Rmu_sc0005026.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005026.1
OG0000172
Physical Location & Seq
Reverse (-)
18624 .. 19838
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005026.1_g000005.1.cds

Sequence Viewer

Length: 1146 bp
atggcagcagctattgcttccatgacagccaggctagcgaccaagttgtcgctcagagagggtgaggaaccggttgacctgggaaatcttagggttccggggaaggaatttctcgctcgccgtttctacttggtggggaaactcaacacttgtagggcggtggttttggattcttttaggagcgcggtccgttcaatgtggagattgacggggactgtggaggttcaaccacgcggggaccgttttctgtttacgttcactcttgaacgtgatgtcgcccgggtgaagaagggaggcccttggagttttcagagggctatgcttttgttgaatgactacgatggcttttcagtgattgatgcggtgaagcttgacttcgtttggatctgggttgggatccatggccttccaccgggtatcttgacggaacccactgtccggctggtgggcggaacaatcggtgaggtcttggaggttgatcaaccggctatccgacgtggtgatgctcgggttcggattactttggccatcaatgatctggtgcgtttggatcgtcgtgttagggtttcgcccactgatgttctcactttgaggtttcagtatgagaggttattgggaaggtgccgactgtgtactttcttgaaccacggaggacagaggtgttcaagggaggaggtggaggcgactgactctgtggtggacgatggttcgcagcaggttccgaggctggctcttccaggacttgtgtttagggctaattcccagccatctctttccttgccttcgaatttcaaggtcccaactctgttgaagaagaaaccagtgcagattcgtcctctcccggaggtggaatcttcgcttgggtctgaagatacctcggctcttgaccctgtggttggaatgcgtcgccctagggaagaggaggatgaggagggtggaaaacgagctaaacatagcctagctttggtaacgtcgcctcccaaagtgtacaagaagaagggcaggcctcgaggacatagaaataaggtcaagaaggtgatgtctatgagtgagggttcggggtccatggtcattcctgaggatggcgttggtagtgctcctggacttgagggagcgccgactcctccagactccagcgctgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

381

Amino Acids

41.98

Weight (kDa)

9.76

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AbsI CCTCGAGG 1 cut(s) 1008
Acc36I ACCTGC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 621
AccII CGCG 2 cut(s) 185, 234
AciI CCGC 5 cut(s) 158, 185, 234, 362, 450
AclWI GGATC 4 cut(s) 391, 392, 404, 558
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 107, 787
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 2 cut(s) 634, 989
AfeI AGCGCT 1 cut(s) 1138
AfiI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 847, 896, 964, 1082
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 8 cut(s) 195, 227, 266, 331, 643, 666, 793, 811
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 4 cut(s) 29, 78, 736, 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 11, 370, 947, 962
AluI AGCT 4 cut(s) 11, 370, 947, 962
Alw21I GWGCWC 1 cut(s) 1099
AlwI GGATC 4 cut(s) 391, 392, 404, 558
Ama87I CYCGRG 3 cut(s) 279, 507, 1008
Aor51HI AGCGCT 1 cut(s) 1138
AoxI GGCC 4 cut(s) 295, 403, 525, 1004
ApeKI GCWGC 3 cut(s) 5, 8, 712
ApoI RAATTY 2 cut(s) 107, 787
AsiGI ACCGGT 1 cut(s) 70
AspA2I CCTAGG 1 cut(s) 911
AspLEI GCGC 3 cut(s) 185, 1117, 1139
AspS9I GGNCC 5 cut(s) 187, 238, 296, 796, 1062
