Rmu_sc0029678.1_g000002

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029678.1
Physical Location & Seq
Reverse (-)
1492 .. 2590
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029678.1_g000002.1.cds

Sequence Viewer

Length: 795 bp
atggccactgtgattgcttccatgactgctagacttgcgactaggttgtcgctcaaggatggcgaagagccagtggacctaggcaaccttcggaaccaggggaaagaattcttggctaggaacttttacctagttgggtggttgaacagtagccgtgcggttcaacctcttgttgattgcttcttgtttacgttcactcatgaacgtgatattgccagagtgaagaagggtggaccttggcgctttcagcgtgccatggtgcttctcaatgactacgacgacttctcagacatatctgctgtcaagttagactttttgtggatttgggtggaggtgcaaggtctacctcccggaatcttgactgaaccaatgattaggcaatgtgcaatgattaatcatggaggagagagatgcctcgtagagatggaagaagaagcggcgtcgattgaaggcgcgggtcagcctcagacggcggggccttctatcccagcccttgtttttagggccaatgctcaaactatggtgcctccttccgtttttccagctttcaaattacctaatttgttgaaaaagaggactatgcagatccggtccttatcggaggaagtggatgagtccacgaagagttaccgaaccaagcatagtctggctttggttccggtcgggttacagccggagaacctcggcttcgaagtatcttctgaggggctgtatgaagtgtccatcacctcggatctaaagatgtacaagaaacggggcaggccccgtgggaagaggaacgcgactaagccttag

Protein Analysis

264

Amino Acids

29.56

Weight (kDa)

