Rmu_sc0023989.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023989.1
OG0000172
Physical Location & Seq
Forward (+)
20140 .. 21361
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023989.1_g000005.1.cds

Sequence Viewer

Length: 879 bp
atgactactgctattgtctctatgactgccaggctagtgaccaagttgtcgctcagagatggtgaagaaccggtggacttggggaaccatagggttccggggaaggactttcttgctcgccagttttatttagtggggaaactcaacacttgtagggcagtggtcttggattcgttccggagcatcccactaggtatcttgactgaacccacggtcaggctggtgggagggacgattggagaggttctggaggtggatcgtttggctcttcgtcgtggggaagctcgggtccagcttactctatccatcaatgacctggtgcacctggatcgtaggattagggtttctcccactaatgtcctgacgctgcgcttctggtatgagctgcttttggggcgctgcaggctgtgcgctctcttgaatcatagtgggcaacggtgtcctagggaggatgagtcggaaaccgacactgtggtggaggaaggctcgcagcaggctccagggtcggctctcccaggcctagtgtttagggctaactcccagccctctccttccttgctttcgaccttcaaagttcctaacttgctgaagaagaaacacatgcagatccgtcctcttccggcgttggtgactttgcctaggtttgaggacacgtctgcttctattccagtagtgggggtgcgccgccctaggtgtcgtcgcctcctaaggtttataagaagaaaggtaggccttgggtacagagaaacaagattaagctggcggcgtctgtgtggtggctctgagtccatggtgttaggctcaattgaggagggtcctggtagtatgcatggtatgcatgagggagtggcagcatggcctgcatcccggtccgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

292

Amino Acids

32.52

Weight (kDa)

