(s) 310, 377, 697
Hsp92I GRCGYC 3 cut(s) 310, 476, 697
Hsp92II CATG 7 cut(s) 19, 125, 217, 407, 490, 535, 587
HspAI GCGC 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 164, 396, 660, 739
LmnI GCTCC 2 cut(s) 123, 389
LpnPI CCDG 8 cut(s) 117, 212, 264, 291, 310, 400, 657, 742
Lsp1109I GCAGC 3 cut(s) 34, 47, 50
LweI GCATC 1 cut(s) 14
MaeI CTAG 5 cut(s) 293, 444, 449, 692, 722
MaeII ACGT 3 cut(s) 310, 377, 697
MaeIII GTNAC 3 cut(s) 55, 311, 678
MalI GATC 4 cut(s) 166, 398, 662, 741
MboI GATC 4 cut(s) 164, 396, 660, 739
MboII GAAGA 5 cut(s) 37, 107, 560, 679, 697
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 5 cut(s) 260, 268, 386, 580, 763
MluCI AATT 2 cut(s) 177, 518
MlyI GAGTC 2 cut(s) 566, 718
Mph1103I ATGCAT 1 cut(s) 589
MslI CAYNNNNRTG 3 cut(s) 20, 218, 408
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 1 cut(s) 297
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 115, 584
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 643
NdeII GATC 4 cut(s) 164, 396, 660, 739
NheI GCTAGC 1 cut(s) 448
NlaIII CATG 7 cut(s) 19, 125, 217, 407, 490, 535, 587
NlaIV GGNNCC 4 cut(s) 102, 459, 600, 652
NmuCI GTSAC 3 cut(s) 55, 311, 678
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 2 cut(s) 535, 587
PceI AGGCCT 1 cut(s) 416
PciI ACATGT 1 cut(s) 531
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 4 cut(s) 37, 40, 49, 475
PleI GAGTC 2 cut(s) 565, 717
PpsI GAGTC 2 cut(s) 565, 717
PscI ACATGT 1 cut(s) 531
PspN4I GGNNCC 4 cut(s) 102, 459, 600, 652
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 739
RsaI GTAC 2 cut(s) 115, 530
RsaNI GTAC 2 cut(s) 114, 529
RseI CAYNNNNRTG 3 cut(s) 20, 218, 408
SatI GCNGC 4 cut(s) 36, 39, 48, 474
Sau3AI GATC 4 cut(s) 164, 396, 660, 739
SchI GAGTC 2 cut(s) 566, 718
SduI GDGCHC 5 cut(s) 260, 268, 386, 580, 763
SetI ASST 8 cut(s) 81, 313, 380, 454, 610, 627, 693, 700
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 3 cut(s) 20, 218, 408
Sse9I AATT 2 cut(s) 177, 518
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 2 cut(s) 473, 574
SspMI CTAG 5 cut(s) 293, 444, 449, 692, 722
StuI AGGCCT 1 cut(s) 416
StyI CCWWGG 3 cut(s) 15, 443, 594
TaiI ACGT 3 cut(s) 313, 380, 700
TaqI TCGA 2 cut(s) 8, 167
TasI AATT 2 cut(s) 177, 518
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 1 cut(s) 613
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 3 cut(s) 55, 311, 678
TseI GCWGC 3 cut(s) 35, 38, 47
Tsp45I GTSAC 3 cut(s) 55, 311, 678
TspDTI ATGAA 5 cut(s) 38, 108, 159, 375, 503
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 64
VneI GTGCAC 1 cut(s) 256
XceI RCATGY 2 cut(s) 535, 587
XmaJI CCTAGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 5 cut(s) 293, 444, 449, 692, 722
ZraI GACGTC 2 cut(s) 311, 698
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.