Rmu_ssc0000323.1_g000030

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000323.1
OG0000172
Physical Location & Seq
Forward (+)
126375 .. 127587
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000323.1_g000030.1.cds

Sequence Viewer

Length: 1047 bp
atgactgcgagacttgcgaccaagttgtcgctcaaggacggagaagaaccgattgacttggggaatctcagggttccggggaagcagtttttggctcgaaaattctatttggttgggaggcttaacacttgtagggggttggtgctggattcattctggagtgctgtaagatcgatgtggacgttgtctggtactgtggaggtccaaccacgaggtgaacgttttctgtttacgttcacccatgaaaaggatggtgctcgagtgaagaagggtggtccgtggggttttcaacgtgccatgattctcctgaatgattatgatggcttctcgaagctctcttccgtgaagctggactttgtttggatttggccctgcgtagaggagatgctcgagtccgacttgtcctctatccatgatccggtgcactttgatcggcgggttggggtttctcctgttgatgttctaaccctaaggttcaggtatgaaaggtttctagggcgctgtcactcatgtgctttgttgaatcatgggggacagcgctgccctagggtggaggcctcggagaatgatgctgtggaaggggagggatcgcagctaggaatgggatcgatcgttccagccctagtttttagggccaacgttcagccatctatttcttcaccgttgttttcttccttcaaggtcccaaagctgaagaggaaggttgtgcagatccgtgaacttccagcactagatgctcccgggactgagggtactttgattcaagctccggtggtggggatccgtcgtcccagagctaaggatggccctgacgctggtaagagtgccaaacacagtttggacttggttccgggctggtctccaaccccgaaggtgtacaagaagaagggcaggcctcgtggctcccgcaataaggtcaaagtgacatcggcggcgtcctctagagacggttctgagtctatggcgtcggggtcccctgatggtggagctcctggtgtgaagggaaaggcggttgggctggcagtgcccgtctcccaatctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

348

Amino Acids

37.88

Weight (kDa)