10.21

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AasI GACNNNNNNGTC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 2 cut(s) 685, 763
AclWI GGATC 3 cut(s) 264, 336, 601
AcuI CTGAAG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 216, 674
AflIII ACRYGT 1 cut(s) 651
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 2 cut(s) 421, 571
AjiI CACGTC 1 cut(s) 654
AjnI CCWGG 6 cut(s) 29, 315, 324, 499, 514, 817
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 284, 295, 385, 759
AluI AGCT 4 cut(s) 284, 295, 385, 759
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 320
AlwI GGATC 3 cut(s) 264, 336, 601
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 3 cut(s) 517, 730, 857
ApaLI GTGCAC 1 cut(s) 320
ApeKI GCWGC 5 cut(s) 367, 385, 399, 490, 851
AsiGI ACCGGT 1 cut(s) 70
AspA2I CCTAGG 3 cut(s) 443, 638, 689
AspLEI GCGC 4 cut(s) 372, 399, 413, 684
AspS9I GGNCC 3 cut(s) 289, 815, 870
AsuC2I CCSGG 2 cut(s) 99, 868
AsuHPI GGTGA 2 cut(s) 74, 640
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 3 cut(s) 289, 815, 870
AvrII CCTAGG 3 cut(s) 443, 638, 689
AxyI CCTNAGG 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 354, 372, 386, 502, 863
BccI CCATC 2 cut(s) 53, 314
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 6 cut(s) 31, 317, 326, 501, 516, 819
BcnI CCSGG 2 cut(s) 99, 868
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 6 cut(s) 35, 191, 444, 521, 639, 690
BfmI CTRYAG 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 7 cut(s) 368, 386, 400, 491, 685, 764, 852
BlnI CCTAGG 3 cut(s) 443, 638, 689
BlsI GCNGC 7 cut(s) 369, 387, 401, 492, 686, 765, 853
Bme1390I CCNGG 8 cut(s) 31, 99, 317, 326, 501, 516, 819, 868
Bme18I GGWCC 3 cut(s) 289, 815, 870
BmeT110I CYCGRG 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 654
BmgT120I GGNCC 3 cut(s) 289, 815, 870
BmiI GGNNCC 5 cut(s) 86, 96, 290, 498, 816
BmrFI CCNGG 8 cut(s) 31, 99, 317, 326, 501, 516, 819, 868
BmsI GCATC 2 cut(s) 192, 872
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpmI CTGGAG 2 cut(s) 269, 483
BpuMI CCSGG 2 cut(s) 99, 868
BsaHI GRCGYC 1 cut(s) 766
BsaJI CCNNGG 9 cut(s) 98, 210, 443, 500, 514, 638, 689, 733, 789
BsaWI WCCGGW 2 cut(s) 70, 177
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 674
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 121, 668
Bse21I CCTNAGG 1 cut(s) 707
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 6 cut(s) 31, 317, 326, 501, 516, 819
BseDI CCNNGG 9 cut(s) 98, 210, 443, 500, 514, 638, 689, 733, 789
BseGI GGATG 3 cut(s) 183, 457, 863
BseLI CCNNNNNNNGG 2 cut(s) 216, 674
BseMII CTCAG 2 cut(s) 67, 774
BseNI ACTGG 2 cut(s) 121, 668
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 5 cut(s) 354, 372, 386, 502, 863
BseYI CCCAGC 1 cut(s) 540
BshFI GGCC 3 cut(s) 519, 732, 859
BshTI ACCGGT 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 5 cut(s) 71, 98, 178, 620, 868
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 216, 674
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 3 cut(s) 519, 732, 859
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 3 cut(s) 256, 328, 606
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 2 cut(s) 685, 763
BspANI GGCC 3 cut(s) 519, 732, 859
BspCNI CTCAG 2 cut(s) 66, 775
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 5 cut(s) 86, 96, 290, 498, 816
BspMAI CTGCAG 1 cut(s) 404
BspPI GGATC 3 cut(s) 264, 336, 601
BspQI GCTCTTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 121, 668
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 9 cut(s) 98, 210, 443, 500, 514, 638, 689, 733, 789
