Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

19283214 .. 19283997

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTGCCCTAGGGAGACTGAAGAAAACCCTAGAATGTTAGAGGATCTGGTTCTGACAATGAGTGCACCACCCATGAAGAGACCTACTCAGATTCGTGCAATCCCAAAATTTTCATCTCCGGCAAAGATTGCCGAAGTTCGACGTGACAGGGATGAGGAGGAGCCAACGGATGGGAAGCATGCTCGACATGCCCTAGCTCTGGTGCCTTTGCCTCTGAATCCTAAAGAGACGAGGTTTACCATTTCAGATGGTGTCCCAAAATTTTCATCTCCGGCAAAGATTGTCGGAGTTCGATGTGACAGGGATGAGGAGGAGCCGATGGATGGGAAGCATGGTGGTGCACTAGAGATTAAGAGAACTGGAAAATCCCCAAAGAAATCTCCAAAGAAGCGAGGACGCCCGAGAGGGAGTCGGAACAAGAAGAAGCTGCAGTTGGGAGTGATATTGGATTCAATGGAACCAGGATCGGCAAAGACTACCGGCGGTGACACAGGCCTCGAATCAAAGGCTAAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

174

Amino Acids

19.04

Weight (kDa)

9.88

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	2 cut(s)	51, 472
AcsI	RAATTY	2 cut(s)	107, 260
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	170, 199, 323
AgsI	TTSAA	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	197, 427
AluI	AGCT	2 cut(s)	197, 427
Alw21I	GWGCWC	2 cut(s)	67, 343
Alw26I	GTCTC	3 cut(s)	8, 73, 221
Alw44I	GTGCAC	2 cut(s)	63, 339
AlwI	GGATC	2 cut(s)	51, 472
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	2 cut(s)	63, 339
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	107, 260
AspA2I	CCTAGG	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	400
AvrII	CCTAGG	1 cut(s)	8
BaeGI	GKGCMC	3 cut(s)	8, 67, 343
BanI	GGYRCC	1 cut(s)	202
Bbv12I	GWGCWC	2 cut(s)	67, 343
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	4 cut(s)	164, 242, 313, 317
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	8, 73, 221
BfaI	CTAG	4 cut(s)	9, 30, 194, 344
BfmI	CTRYAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	428
BlnI	CCTAGG	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	143
BmiI	GGNNCC	4 cut(s)	162, 204, 315, 459
BmrFI	CCNGG	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
Bpu10I	CCTNAGC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 199, 323
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	4 cut(s)	157, 175, 310, 328
BseLI	CCNNNNNNNGG	3 cut(s)	170, 199, 323
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	4 cut(s)	170, 173, 323, 326
BseSI	GKGCMC	3 cut(s)	8, 67, 343
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	67, 343
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	119, 272, 480
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	170, 199, 323
BsmAI	GTCTC	3 cut(s)	8, 73, 221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	495
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	3 cut(s)	8, 67, 343
Bsp143I	GATC	2 cut(s)	43, 464
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	162, 204, 315, 459
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	2 cut(s)	51, 472
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	43, 464
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	87, 510
BstF5I	GGATG	4 cut(s)	157, 175, 310, 328
BstKTI	GATC	2 cut(s)	46, 467
BstMAI	GTCTC	3 cut(s)	8, 73, 221
BstMBI	GATC	2 cut(s)	43, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 188
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	2 cut(s)	182, 191
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	3 cut(s)	8, 67, 343
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	495
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	4 cut(s)	157, 175, 310, 328
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	479
CseI	GACGC	1 cut(s)	405
CviAII	CATG	4 cut(s)	73, 179, 188, 332
CviJI	RGCY	6 cut(s)	163, 197, 316, 427, 495, 509
CviKI_1	RGCY	6 cut(s)	163, 197, 316, 427, 495, 509
DdeI	CTNAG	2 cut(s)	87, 510
DpnI	GATC	2 cut(s)	45, 466
DpnII	GATC	2 cut(s)	43, 464
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	4 cut(s)	76, 182, 191, 335
FaiI	YATR	4 cut(s)	74, 180, 189, 333
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	72, 178, 187, 331
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	4 cut(s)	164, 182, 317, 335
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	4 cut(s)	9, 30, 194, 344
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	3 cut(s)	119, 272, 480
HgaI	GACGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	76, 182, 191, 335
HinfI	GANTC	5 cut(s)	91, 217, 409, 449, 500
HpaII	CCGG	3 cut(s)	119, 272, 480
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	3 cut(s)	65, 237, 341
Hpy188I	TCNGA	6 cut(s)	54, 90, 216, 247, 287, 414
Hpy8I	GTNNAC	3 cut(s)	65, 237, 341
Hpy99I	CGWCG	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	65, 98, 341, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 188
HpyF3I	CTNAG	2 cut(s)	87, 510
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	4 cut(s)	76, 182, 191, 335
Kzo9I	GATC	2 cut(s)	43, 464
LmnI	GCTCC	2 cut(s)	160, 313
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	4 cut(s)	9, 30, 194, 344
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	143, 296, 485
MalI	GATC	2 cut(s)	45, 466
MboI	GATC	2 cut(s)	43, 464
MboII	GAAGA	3 cut(s)	32, 88, 433
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	3 cut(s)	8, 67, 343
MluCI	AATT	2 cut(s)	107, 260
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	2 cut(s)	265, 392
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	3 cut(s)	119, 272, 480
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	128, 188
NdeII	GATC	2 cut(s)	43, 464
NlaIII	CATG	4 cut(s)	76, 182, 191, 335
NlaIV	GGNNCC	4 cut(s)	162, 204, 315, 459
NmuCI	GTSAC	3 cut(s)	143, 296, 485
NspI	RCATGY	2 cut(s)	182, 191
PaeI	GCATGC	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	91, 217, 449, 500
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	4 cut(s)	162, 204, 315, 459
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	43, 464
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	3 cut(s)	8, 67, 343
SetI	ASST	5 cut(s)	85, 145, 199, 236, 429
SfcI	CTRYAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	336
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	107, 260
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	4 cut(s)	9, 30, 194, 344
StuI	AGGCCT	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	4 cut(s)	139, 184, 292, 498
TasI	AATT	2 cut(s)	107, 260
TfiI	GAWTC	4 cut(s)	91, 217, 449, 500
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	3 cut(s)	143, 296, 485
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	3 cut(s)	143, 296, 485
TspDTI	ATGAA	3 cut(s)	89, 102, 255
TspGWI	ACGGA	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	170
VneI	GTGCAC	2 cut(s)	63, 339
XapI	RAATTY	2 cut(s)	107, 260
XceI	RCATGY	2 cut(s)	182, 191
XmaJI	CCTAGG	1 cut(s)	8
XspI	CTAG	4 cut(s)	9, 30, 194, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.