9.9

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AciI CCGC 4 cut(s) 436, 907, 932, 1010
AclI AACGTT 2 cut(s) 220, 639
AclWI GGATC 6 cut(s) 410, 595, 613, 706, 775, 788
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 2 cut(s) 935, 965
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 3 cut(s) 193, 754, 878
AfeI AGCGCT 1 cut(s) 539
AfiI CCNNNNNNNGG 8 cut(s) 247, 418, 550, 776, 815, 913, 983, 1041
AgsI TTSAA 4 cut(s) 290, 523, 679, 764
AjnI CCWGG 1 cut(s) 991
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AleI CACNNNNGTG 1 cut(s) 510
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 7 cut(s) 334, 349, 595, 691, 767, 797, 989
AluI AGCT 7 cut(s) 334, 349, 595, 691, 767, 797, 989
Alw21I GWGCWC 3 cut(s) 259, 426, 991
Alw26I GTCTC 4 cut(s) 4, 864, 939, 1036
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 6 cut(s) 410, 595, 613, 706, 775, 788
Ama87I CYCGRG 3 cut(s) 258, 389, 740
Aor51HI AGCGCT 1 cut(s) 539
AoxI GGCC 5 cut(s) 368, 555, 633, 805, 893
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 540, 592
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 2 cut(s) 222, 489
AspA2I CCTAGG 1 cut(s) 545
AspLEI GCGC 2 cut(s) 501, 540
AspS9I GGNCC 7 cut(s) 202, 275, 369, 633, 682, 806, 972
AsuC2I CCSGG 4 cut(s) 78, 741, 742, 852
AsuHPI GGTGA 3 cut(s) 227, 229, 651
AvaI CYCGRG 3 cut(s) 258, 389, 740
AvaII GGWCC 4 cut(s) 202, 275, 682, 972
AvrII CCTAGG 1 cut(s) 545
AxyI CCTNAGG 1 cut(s) 470
BaeGI GKGCMC 2 cut(s) 426, 1029
BamHI GGATCC 1 cut(s) 780
BanII GRGCYC 1 cut(s) 991
BauI CACGAG 2 cut(s) 210, 897
Bbv12I GWGCWC 3 cut(s) 259, 426, 991
BbvI GCAGC 2 cut(s) 527, 604
BccI CCATC 5 cut(s) 245, 314, 655, 797, 974
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 1 cut(s) 993
BcnI CCSGG 4 cut(s) 78, 741, 742, 852
BcoDI GTCTC 4 cut(s) 4, 864, 939, 1036
BfaI CTAG 6 cut(s) 494, 546, 596, 623, 731, 942
BfoI RGCGCY 2 cut(s) 502, 541
BisI GCNGC 3 cut(s) 541, 593, 933
BlnI CCTAGG 1 cut(s) 545
BlsI GCNGC 3 cut(s) 542, 594, 934
Bme1390I CCNGG 5 cut(s) 78, 741, 742, 852, 993
Bme18I GGWCC 4 cut(s) 202, 275, 682, 972
BmeT110I CYCGRG 3 cut(s) 258, 389, 740
BmgT120I GGNCC 7 cut(s) 202, 275, 369, 633, 682, 806, 972
BmiI GGNNCC 7 cut(s) 75, 684, 782, 849, 904, 973, 974
BmrFI CCNGG 5 cut(s) 78, 741, 742, 852, 993
BmsI GCATC 3 cut(s) 375, 559, 724
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 4 cut(s) 78, 741, 742, 852
Bsa29I ATCGAT 2 cut(s) 173, 608
BsaHI GRCGYC 2 cut(s) 935, 965
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 77, 278, 545, 558, 740
BsaWI WCCGGW 2 cut(s) 418, 769
Bsc4I CCNNNNNNNGG 8 cut(s) 247, 418, 550, 776, 815, 913, 983, 1041
Bse21I CCTNAGG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 993
BseCI ATCGAT 2 cut(s) 173, 608
BseDI CCNNGG 5 cut(s) 77, 278, 545, 558, 740
BseGI GGATG 2 cut(s) 256, 808
BseLI CCNNNNNNNGG 8 cut(s) 247, 418, 550, 776, 815, 913, 983, 1041
BseMII CTCAG 3 cut(s) 82, 738, 945
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 2 cut(s) 426, 1029