BssMI GATC 3 cut(s) 256, 328, 606
BssNI GRCGYC 1 cut(s) 766
BssT1I CCWWGG 5 cut(s) 443, 638, 689, 733, 789
Bst2UI CCWGG 6 cut(s) 31, 317, 326, 501, 516, 819
Bst4CI ACNGT 3 cut(s) 214, 438, 472
Bst6I CTCTTC 2 cut(s) 273, 621
BstACI GRCGYC 1 cut(s) 766
BstAPI GCANNNNNTGC 3 cut(s) 408, 835, 860
BstC8I GCNNGC 6 cut(s) 118, 404, 488, 495, 761, 861
BstDEI CTNAG 3 cut(s) 53, 707, 783
BstDSI CCRYGG 2 cut(s) 210, 789
BstF5I GGATG 3 cut(s) 183, 457, 863
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 4 cut(s) 372, 399, 413, 684
BstKTI GATC 3 cut(s) 259, 331, 609
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 256, 328, 606
BstMWI GCNNNNNNNGC 5 cut(s) 394, 403, 408, 835, 860
BstNI CCWGG 6 cut(s) 31, 317, 326, 501, 516, 819
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 8 cut(s) 29, 97, 315, 324, 499, 514, 817, 866
BstSFI CTRYAG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 354, 372, 386, 502, 863
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 707
BsuRI GGCC 3 cut(s) 519, 732, 859
BtgI CCRYGG 2 cut(s) 210, 789
BtrI CACGTC 1 cut(s) 654
BtsCI GGATG 3 cut(s) 183, 457, 863
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 468
Cac8I GCNNGC 6 cut(s) 118, 404, 488, 495, 761, 861
CfoI GCGC 4 cut(s) 372, 399, 413, 684
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 289, 815, 870
CpoI CGGWCCG 1 cut(s) 870
CseI GACGC 2 cut(s) 373, 755
CsiI ACCWGGT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 739
CspAI ACCGGT 1 cut(s) 70
CspI CGGWCCG 1 cut(s) 870
CviAII CATG 5 cut(s) 601, 790, 830, 839, 855
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 3 cut(s) 53, 707, 783
DpnI GATC 3 cut(s) 258, 330, 608
DpnII GATC 3 cut(s) 256, 328, 606
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 273, 621
EarI CTCTTC 2 cut(s) 273, 621
Eco130I CCWWGG 5 cut(s) 443, 638, 689, 733, 789
Eco147I AGGCCT 2 cut(s) 519, 732
Eco47I GGWCC 3 cut(s) 289, 815, 870
Eco57I CTGAAG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 815
EcoRII CCWGG 6 cut(s) 29, 315, 324, 499, 514, 817
EcoT14I CCWWGG 5 cut(s) 443, 638, 689, 733, 789
EcoT22I ATGCAT 2 cut(s) 831, 840
ErhI CCWWGG 5 cut(s) 443, 638, 689, 733, 789
FaeI CATG 5 cut(s) 604, 793, 833, 842, 858
FaqI GGGAC 1 cut(s) 244
FatI CATG 5 cut(s) 600, 789, 829, 838, 854
Fnu4HI GCNGC 7 cut(s) 368, 386, 400, 491, 685, 764, 852
FokI GGATG 3 cut(s) 170, 464, 850
Fsp4HI GCNGC 7 cut(s) 368, 386, 400, 491, 685, 764, 852
FspBI CTAG 6 cut(s) 35, 191, 444, 521, 639, 690
GlaI GCGC 4 cut(s) 371, 398, 412, 683
GluI GCNGC 7 cut(s) 368, 386, 400, 491, 685, 764, 852
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 2 cut(s) 269, 483
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 3 cut(s) 519, 732, 859
HapII CCGG 5 cut(s) 71, 98, 178, 620, 868
HgaI GACGC 2 cut(s) 373, 755
HhaI GCGC 4 cut(s) 372, 399, 413, 684
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 5 cut(s) 604, 793, 833, 842, 858
Hin6I GCGC 4 cut(s) 370, 397, 411, 682
HinP1I GCGC 4 cut(s) 370, 397, 411, 682
HinfI GANTC 4 cut(s) 170, 421, 455, 785
HpaII CCGG 5 cut(s) 71, 98, 178, 620, 868
HphI GGTGA 2 cut(s) 74, 640
Hpy166II GTNNAC 2 cut(s) 76, 322
Hpy188I TCNGA 4 cut(s) 56, 460, 784, 874
Hpy188III TCNNGA 5 cut(s) 178, 199, 248, 361, 418
Hpy8I GTNNAC 2 cut(s) 76, 322
Hpy99I CGWCG 2 cut(s) 276, 702
HpyAV CCTTC 4 cut(s) 97, 476, 561, 577
HpyCH4III ACNGT 3 cut(s) 214, 438, 472
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 6 cut(s) 322, 402, 604, 829, 838, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 403, 408, 835, 860
