Rroxscaffold_6G00411570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000172
Physical Location & Seq
Reverse (-)
34142938 .. 34152592
9655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411570.1

Sequence Viewer

Length: 618 bp
ATGAGCCAACCAGCAAAAATTTCCTGCCGCGTTTTTTACTCCAAAATCTTGAGAATTCTTGGACTCTTGTTCTTCAAATCCATATCTGCGGAGAATTCAGAATTTCAAAACCCTCAGTTTCATGAGAGTGAACAATGGTATTTTATTGTGGCTGAGATTGTTGGGTATGACGGTTTAATACTCCTTTGTGACCCAAAAGGGAAGAGCTCAAAGAAAAGGGGACGAACCGGTGGCACTAGGAACAATCCTAAGCAAGCGTTGAAACCCAAGGACGGGGAGTCAATCGAGACTGGGTCGGTGGCTTCAGATCTTGGTGCTCACAGTGATGTGGATGTGGCACAGGTCCCTTGTGCTAAGGAGAACTATGTTGTAGGCTACAACTGTTACTGGTATGCTAAGTGGAGTGGTACACCAGGAGGGTCATTAGGCCTCAAGCTTCCCATGCTGGTGGTTTTGGGTCTGAGTAATGAACGACCCACTAGAAGGCCAATAATGCTCGTCTATGGCACGACCAAACTTTTTCACCGACCCAAGACCGTAAAGGAACGACCCACTAGAAGGCCGAAGAGAAGATTATCTCTCGCCACATCCCGTAGTGCACTCGACCAACAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

9.85

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 2 cut(s) 28, 89
AcsI RAATTY 4 cut(s) 18, 54, 94, 101
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 4 cut(s) 272, 273, 483, 558
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 3 cut(s) 76, 107, 262
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 207, 436
AluI AGCT 2 cut(s) 207, 436
Alw21I GWGCWC 3 cut(s) 209, 319, 601
Alw26I GTCTC 1 cut(s) 281
Alw44I GTGCAC 1 cut(s) 597
AoxI GGCC 3 cut(s) 427, 485, 560
ApaLI GTGCAC 1 cut(s) 597
ApoI RAATTY 4 cut(s) 18, 54, 94, 101
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 3 cut(s) 209, 319, 601
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 237, 480, 555
BglII AGATCT 1 cut(s) 307
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 343
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 414
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 249, 354
BpuEI CTTGAG 2 cut(s) 70, 416
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 273, 483, 558
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 295, 392
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 337, 587
BseLI CCNNNNNNNGG 4 cut(s) 272, 273, 483, 558
BseMII CTCAG 3 cut(s) 128, 144, 452
BseNI ACTGG 2 cut(s) 295, 392
BseSI GKGCMC 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 429, 487, 562
BshTI ACCGGT 1 cut(s) 227
BsiHKAI GWGCWC 3 cut(s) 209, 319, 601
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 234, 329
BslI CCNNNNNNNGG 4 cut(s) 272, 273, 483, 558
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 234, 329
BsnI GGCC 3 cut(s) 429, 487, 562
Bsp1286I GDGCHC 3 cut(s) 209, 319, 601
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 28, 89
BspANI GGCC 3 cut(s) 429, 487, 562
BspCNI CTCAG 3 cut(s) 127, 145, 453
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 295, 392
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 4 cut(s) 173, 323, 383, 538
Bst6I CTCTTC 2 cut(s) 197, 560
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 6 cut(s) 114, 153, 249, 354, 396, 461
BstF5I GGATG 2 cut(s) 337, 587
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 442, 493
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 3 cut(s) 429, 487, 562
BtsCI GGATG 2 cut(s) 337, 587
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 408
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 2 cut(s) 122, 442
CviJI RGCY 9 cut(s) 6, 152, 207, 302, 375, 429, 436, 487, 562
CviKI_1 RGCY 9 cut(s) 6, 152, 207, 302, 375, 429, 436, 487, 562
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 6 cut(s) 114, 153, 249, 354, 396, 461
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 197, 560
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 2 cut(s) 197, 560
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 54, 94
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 125, 445
FaiI YATR 7 cut(s) 83, 123, 168, 366, 393, 443, 504
FaqI GGGAC 2 cut(s) 234, 329
FatI CATG 2 cut(s) 121, 441
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 2 cut(s) 344, 574
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 3 cut(s) 237, 480, 555
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 3 cut(s) 429, 487, 562
HapII CCGG 1 cut(s) 228
Hin1II CATG 2 cut(s) 125, 445
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 2 cut(s) 63, 278
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 3 cut(s) 131, 410, 599
Hpy188I TCNGA 3 cut(s) 100, 307, 462
Hpy188III TCNNGA 3 cut(s) 49, 122, 286
Hpy8I GTNNAC 3 cut(s) 131, 410, 599
HpyAV CCTTC 2 cut(s) 477, 552
HpyCH4III ACNGT 4 cut(s) 173, 323, 383, 538
HpyCH4V TGCA 1 cut(s) 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 493
HpyF3I CTNAG 6 cut(s) 114, 153, 249, 354, 396, 461
Hsp92II CATG 2 cut(s) 125, 445
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 24, 37, 241, 276, 326, 373, 399, 426, 431
MaeI CTAG 3 cut(s) 237, 480, 555
MaeIII GTNAC 2 cut(s) 188, 383
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 4 cut(s) 64, 214, 577, 582
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 209, 319, 601
MluCI AATT 4 cut(s) 18, 54, 94, 101
MlyI GAGTC 2 cut(s) 57, 287
MnlI CCTC 3 cut(s) 123, 410, 440
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 3 cut(s) 126, 324, 446
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 442, 493
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 125, 445
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 188
PagI TCATGA 1 cut(s) 121
PceI AGGCCT 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 57, 286
PpsI GAGTC 2 cut(s) 57, 286
PpuMI RGGWCCY 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 343
PspPPI RGGWCCY 1 cut(s) 343
PsuI RGATCY 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 3 cut(s) 126, 324, 446
SacI GAGCTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 2 cut(s) 57, 287
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 3 cut(s) 209, 319, 601
SetI ASST 3 cut(s) 209, 345, 438
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 126, 324, 446
SmlI CTYRAG 2 cut(s) 49, 431
SmoI CTYRAG 2 cut(s) 49, 431
Sse9I AATT 4 cut(s) 18, 54, 94, 101
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 2 cut(s) 28, 89
SspMI CTAG 3 cut(s) 237, 480, 555
SstI GAGCTC 1 cut(s) 209
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 4 cut(s) 173, 323, 383, 538
TaqI TCGA 2 cut(s) 285, 603
TasI AATT 4 cut(s) 18, 54, 94, 101
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 110, 483
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 292
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 4 cut(s) 18, 54, 94, 101
XspI CTAG 3 cut(s) 237, 480, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.