AsuC2I CCSGG 5 cut(s) 99, 280, 281, 414, 842
AsuHPI GGTGA 6 cut(s) 74, 295, 376, 473, 512, 1048
AsuII TTCGAA 1 cut(s) 785
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 3 cut(s) 279, 507, 1008
AvaII GGWCC 4 cut(s) 187, 238, 796, 1062
AvrII CCTAGG 1 cut(s) 911
AxyI CCTNAGG 1 cut(s) 1077
BalI TGGCCA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 3 cut(s) 17, 20, 724
BccI CCATC 5 cut(s) 335, 536, 698, 775, 1076
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 4 cut(s) 31, 80, 738, 1101
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 5 cut(s) 99, 280, 281, 414, 842
BfaI CTAG 3 cut(s) 35, 912, 959
BfoI RGCGCY 2 cut(s) 1118, 1140
BfuAI ACCTGC 1 cut(s) 706
BisI GCNGC 3 cut(s) 6, 9, 713
BlnI CCTAGG 1 cut(s) 911
BlsI GCNGC 3 cut(s) 7, 10, 714
Bme1390I CCNGG 9 cut(s) 31, 80, 99, 280, 281, 414, 738, 842, 1101
Bme18I GGWCC 4 cut(s) 187, 238, 796, 1062
BmeT110I CYCGRG 3 cut(s) 279, 507, 1008
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 5 cut(s) 187, 238, 296, 796, 1062
BmiI GGNNCC 9 cut(s) 69, 96, 239, 398, 429, 623, 720, 798, 1063
BmrFI CCNGG 9 cut(s) 31, 80, 99, 280, 281, 414, 738, 842, 1101
BmsI GCATC 2 cut(s) 349, 493
BmtI GCTAGC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 715, 747
BpmI CTGGAG 2 cut(s) 1110, 1117
Bpu14I TTCGAA 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 5 cut(s) 99, 280, 281, 414, 842
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 7 cut(s) 412, 438, 445, 847, 896, 964, 1082
Bse118I RCCGGY 2 cut(s) 70, 484
Bse1I ACTGG 1 cut(s) 821
Bse21I CCTNAGG 1 cut(s) 1077
BseBI CCWGG 4 cut(s) 31, 80, 738, 1101
BseGI GGATG 2 cut(s) 931, 1087
BseLI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 847, 896, 964, 1082
BseMII CTCAG 2 cut(s) 67, 1068
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 4 cut(s) 686, 935, 944, 1113
BseXI GCAGC 3 cut(s) 17, 20, 724
BseYI CCCAGC 1 cut(s) 762
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 2 cut(s) 185, 234
BshFI GGCC 4 cut(s) 297, 405, 527, 1006
BshNI GGYRCC 1 cut(s) 621
BshTI ACCGGT 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 1099
BsiHKCI CYCGRG 3 cut(s) 279, 507, 1008
BsiSI CCGG 7 cut(s) 71, 98, 280, 413, 439, 485, 842
BslFI GGGAC 3 cut(s) 226, 251, 782
BslI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 847, 896, 964, 1082
BsmFI GGGAC 3 cut(s) 226, 251, 782
BsmI GAATGC 1 cut(s) 906
BsnI GGCC 4 cut(s) 297, 405, 527, 1006
BsoBI CYCGRG 3 cut(s) 279, 507, 1008
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 1099
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 5 cut(s) 384, 396, 478, 535, 550
Bsp19I CCATGG 2 cut(s) 400, 1065
BspACI CCGC 5 cut(s) 158, 185, 234, 362, 450