BseXI GCAGC 2 cut(s) 527, 604
BsgI GTGCAG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 5 cut(s) 370, 557, 635, 807, 895
BshVI ATCGAT 2 cut(s) 173, 608
BsiEI CGRYCG 1 cut(s) 612
BsiHKAI GWGCWC 3 cut(s) 259, 426, 991
BsiHKCI CYCGRG 3 cut(s) 258, 389, 740
BsiSI CCGG 5 cut(s) 77, 419, 741, 770, 851
BslFI GGGAC 5 cut(s) 546, 668, 757, 774, 958
BslI CCNNNNNNNGG 8 cut(s) 247, 418, 550, 776, 815, 913, 983, 1041
BsmAI GTCTC 4 cut(s) 4, 864, 939, 1036
BsmBI CGTCTC 2 cut(s) 939, 1036
BsmFI GGGAC 5 cut(s) 546, 668, 757, 774, 958
BsnI GGCC 5 cut(s) 370, 557, 635, 807, 895
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 3 cut(s) 258, 389, 740
Bsp1286I GDGCHC 4 cut(s) 259, 426, 991, 1029
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
BspACI CCGC 4 cut(s) 436, 907, 932, 1010
BspANI GGCC 5 cut(s) 370, 557, 635, 807, 895
BspCNI CTCAG 3 cut(s) 81, 739, 946
BspDI ATCGAT 2 cut(s) 173, 608
BspLI GGNNCC 7 cut(s) 75, 684, 782, 849, 904, 973, 974
BspPI GGATC 6 cut(s) 410, 595, 613, 706, 775, 788
BspTNI GGTCTC 1 cut(s) 864
BsrGI TGTACA 1 cut(s) 876
BssECI CCNNGG 5 cut(s) 77, 278, 545, 558, 740
BssMI GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
BssNI GRCGYC 2 cut(s) 935, 965
BssSI CACGAG 2 cut(s) 210, 897
BssT1I CCWWGG 1 cut(s) 545
Bst2BI CACGAG 2 cut(s) 210, 897
Bst2UI CCWGG 1 cut(s) 993
Bst4CI ACNGT 4 cut(s) 196, 663, 836, 950
Bst6I CTCTTC 2 cut(s) 343, 689
BstACI GRCGYC 2 cut(s) 935, 965
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 2 cut(s) 893, 1020
BstDEI CTNAG 5 cut(s) 68, 470, 747, 798, 954
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 256, 808
BstH2I RGCGCY 2 cut(s) 502, 541
BstHHI GCGC 2 cut(s) 501, 540
BstKTI GATC 8 cut(s) 173, 418, 433, 590, 608, 612, 714, 783
BstMAI GTCTC 4 cut(s) 4, 864, 939, 1036
BstMBI GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 3 cut(s) 14, 734, 1024
BstNI CCWGG 1 cut(s) 993
BstSCI CCNGG 5 cut(s) 76, 739, 740, 850, 991
BstSLI GKGCMC 2 cut(s) 426, 1029
BstV1I GCAGC 2 cut(s) 527, 604
BstX2I RGATCY 2 cut(s) 711, 780
BstYI RGATCY 2 cut(s) 711, 780
Bsu15I ATCGAT 2 cut(s) 173, 608
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 5 cut(s) 370, 557, 635, 807, 895
BsuTUI ATCGAT 2 cut(s) 173, 608
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 2 cut(s) 256, 808
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 1 cut(s) 1029
Cac8I GCNNGC 2 cut(s) 893, 1020
CfoI GCGC 2 cut(s) 501, 540
Cfr13I GGNCC 7 cut(s) 202, 275, 369, 633, 682, 806, 972
Cfr9I CCCGGG 1 cut(s) 740
ClaI ATCGAT 2 cut(s) 173, 608
CseI GACGC 3 cut(s) 821, 924, 954
Csp6I GTAC 3 cut(s) 192, 753, 877
CviAII CATG 5 cut(s) 242, 298, 413, 510, 527
CviQI GTAC 3 cut(s) 192, 753, 877
DdeI CTNAG 5 cut(s) 68, 470, 747, 798, 954
DpnI GATC 8 cut(s) 172, 417, 432, 589, 607, 611, 713, 782
DpnII GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
DraIII CACNNNGTG 1 cut(s) 215
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 343, 689
EarI CTCTTC 2 cut(s) 343, 689
Ecl136II GAGCTC 1 cut(s) 989
Eco130I CCWWGG 1 cut(s) 545