8.94

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 343
AccII CGCG 2 cut(s) 455, 782
AciI CCGC 4 cut(s) 158, 437, 455, 473
AclWI GGATC 2 cut(s) 580, 741
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 1 cut(s) 746
AgsI TTSAA 5 cut(s) 145, 164, 449, 550, 568
AjnI CCWGG 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 545
AluI AGCT 1 cut(s) 545
AlwI GGATC 2 cut(s) 580, 741
AoxI GGCC 4 cut(s) 3, 476, 504, 761
ApoI RAATTY 1 cut(s) 107
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 107
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 2 cut(s) 243, 455
AspS9I GGNCC 6 cut(s) 76, 233, 476, 504, 591, 762
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 718
AsuII TTCGAA 1 cut(s) 690
AvaII GGWCC 3 cut(s) 76, 233, 591
AvrII CCTAGG 1 cut(s) 79
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 523
BccI CCATC 3 cut(s) 53, 418, 731
BceAI ACGGC 2 cut(s) 138, 486
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 351
BfaI CTAG 5 cut(s) 30, 42, 80, 117, 131
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 1 cut(s) 438
BlnI CCTAGG 1 cut(s) 79
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 2 cut(s) 98, 351
Bme18I GGWCC 3 cut(s) 76, 233, 591
BmgT120I GGNCC 6 cut(s) 76, 233, 476, 504, 591, 762
BmiI GGNNCC 5 cut(s) 95, 477, 525, 657, 764
BmrFI CCNGG 2 cut(s) 98, 351
BmsI GCATC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 7 cut(s) 79, 97, 236, 255, 682, 729, 766
BsaWI WCCGGW 2 cut(s) 588, 658
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 2 cut(s) 386, 393
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 7 cut(s) 79, 97, 236, 255, 682, 729, 766
BseGI GGATG 2 cut(s) 64, 616
BseMI GCAATG 2 cut(s) 386, 393
BseMII CTCAG 3 cut(s) 300, 479, 693
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 455, 782
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 4 cut(s) 5, 478, 506, 763
BshNI GGYRCC 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 663
BsiSI CCGG 4 cut(s) 351, 589, 659, 674
BsnI GGCC 4 cut(s) 5, 478, 506, 763
Bsp119I TTCGAA 1 cut(s) 690
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 2 cut(s) 585, 733
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 4 cut(s) 158, 437, 455, 473
BspANI GGCC 4 cut(s) 5, 478, 506, 763
BspCNI CTCAG 3 cut(s) 299, 478, 694
BspFNI CGCG 2 cut(s) 455, 782
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 5 cut(s) 95, 477, 525, 657, 764
BspPI GGATC 2 cut(s) 580, 741
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 690
BspT107I GGYRCC 1 cut(s) 523
BsrDI GCAATG 2 cut(s) 386, 393
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 7 cut(s) 79, 97, 236, 255, 682, 729, 766
BssMI GATC 2 cut(s) 585, 733
BssNI GRCGYC 1 cut(s) 440
BssT1I CCWWGG 3 cut(s) 79, 236, 255
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 10, 149
Bst6I CTCTTC 3 cut(s) 60, 617, 767
BstACI GRCGYC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 744
BstBI TTCGAA 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 252, 761
BstDEI CTNAG 5 cut(s) 286, 465, 702, 786, 792
BstDSI CCRYGG 2 cut(s) 255, 766
BstF5I GGATG 2 cut(s) 64, 616
BstFNI CGCG 2 cut(s) 455, 782
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 455
BstKTI GATC 2 cut(s) 588, 736
BstMBI GATC 2 cut(s) 585, 733
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 2 cut(s) 35, 247
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 96, 349
BstUI CGCG 2 cut(s) 455, 782
BstX2I RGATCY 2 cut(s) 585, 733
BstYI RGATCY 2 cut(s) 585, 733
BsuRI GGCC 4 cut(s) 5, 478, 506, 763
BtgI CCRYGG 2 cut(s) 255, 766
BtsCI GGATG 2 cut(s) 64, 616
BtsIMutI CAGTG 2 cut(s) 6, 78
Cac8I GCNNGC 2 cut(s) 252, 761
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 243, 455
Cfr13I GGNCC 6 cut(s) 76, 233, 476, 504, 591, 762
CseI GACGC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 745
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 4 cut(s) 22, 200, 256, 398
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 5 cut(s) 286, 465, 702, 786, 792
DpnI GATC 2 cut(s) 587, 735
DpnII GATC 2 cut(s) 585, 733
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 60, 617, 767
EarI CTCTTC 3 cut(s) 60, 617, 767
Eco130I CCWWGG 3 cut(s) 79, 236, 255
Eco47I GGWCC 3 cut(s) 76, 233, 591
EcoO109I RGGNCCY 2 cut(s) 476, 762
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 3 cut(s) 79, 236, 255
ErhI CCWWGG 3 cut(s) 79, 236, 255
FaeI CATG 4 cut(s) 25, 203, 259, 401
FaiI YATR 9 cut(s) 23, 201, 257, 293, 399, 521, 581, 642, 714
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FatI CATG 4 cut(s) 21, 199, 255, 397
FauI CCCGC 2 cut(s) 448, 466
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 2 cut(s) 71, 623
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 5 cut(s) 30, 42, 80, 117, 131
GlaI GCGC 2 cut(s) 242, 454
GluI GCNGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 4 cut(s) 5, 478, 506, 763
HapII CCGG 4 cut(s) 351, 589, 659, 674
HgaI GACGC 1 cut(s) 429
HhaI GCGC 2 cut(s) 243, 455
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 4 cut(s) 25, 203, 259, 401
Hin6I GCGC 2 cut(s) 241, 453
HinP1I GCGC 2 cut(s) 241, 453
HinfI GANTC 2 cut(s) 354, 614
HpaII CCGG 4 cut(s) 351, 589, 659, 674
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 6 cut(s) 76, 189, 195, 233, 344, 618
Hpy188I TCNGA 6 cut(s) 93, 289, 468, 601, 703, 733
Hpy188III TCNNGA 2 cut(s) 200, 358
Hpy8I GTNNAC 6 cut(s) 76, 189, 195, 233, 344, 618
Hpy99I CGWCG 2 cut(s) 281, 445
HpyAV CCTTC 5 cut(s) 98, 220, 443, 489, 540
HpyCH4III ACNGT 2 cut(s) 10, 149
HpyCH4IV ACGT 2 cut(s) 191, 205
HpyCH4V TGCA 3 cut(s) 337, 386, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 247
HpyF3I CTNAG 5 cut(s) 286, 465, 702, 786, 792
HpySE526I ACGT 2 cut(s) 191, 205
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 4 cut(s) 25, 203, 259, 401
HspAI GCGC 2 cut(s) 241, 453
Kzo9I GATC 2 cut(s) 585, 733
LguI GCTCTTC 1 cut(s) 60
LweI GCATC 1 cut(s) 401
MaeI CTAG 5 cut(s) 30, 42, 80, 117, 131
MaeII ACGT 2 cut(s) 191, 205
MaeIII GTNAC 2 cut(s) 626, 666
MalI GATC 2 cut(s) 587, 735
MboI GATC 2 cut(s) 585, 733
MboII GAAGA 7 cut(s) 77, 235, 440, 443, 634, 690, 784
MflI RGATCY 2 cut(s) 585, 733
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 107, 551, 559
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 623
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 351, 589, 659, 674
MspR9I CCNGG 2 cut(s) 98, 351
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 2 cut(s) 455, 782
MwoI GCNNNNNNNGC 2 cut(s) 35, 247
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 585, 733
NlaIII CATG 4 cut(s) 25, 203, 259, 401
NlaIV GGNNCC 5 cut(s) 95, 477, 525, 657, 764
NmeAIII GCCGAG 1 cut(s) 663
NspV TTCGAA 1 cut(s) 690
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 5 cut(s) 95, 477, 525, 657, 764
PspPI GGNCC 6 cut(s) 76, 233, 476, 504, 591, 762
PsuI RGATCY 2 cut(s) 585, 733
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 585, 733
Sau96I GGNCC 6 cut(s) 76, 233, 476, 504, 591, 762
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 98, 351
SfaNI GCATC 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 690
SinI GGWCC 3 cut(s) 76, 233, 591
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 107, 551, 559
SsiI CCGC 4 cut(s) 158, 437, 455, 473
SspMI CTAG 5 cut(s) 30, 42, 80, 117, 131
StyD4I CCNGG 2 cut(s) 96, 349
StyI CCWWGG 3 cut(s) 79, 236, 255
TaaI ACNGT 2 cut(s) 10, 149
TaiI ACGT 2 cut(s) 194, 208
TaqI TCGA 2 cut(s) 443, 690
TasI AATT 3 cut(s) 107, 551, 559
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 13, 78
TspDTI ATGAA 2 cut(s) 216, 729
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 2 cut(s) 13, 78
VpaK11BI GGWCC 3 cut(s) 76, 233, 591
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmaJI CCTAGG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 5 cut(s) 30, 42, 80, 117, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.