BspANI GGCC 4 cut(s) 297, 405, 527, 1006
BspCNI CTCAG 2 cut(s) 66, 1069
BspFNI CGCG 2 cut(s) 185, 234
BspLI GGNNCC 9 cut(s) 69, 96, 239, 398, 429, 623, 720, 798, 1063
BspMI ACCTGC 1 cut(s) 706
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 391, 392, 404, 558
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 785
BspT107I GGYRCC 1 cut(s) 621
BsrFI RCCGGY 2 cut(s) 70, 484
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 1 cut(s) 821
BssAI RCCGGY 2 cut(s) 70, 484
BssMI GATC 5 cut(s) 384, 396, 478, 535, 550
BssT1I CCWWGG 4 cut(s) 299, 400, 911, 1065
Bst2UI CCWGG 4 cut(s) 31, 80, 738, 1101
Bst4CI ACNGT 4 cut(s) 217, 242, 436, 630
Bst6I CTCTTC 2 cut(s) 738, 912
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 987
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 4 cut(s) 36, 118, 729, 1004
BstDEI CTNAG 3 cut(s) 53, 89, 1077
BstDSI CCRYGG 3 cut(s) 400, 646, 1065
BstF5I GGATG 2 cut(s) 931, 1087
BstFNI CGCG 2 cut(s) 185, 234
BstH2I RGCGCY 2 cut(s) 1118, 1140
BstHHI GCGC 3 cut(s) 185, 1117, 1139
BstKTI GATC 5 cut(s) 387, 399, 481, 538, 553
BstMBI GATC 5 cut(s) 384, 396, 478, 535, 550
BstMWI GCNNNNNNNGC 2 cut(s) 14, 35
BstNI CCWGG 4 cut(s) 31, 80, 738, 1101
BstSCI CCNGG 9 cut(s) 29, 78, 97, 278, 279, 412, 736, 840, 1099
BstUI CGCG 2 cut(s) 185, 234
BstV1I GCAGC 3 cut(s) 17, 20, 724
BstX2I RGATCY 2 cut(s) 384, 396
BstYI RGATCY 2 cut(s) 384, 396
Bsu36I CCTNAGG 1 cut(s) 1077
BsuRI GGCC 4 cut(s) 297, 405, 527, 1006
BtgI CCRYGG 3 cut(s) 400, 646, 1065
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 2 cut(s) 931, 1087
BtsIMutI CAGTG 4 cut(s) 357, 432, 573, 828
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 4 cut(s) 36, 118, 729, 1004
CfoI GCGC 3 cut(s) 185, 1117, 1139
Cfr10I RCCGGY 2 cut(s) 70, 484
Cfr13I GGNCC 5 cut(s) 187, 238, 296, 796, 1062
Cfr9I CCCGGG 1 cut(s) 279
CpoI CGGWCCG 1 cut(s) 187
CseI GACGC 1 cut(s) 893
Csp6I GTAC 2 cut(s) 633, 988
CspAI ACCGGT 1 cut(s) 70
CspI CGGWCCG 1 cut(s) 187
CviAII CATG 3 cut(s) 22, 401, 1066
CviQI GTAC 2 cut(s) 633, 988
DdeI CTNAG 3 cut(s) 53, 89, 1077
DpnI GATC 5 cut(s) 386, 398, 480, 537, 552
DpnII GATC 5 cut(s) 384, 396, 478, 535, 550
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 738, 912
EarI CTCTTC 2 cut(s) 738, 912
EciI GGCGGA 1 cut(s) 465
Eco130I CCWWGG 4 cut(s) 299, 400, 911, 1065
Eco147I AGGCCT 1 cut(s) 1006
Eco47I GGWCC 4 cut(s) 187, 238, 796, 1062
Eco47III AGCGCT 1 cut(s) 1138
Eco57I CTGAAG 1 cut(s) 888
Eco81I CCTNAGG 1 cut(s) 1077
Eco88I CYCGRG 3 cut(s) 279, 507, 1008
EcoO109I RGGNCCY 2 cut(s) 296, 796
EcoRII CCWGG 4 cut(s) 29, 78, 736, 1099
EcoT14I CCWWGG 4 cut(s) 299, 400, 911, 1065
ErhI CCWWGG 4 cut(s) 299, 400, 911, 1065
