Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

21587092 .. 21588224

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGGTGACAGAGGCTTGGATCAGAGCATTGATGATTGCTAGTGTTCACATCAGGTCGGAAACTAGCATGGTCCGGCCTGTGGTTTTCAACGCTTTCCGTAGTGCCGTCCGCTCCATGGGGCGGCTTTCGGTCCTAGTGGTGGTCCAGTCTCGAGGTGACAGGTTCTTTTTCACCTTCGTCAACGAGCGAGATCTGAATTGGGTCCTAAAAGGAGGACCATGGGCGTATCAACGAACCATGCTCTTGCTCAATCACTACGATGGCTTCTCTAACATAGCCGCGATTCTGCTGGATTTTGTTTGGATATGGGTGGAGGTTTTGGGGCTCAACAACCGGCCAAATCGAGATCCATTTTTTGGACATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

124

Amino Acids

14.24

Weight (kDa)

10.67

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	284
AciI	CCGC	4 cut(s)	5, 112, 124, 282
AclWI	GGATC	2 cut(s)	29, 344
AcoI	YGGCCR	1 cut(s)	338
AfiI	CCNNNNNNNGG	5 cut(s)	82, 118, 123, 142, 359
AgsI	TTSAA	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	29, 344
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	77, 338
AspS9I	GGNCC	5 cut(s)	73, 133, 145, 205, 218
AsuHPI	GGTGA	3 cut(s)	19, 166, 170
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	5 cut(s)	73, 133, 145, 205, 218
BanII	GRGCYC	1 cut(s)	330
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	42, 66, 137
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	125, 282
BlsI	GCNGC	2 cut(s)	126, 283
Bme18I	GGWCC	5 cut(s)	73, 133, 145, 205, 218
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	5 cut(s)	73, 133, 145, 205, 218
BmiI	GGNNCC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	117, 221
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 118, 123, 142, 359
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	117, 221
BseLI	CCNNNNNNNGG	5 cut(s)	82, 118, 123, 142, 359
BseNI	ACTGG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	79, 340
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	76, 337
BslI	CCNNNNNNNGG	5 cut(s)	82, 118, 123, 142, 359
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	79, 340
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	21, 193, 349
Bsp19I	CCATGG	2 cut(s)	117, 221
BspACI	CCGC	4 cut(s)	5, 112, 124, 282
BspANI	GGCC	2 cut(s)	79, 340
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	2 cut(s)	29, 344
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	117, 221
BssMI	GATC	3 cut(s)	21, 193, 349
BssT1I	CCWWGG	2 cut(s)	117, 221
BstDSI	CCRYGG	2 cut(s)	117, 221
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	24, 196, 352
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	21, 193, 349
BstUI	CGCG	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	193, 349
BstYI	RGATCY	2 cut(s)	193, 349
BsuRI	GGCC	2 cut(s)	79, 340
BtgI	CCRYGG	2 cut(s)	117, 221
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	5 cut(s)	73, 133, 145, 205, 218
CviAII	CATG	4 cut(s)	70, 118, 222, 241
CviJI	RGCY	7 cut(s)	17, 79, 127, 267, 281, 328, 340
CviKI_1	RGCY	7 cut(s)	17, 79, 127, 267, 281, 328, 340
DpnI	GATC	3 cut(s)	23, 195, 351
DpnII	GATC	3 cut(s)	21, 193, 349
EaeI	YGGCCR	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	117, 221
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	5 cut(s)	73, 133, 145, 205, 218
Eco88I	CYCGRG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	117, 221
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	117, 221
FaeI	CATG	4 cut(s)	73, 121, 225, 244
FaiI	YATR	9 cut(s)	71, 119, 223, 242, 278, 310, 366, 368, 370
FatI	CATG	4 cut(s)	69, 117, 221, 240
Fnu4HI	GCNGC	2 cut(s)	125, 282
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	125, 282
FspBI	CTAG	3 cut(s)	42, 66, 137
GluI	GCNGC	2 cut(s)	125, 282
HaeIII	GGCC	2 cut(s)	79, 340
HapII	CCGG	2 cut(s)	76, 337
Hin1II	CATG	4 cut(s)	73, 121, 225, 244
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	76, 337
HphI	GGTGA	3 cut(s)	19, 166, 170
Hpy166II	GTNNAC	2 cut(s)	49, 184
Hpy188I	TCNGA	3 cut(s)	26, 61, 198
Hpy188III	TCNNGA	2 cut(s)	153, 347
Hpy8I	GTNNAC	2 cut(s)	49, 184
HpyAV	CCTTC	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	73, 121, 225, 244
Kzo9I	GATC	3 cut(s)	21, 193, 349
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	40, 89, 93, 148, 161, 278, 350
MaeI	CTAG	3 cut(s)	42, 66, 137
MaeIII	GTNAC	2 cut(s)	7, 158
MalI	GATC	3 cut(s)	23, 195, 351
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	3 cut(s)	21, 193, 349
MflI	RGATCY	2 cut(s)	193, 349
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	7, 149, 209, 310
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	2 cut(s)	76, 337
MvnI	CGCG	1 cut(s)	284
NcoI	CCATGG	2 cut(s)	117, 221
NdeII	GATC	3 cut(s)	21, 193, 349
NlaIII	CATG	4 cut(s)	73, 121, 225, 244
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	7, 158
PaeR7I	CTCGAG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	126, 283
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	5 cut(s)	73, 133, 145, 205, 218
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	193, 349
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	2 cut(s)	125, 282
Sau3AI	GATC	3 cut(s)	21, 193, 349
Sau96I	GGNCC	5 cut(s)	73, 133, 145, 205, 218
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	5 cut(s)	59, 160, 167, 179, 321
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	5 cut(s)	73, 133, 145, 205, 218
SlaI	CTCGAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	4 cut(s)	5, 112, 124, 282
SspMI	CTAG	3 cut(s)	42, 66, 137
StyI	CCWWGG	2 cut(s)	117, 221
TaqI	TCGA	2 cut(s)	154, 346
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	199
TauI	GCSGC	2 cut(s)	127, 284
TfiI	GAWTC	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	7, 158
Tsp45I	GTSAC	2 cut(s)	7, 158
TspGWI	ACGGA	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	5 cut(s)	73, 133, 145, 205, 218
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	3 cut(s)	42, 66, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.