Eco147I AGGCCT 2 cut(s) 557, 895
Eco24I GRGCYC 1 cut(s) 991
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 4 cut(s) 202, 275, 682, 972
Eco47III AGCGCT 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 989
Eco57I CTGAAG 1 cut(s) 713
Eco81I CCTNAGG 1 cut(s) 470
Eco88I CYCGRG 3 cut(s) 258, 389, 740
EcoICRI GAGCTC 1 cut(s) 989
EcoO109I RGGNCCY 2 cut(s) 682, 972
EcoRII CCWGG 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 545
Esp3I CGTCTC 2 cut(s) 939, 1036
FaeI CATG 5 cut(s) 245, 301, 416, 513, 530
FaiI YATR 8 cut(s) 243, 299, 318, 414, 483, 511, 528, 962
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 5 cut(s) 546, 668, 757, 774, 958
FatI CATG 5 cut(s) 241, 297, 412, 509, 526
FauI CCCGC 2 cut(s) 429, 914
Fnu4HI GCNGC 3 cut(s) 541, 593, 933
FokI GGATG 2 cut(s) 263, 815
FriOI GRGCYC 1 cut(s) 991
Fsp4HI GCNGC 3 cut(s) 541, 593, 933
FspBI CTAG 6 cut(s) 494, 546, 596, 623, 731, 942
GlaI GCGC 2 cut(s) 500, 539
GluI GCNGC 3 cut(s) 541, 593, 933
GsuI CTGGAG 1 cut(s) 178
HaeII RGCGCY 2 cut(s) 502, 541
HaeIII GGCC 5 cut(s) 370, 557, 635, 807, 895
HapII CCGG 5 cut(s) 77, 419, 741, 770, 851
HgaI GACGC 3 cut(s) 821, 924, 954
HhaI GCGC 2 cut(s) 501, 540
Hin1I GRCGYC 2 cut(s) 935, 965
Hin1II CATG 5 cut(s) 245, 301, 416, 513, 530
Hin6I GCGC 2 cut(s) 499, 538
HinP1I GCGC 2 cut(s) 499, 538
HinfI GANTC 7 cut(s) 64, 149, 301, 392, 523, 760, 956
HpaII CCGG 5 cut(s) 77, 419, 741, 770, 851
HphI GGTGA 3 cut(s) 227, 229, 651
Hpy166II GTNNAC 7 cut(s) 180, 218, 231, 237, 424, 719, 877
Hpy188I TCNGA 3 cut(s) 397, 562, 955
Hpy188III TCNNGA 4 cut(s) 157, 307, 328, 942
Hpy8I GTNNAC 7 cut(s) 180, 218, 231, 237, 424, 719, 877
Hpy99I CGWCG 2 cut(s) 789, 970
HpyAV CCTTC 7 cut(s) 262, 572, 685, 694, 865, 880, 994
HpyCH4III ACNGT 4 cut(s) 196, 663, 836, 950
HpyCH4IV ACGT 5 cut(s) 182, 220, 233, 292, 639
HpyCH4V TGCA 2 cut(s) 424, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 734, 1024
HpyF3I CTNAG 5 cut(s) 68, 470, 747, 798, 954
HpySE526I ACGT 5 cut(s) 182, 220, 233, 292, 639
Hsp92I GRCGYC 2 cut(s) 935, 965
Hsp92II CATG 5 cut(s) 245, 301, 416, 513, 530
HspAI GCGC 2 cut(s) 499, 538
KflI GGGWCCC 1 cut(s) 972
Kzo9I GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
LmnI GCTCC 5 cut(s) 742, 772, 908, 986, 994
Lsp1109I GCAGC 2 cut(s) 527, 604
LweI GCATC 3 cut(s) 375, 559, 724
MaeI CTAG 6 cut(s) 494, 546, 596, 623, 731, 942
MaeII ACGT 5 cut(s) 182, 220, 233, 292, 639
MaeIII GTNAC 2 cut(s) 503, 922
MalI GATC 8 cut(s) 172, 417, 432, 589, 607, 611, 713, 782
MboI GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
MboII GAAGA 7 cut(s) 56, 277, 330, 648, 663, 706, 895
MflI RGATCY 2 cut(s) 711, 780
MhlI GDGCHC 4 cut(s) 259, 426, 991, 1029
MluCI AATT 1 cut(s) 101
MlyI GAGTC 2 cut(s) 401, 965
MmeI TCCRAC 3 cut(s) 229, 420, 887
MroXI GAANNNNTTC 2 cut(s) 222, 489
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 5 cut(s) 77, 419, 741, 770, 851
MspR9I CCNGG 5 cut(s) 78, 741, 742, 852, 993
MvaI CCWGG 1 cut(s) 993
MwoI GCNNNNNNNGC 3 cut(s) 14, 734, 1024