FaeI CATG 3 cut(s) 25, 404, 1069
FaiI YATR 8 cut(s) 23, 320, 402, 603, 954, 1017, 1046, 1067
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 3 cut(s) 226, 251, 782
FatI CATG 3 cut(s) 21, 400, 1065
FauI CCCGC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 6, 9, 713
FokI GGATG 2 cut(s) 938, 1094
Fsp4HI GCNGC 3 cut(s) 6, 9, 713
FspBI CTAG 3 cut(s) 35, 912, 959
GlaI GCGC 3 cut(s) 184, 1116, 1138
GluI GCNGC 3 cut(s) 6, 9, 713
GsaI CCCAGC 1 cut(s) 766
GsuI CTGGAG 2 cut(s) 1110, 1117
HaeII RGCGCY 2 cut(s) 1118, 1140
HaeIII GGCC 4 cut(s) 297, 405, 527, 1006
HapII CCGG 7 cut(s) 71, 98, 280, 413, 439, 485, 842
HgaI GACGC 1 cut(s) 893
HhaI GCGC 3 cut(s) 185, 1117, 1139
Hin1II CATG 3 cut(s) 25, 404, 1069
Hin6I GCGC 3 cut(s) 183, 1115, 1137
HinP1I GCGC 3 cut(s) 183, 1115, 1137
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 6 cut(s) 170, 689, 829, 851, 1120, 1130
HpaII CCGG 7 cut(s) 71, 98, 280, 413, 439, 485, 842
HphI GGTGA 6 cut(s) 74, 295, 376, 473, 512, 1048
Hpy166II GTNNAC 6 cut(s) 76, 252, 258, 633, 700, 988
Hpy188I TCNGA 6 cut(s) 56, 312, 494, 516, 723, 868
Hpy188III TCNNGA 7 cut(s) 263, 421, 640, 884, 1030, 1076, 1127
Hpy8I GTNNAC 6 cut(s) 76, 252, 258, 633, 700, 988
Hpy99I CGWCG 4 cut(s) 498, 558, 909, 976
HpyAV CCTTC 7 cut(s) 97, 283, 416, 612, 792, 991, 1027
HpyCH4III ACNGT 4 cut(s) 217, 242, 436, 630
HpyCH4IV ACGT 4 cut(s) 254, 268, 496, 971
HpyCH4V TGCA 1 cut(s) 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 35
HpyF3I CTNAG 3 cut(s) 53, 89, 1077
HpySE526I ACGT 4 cut(s) 254, 268, 496, 971
Hsp92II CATG 3 cut(s) 25, 404, 1069
HspAI GCGC 3 cut(s) 183, 1115, 1137
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 384, 396, 478, 535, 550
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 3 cut(s) 180, 1102, 1112
Lsp1109I GCAGC 3 cut(s) 17, 20, 724
LweI GCATC 2 cut(s) 349, 493
MaeI CTAG 3 cut(s) 35, 912, 959
MaeII ACGT 4 cut(s) 254, 268, 496, 971
MaeIII GTNAC 1 cut(s) 967
MalI GATC 5 cut(s) 386, 398, 480, 537, 552
MboI GATC 5 cut(s) 384, 396, 478, 535, 550
MboII GAAGA 8 cut(s) 298, 725, 823, 826, 846, 881, 929, 1006
MflI RGATCY 2 cut(s) 384, 396
MhlI GDGCHC 1 cut(s) 1099
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 3 cut(s) 107, 757, 787
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 3 cut(s) 683, 1114, 1124
MmeI TCCRAC 2 cut(s) 517, 877
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 527
MspI CCGG 7 cut(s) 71, 98, 280, 413, 439, 485, 842
MspR9I CCNGG 9 cut(s) 31, 80, 99, 280, 281, 414, 738, 842, 1101
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 4 cut(s) 31, 80, 738, 1101
MvnI CGCG 2 cut(s) 185, 234
MwoI GCNNNNNNNGC 2 cut(s) 14, 35
