Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

8532640 .. 8533718

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14171.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTACCATGGCTACATCTCAAGCCTCCCTCACAGCTAGGCGCCTAGGCTATTCTCGAAGCTCTCTCTCCCATCAAGAAGAACCTGTGGATCTGGGTGACTTCTGGTGCCCAAAGAATGGCTTTGTCGCCCCTCGTCCTACAGCAACACCTTCAATGGTGTTTCGAGGTAACATGTCGGTTACTCTATCATCCCTTCCACCTGCTTCGCTCCCTTCTCTCTTCCCTAAAGAAAAGAGGGCTGTCAATATTAGGGAGATCCCTGCCTTCCCCTCTCCGATCAAGGTAACTAGAGTTCGGTGTGAGCGTGATGAGGAAGAGTCTCTAAATGGTAAGCGAGCTCAACATGCCCTGGCAATGGTTCCATTGCCTCTGAACCCTAATGAACTCGGCTTCTCTGTTAACCCTAATAGGGATTTGGGCATTGCTAAAACCGGGAAGTCTCCCTTGAAAAGAGGAAGACCGAGAGGCAGTAAGAACATGAAAAGGATTGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

167

Amino Acids

18.19

Weight (kDa)

10.72

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	2 cut(s)	42, 108
AccB7I	CCANNNNNTGG	1 cut(s)	119
AclWI	GGATC	2 cut(s)	99, 253
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	119, 358, 412
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	156, 451
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	38, 63, 341
AluI	AGCT	3 cut(s)	38, 63, 341
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	327, 447
AlwI	GGATC	2 cut(s)	99, 253
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	2 cut(s)	42, 108
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	343
BccI	CCATC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	327, 447
BfaI	CTAG	3 cut(s)	39, 47, 291
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	353, 436
BmiI	GGNNCC	3 cut(s)	44, 110, 363
BmrFI	CCNGG	2 cut(s)	353, 436
BpiI	GAAGAC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	9, 46, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 358, 412
Bse3DI	GCAATG	3 cut(s)	363, 365, 423
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	3 cut(s)	9, 46, 351
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	3 cut(s)	119, 358, 412
BseMI	GCAATG	3 cut(s)	363, 365, 423
BseSI	GKGCMC	1 cut(s)	113
BshNI	GGYRCC	2 cut(s)	42, 108
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	119, 358, 412
BsmAI	GTCTC	2 cut(s)	327, 447
Bsp1286I	GDGCHC	2 cut(s)	113, 343
Bsp143I	GATC	3 cut(s)	91, 258, 279
Bsp19I	CCATGG	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	44, 110, 363
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	99, 253
BspT107I	GGYRCC	2 cut(s)	42, 108
BsrDI	GCAATG	3 cut(s)	363, 365, 423
BssECI	CCNNGG	3 cut(s)	9, 46, 351
BssMI	GATC	3 cut(s)	91, 258, 279
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	9, 46
Bst2UI	CCWGG	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	227, 312
BstACI	GRCGYC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	339
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	94, 261, 282
BstMAI	GTCTC	2 cut(s)	327, 447
BstMBI	GATC	3 cut(s)	91, 258, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 347
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	2 cut(s)	178, 350
BstSCI	CCNGG	2 cut(s)	351, 434
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	91, 258
BstYI	RGATCY	2 cut(s)	91, 258
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	45
CviAII	CATG	4 cut(s)	10, 175, 347, 481
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	3 cut(s)	93, 260, 281
DpnII	GATC	3 cut(s)	91, 258, 279
Eam1104I	CTCTTC	2 cut(s)	227, 312
EarI	CTCTTC	2 cut(s)	227, 312
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	9, 46
Eco24I	GRGCYC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	9, 46
EcoT38I	GRGCYC	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	9, 46
FaeI	CATG	4 cut(s)	13, 178, 350, 484
FaiI	YATR	4 cut(s)	11, 176, 348, 482
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 431, 463
FatI	CATG	4 cut(s)	9, 174, 346, 480
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	343
FspBI	CTAG	3 cut(s)	39, 47, 291
GlaI	GCGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	13, 178, 350, 484
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	1 cut(s)	320
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	279, 375
Hpy188III	TCNNGA	2 cut(s)	57, 77
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	4 cut(s)	162, 206, 225, 277
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 347
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	13, 178, 350, 484
HspAI	GCGC	1 cut(s)	43
KasI	GGCGCC	1 cut(s)	42
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	91, 258, 279
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	80, 91, 99, 216, 276, 338, 365, 448
MaeI	CTAG	3 cut(s)	39, 47, 291
MaeIII	GTNAC	4 cut(s)	98, 170, 181, 286
MalI	GATC	3 cut(s)	93, 260, 281
MboI	GATC	3 cut(s)	91, 258, 279
MboII	GAAGA	4 cut(s)	92, 214, 329, 471
MflI	RGATCY	2 cut(s)	91, 258
MhlI	GDGCHC	2 cut(s)	113, 343
Mly113I	GGCGCC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	402, 499
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	353, 436
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	11, 347
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	91, 258, 279
NlaIII	CATG	4 cut(s)	13, 178, 350, 484
NlaIV	GGNNCC	3 cut(s)	44, 110, 363
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	178, 350
PaqCI	CACCTGC	1 cut(s)	211
PciI	ACATGT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	44, 110, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	279, 311
PsuI	RGATCY	2 cut(s)	91, 258
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	402, 499
Sau3AI	GATC	3 cut(s)	91, 258, 279
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	353, 436
SduI	GDGCHC	2 cut(s)	113, 343
SetI	ASST	8 cut(s)	40, 65, 88, 154, 172, 205, 288, 343
SfcI	CTRYAG	1 cut(s)	141
SfoI	GGCGCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	42
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	3 cut(s)	39, 47, 291
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	351, 434
StyI	CCWWGG	2 cut(s)	9, 46
TaqI	TCGA	2 cut(s)	58, 166
TaqII	GACCGA	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	402, 499
Tru9I	TTAA	2 cut(s)	402, 499
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	399, 497
Van91I	CCANNNNNTGG	1 cut(s)	119
XceI	RCATGY	2 cut(s)	178, 350
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	3 cut(s)	39, 47, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.