HpyF3I CTNAG 3 cut(s) 53, 707, 783
HpySE526I ACGT 1 cut(s) 653
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 5 cut(s) 604, 793, 833, 842, 858
HspAI GCGC 4 cut(s) 370, 397, 411, 682
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 256, 328, 606
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 180, 502
Lsp1109I GCAGC 5 cut(s) 354, 372, 386, 502, 863
LweI GCATC 2 cut(s) 192, 872
MabI ACCWGGT 1 cut(s) 315
MaeI CTAG 6 cut(s) 35, 191, 444, 521, 639, 690
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 37, 628
MalI GATC 3 cut(s) 258, 330, 608
MboI GATC 3 cut(s) 256, 328, 606
MboII GAAGA 6 cut(s) 77, 260, 601, 604, 608, 732
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 804
MlyI GAGTC 2 cut(s) 464, 794
MmeI TCCRAC 1 cut(s) 438
Mph1103I ATGCAT 2 cut(s) 831, 840
MroI TCCGGA 1 cut(s) 177
MseI TTAA 1 cut(s) 755
MslI CAYNNNNRTG 1 cut(s) 473
MspI CCGG 5 cut(s) 71, 98, 178, 620, 868
MspR9I CCNGG 8 cut(s) 31, 99, 317, 326, 501, 516, 819, 868
MunI CAATTG 1 cut(s) 804
MvaI CCWGG 6 cut(s) 31, 317, 326, 501, 516, 819
MwoI GCNNNNNNNGC 5 cut(s) 394, 403, 408, 835, 860
NciI CCSGG 2 cut(s) 99, 868
NcoI CCATGG 1 cut(s) 789
NdeII GATC 3 cut(s) 256, 328, 606
NlaIII CATG 5 cut(s) 604, 793, 833, 842, 858
NlaIV GGNNCC 5 cut(s) 86, 96, 290, 498, 816
NmuCI GTSAC 2 cut(s) 37, 628
NsiI ATGCAT 2 cut(s) 831, 840
NspI RCATGY 1 cut(s) 604
OliI CACNNNNGTG 1 cut(s) 473
PceI AGGCCT 2 cut(s) 519, 732
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 170, 421
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 7 cut(s) 369, 387, 401, 492, 686, 765, 853
PleI GAGTC 2 cut(s) 463, 793
PpsI GAGTC 2 cut(s) 463, 793
PpuMI RGGWCCY 1 cut(s) 815
PsiI TTATAA 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 6 cut(s) 29, 315, 324, 499, 514, 817
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 6 cut(s) 29, 315, 324, 499, 514, 817
PspN4I GGNNCC 5 cut(s) 86, 96, 290, 498, 816
PspPI GGNCC 3 cut(s) 289, 815, 870
PspPPI RGGWCCY 1 cut(s) 815
PstI CTGCAG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 473
Rsr2I CGGWCCG 1 cut(s) 870
RsrII CGGWCCG 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 7 cut(s) 368, 386, 400, 491, 685, 764, 852
Sau3AI GATC 3 cut(s) 256, 328, 606
Sau96I GGNCC 3 cut(s) 289, 815, 870
SchI GAGTC 2 cut(s) 464, 794
ScrFI CCNGG 8 cut(s) 31, 99, 317, 326, 501, 516, 819, 868
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 315
SfaNI GCATC 2 cut(s) 192, 872
SfcI CTRYAG 1 cut(s) 400
SinI GGWCC 3 cut(s) 289, 815, 870
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 1 cut(s) 804
SseBI AGGCCT 2 cut(s) 519, 732
SsiI CCGC 2 cut(s) 685, 763
SspMI CTAG 6 cut(s) 35, 191, 444, 521, 639, 690
StuI AGGCCT 2 cut(s) 519, 732
StyD4I CCNGG 8 cut(s) 29, 97, 315, 324, 499, 514, 817, 866
StyI CCWWGG 5 cut(s) 443, 638, 689, 733, 789
TaaI ACNGT 3 cut(s) 214, 438, 472
TaiI ACGT 1 cut(s) 656
TaqI TCGA 1 cut(s) 563
TasI AATT 1 cut(s) 804
TauI GCSGC 2 cut(s) 687, 766
TfiI GAWTC 2 cut(s) 170, 421
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 2 cut(s) 165, 475
TseFI GTSAC 2 cut(s) 37, 628
TseI GCWGC 5 cut(s) 367, 385, 399, 490, 851
Tsp45I GTSAC 2 cut(s) 37, 628
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 2 cut(s) 165, 475
VneI GTGCAC 1 cut(s) 320
VpaK11BI GGWCC 3 cut(s) 289, 815, 870
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 313
XmaJI CCTAGG 3 cut(s) 443, 638, 689
XspI CTAG 6 cut(s) 35, 191, 444, 521, 639, 690
Zsp2I ATGCAT 2 cut(s) 831, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.