NciI CCSGG 5 cut(s) 99, 280, 281, 414, 842
NcoI CCATGG 2 cut(s) 400, 1065
NdeII GATC 5 cut(s) 384, 396, 478, 535, 550
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 25, 404, 1069
NlaIV GGNNCC 9 cut(s) 69, 96, 239, 398, 429, 623, 720, 798, 1063
NmeAIII GCCGAG 1 cut(s) 857
NspV TTCGAA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 1008
PceI AGGCCT 1 cut(s) 1006
PciSI GCTCTTC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PctI GAATGC 1 cut(s) 906
PfeI GAWTC 3 cut(s) 170, 829, 851
PfoI TCCNGGA 3 cut(s) 736, 840, 1099
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 3 cut(s) 7, 10, 714
PleI GAGTC 3 cut(s) 683, 1114, 1124
PpsI GAGTC 3 cut(s) 683, 1114, 1124
PpuMI RGGWCCY 1 cut(s) 796
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 4 cut(s) 29, 78, 736, 1099
PspFI CCCAGC 1 cut(s) 762
PspGI CCWGG 4 cut(s) 29, 78, 736, 1099
PspN4I GGNNCC 9 cut(s) 69, 96, 239, 398, 429, 623, 720, 798, 1063
PspPI GGNCC 5 cut(s) 187, 238, 296, 796, 1062
PspPPI RGGWCCY 1 cut(s) 796
PspXI VCTCGAGB 1 cut(s) 1008
PsuI RGATCY 2 cut(s) 384, 396
RsaI GTAC 2 cut(s) 634, 989
RsaNI GTAC 2 cut(s) 633, 988
Rsr2I CGGWCCG 1 cut(s) 187
RsrII CGGWCCG 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 738
SatI GCNGC 3 cut(s) 6, 9, 713
Sau3AI GATC 5 cut(s) 384, 396, 478, 535, 550
Sau96I GGNCC 5 cut(s) 187, 238, 296, 796, 1062
SchI GAGTC 3 cut(s) 683, 1114, 1124
ScrFI CCNGG 9 cut(s) 31, 80, 99, 280, 281, 414, 738, 842, 1101
SduI GDGCHC 1 cut(s) 1099
SfaNI GCATC 2 cut(s) 349, 493
Sfr274I CTCGAG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 4 cut(s) 187, 238, 796, 1062
SlaI CTCGAG 1 cut(s) 1008
SmaI CCCGGG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 1008, 1106
SmoI CTYRAG 2 cut(s) 1008, 1106
Sse9I AATT 3 cut(s) 107, 757, 787
SseBI AGGCCT 1 cut(s) 1006
SsiI CCGC 5 cut(s) 158, 185, 234, 362, 450
SspMI CTAG 3 cut(s) 35, 912, 959
StuI AGGCCT 1 cut(s) 1006
StyD4I CCNGG 9 cut(s) 29, 78, 97, 278, 279, 412, 736, 840, 1099
StyI CCWWGG 4 cut(s) 299, 400, 911, 1065
TaaI ACNGT 4 cut(s) 217, 242, 436, 630
TaiI ACGT 4 cut(s) 257, 271, 499, 974
TaqI TCGA 2 cut(s) 785, 1009
TasI AATT 3 cut(s) 107, 757, 787
TatI WGTACW 2 cut(s) 632, 987
TfiI GAWTC 3 cut(s) 170, 829, 851
TscAI CASTG 4 cut(s) 357, 439, 580, 828
TseI GCWGC 3 cut(s) 5, 8, 712
TspGWI ACGGA 3 cut(s) 179, 440, 663
TspMI CCCGGG 1 cut(s) 279
TspRI CASTG 4 cut(s) 357, 439, 580, 828
VpaK11BI GGWCC 4 cut(s) 187, 238, 796, 1062
XapI RAATTY 2 cut(s) 107, 787
XcmI CCANNNNNNNNNTGG 2 cut(s) 439, 535
XhoI CTCGAG 1 cut(s) 1008
XmaI CCCGGG 1 cut(s) 279
XmaJI CCTAGG 1 cut(s) 911
XspI CTAG 3 cut(s) 35, 912, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.