NciI CCSGG 4 cut(s) 78, 741, 742, 852
NdeII GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
NlaIII CATG 5 cut(s) 245, 301, 416, 513, 530
NlaIV GGNNCC 7 cut(s) 75, 684, 782, 849, 904, 973, 974
NmuCI GTSAC 2 cut(s) 503, 922
OliI CACNNNNGTG 1 cut(s) 510
PaeR7I CTCGAG 2 cut(s) 258, 389
PceI AGGCCT 2 cut(s) 557, 895
PcsI WCGNNNNNNNCGW 2 cut(s) 179, 217
PdmI GAANNNNTTC 2 cut(s) 222, 489
PfeI GAWTC 5 cut(s) 64, 149, 301, 523, 760
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 542, 594, 934
Ple19I CGATCG 1 cut(s) 612
PleI GAGTC 2 cut(s) 400, 964
PpsI GAGTC 2 cut(s) 400, 964
PpuMI RGGWCCY 2 cut(s) 682, 972
Psp124BI GAGCTC 1 cut(s) 991
Psp1406I AACGTT 2 cut(s) 220, 639
Psp5II RGGWCCY 2 cut(s) 682, 972
Psp6I CCWGG 1 cut(s) 991
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 7 cut(s) 75, 684, 782, 849, 904, 973, 974
PspPI GGNCC 7 cut(s) 202, 275, 369, 633, 682, 806, 972
PspPPI RGGWCCY 2 cut(s) 682, 972
PspXI VCTCGAGB 2 cut(s) 258, 389
PsuI RGATCY 2 cut(s) 711, 780
PsyI GACNNNGTC 1 cut(s) 184
PvuI CGATCG 1 cut(s) 612
RsaI GTAC 3 cut(s) 193, 754, 878
RsaNI GTAC 3 cut(s) 192, 753, 877
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 991
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 541, 593, 933
Sau3AI GATC 8 cut(s) 170, 415, 430, 587, 605, 609, 711, 780
Sau96I GGNCC 7 cut(s) 202, 275, 369, 633, 682, 806, 972
SchI GAGTC 2 cut(s) 401, 965
ScrFI CCNGG 5 cut(s) 78, 741, 742, 852, 993
SduI GDGCHC 4 cut(s) 259, 426, 991, 1029
SfaNI GCATC 3 cut(s) 375, 559, 724
Sfr274I CTCGAG 2 cut(s) 258, 389
SinI GGWCC 4 cut(s) 202, 275, 682, 972
SlaI CTCGAG 2 cut(s) 258, 389
SmaI CCCGGG 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 3 cut(s) 32, 258, 389
SmoI CTYRAG 3 cut(s) 32, 258, 389
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 2 cut(s) 557, 895
SsiI CCGC 4 cut(s) 436, 907, 932, 1010
SspMI CTAG 6 cut(s) 494, 546, 596, 623, 731, 942
SstI GAGCTC 1 cut(s) 991
StuI AGGCCT 2 cut(s) 557, 895
StyD4I CCNGG 5 cut(s) 76, 739, 740, 850, 991
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 4 cut(s) 196, 663, 836, 950
TaiI ACGT 5 cut(s) 185, 223, 236, 295, 642
TaqI TCGA 6 cut(s) 97, 173, 259, 329, 390, 608
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 876
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 5 cut(s) 64, 149, 301, 523, 760
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 1029
TseFI GTSAC 2 cut(s) 503, 922
TseI GCWGC 2 cut(s) 540, 592
Tsp45I GTSAC 2 cut(s) 503, 922
TspDTI ATGAA 3 cut(s) 141, 258, 498
TspGWI ACGGA 5 cut(s) 54, 267, 331, 704, 773
TspMI CCCGGG 1 cut(s) 740
TspRI CASTG 1 cut(s) 1029
Tth111I GACNNNGTC 1 cut(s) 184
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 4 cut(s) 202, 275, 682, 972
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 2 cut(s) 248, 835
XhoI CTCGAG 2 cut(s) 258, 389
XmaI CCCGGG 1 cut(s) 740
XmaJI CCTAGG 1 cut(s) 545
XmnI GAANNNNTTC 2 cut(s) 222, 489
XspI CTAG 6 cut(s) 494, 546, 596, 623, 731, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.