Rorug06G0018900

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
2458407 .. 2461115
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0018900.1

Sequence Viewer

Length: 996 bp
ATGGCCCTCTCGCTATTTCACCACCCATCTCTCACTCTCCCTTCACCACCACCACAGCCCTCTCCTCCTTCTCTCCGACCTTCACCCTCCACTTCCCTCCAATTTACACTCCCTGCCCCTCGCCCCCTCCTCCTCCTCCGCTCTTCCCGCCCAAACCGCCTCCACTCCTCACTCCGCGCCGGCCTCTCCTCCGCCGTCGATTCTCCCCCGCAGACTTCCGGCGGCCAACCCGAGAAGAAGCTCATCCTCCAAGTCAAAGACCTAACCGCCGTGATTGCCGAATCGAAGCAGCAGATTCTCAAAGGCGTTAACCTCACCGTCTACGAAGGTGAGGTTCACGCCGTCATGGGCAAGAACGGCTCCGGCAAAAGCACTTTCGCCAAGGTTTTGGTGGGGCATCCGGACTACGAAGTCACCGGAGGCAGTGTGGTGTTTAAAGGGCAAGACTTGCTGGAAATGGAAGCGGATGAGAGGTCCCTCGCCGGACTTTTTATGAGTTTTCAGTCGCCGGTTGAAATTCCGGGTGTGAGCAATATCAATTTTCTTCGTATGGCGTACAATGCTAAGAGAGAGAAGCTTGGATTGCCTGAGCTTGGAGTATTTGAGTTCTATGCTTATTTGTATCCGAAACTTGAACTTGTGAACATGAAGACGGATTTTCTTGATAGAAATGTTAATGAAGGCTTTAGCGGTGGTGAAAAGAAGCGCAATGAGATTTTACAACTGGCGGTTTTGGGGGCAGAATTGGCTTTATTGGATGAAATTGATTCTGGCCTGGATGTTGACGCGTTCCAAGATGTAGCCAAGGCAGTGAATGGGCTTTTAACTCCAACAAATTCTGTGTTGCTAATTACTCATTATCTACGGCTTCTACAATTTATAAAGCCAACATGCATCCACATTATGGAGAATGGGAAAATTGTGAAGACAGGTGACATCTCTTTGGCAGAAGCACTAGAGAAGGATGGTTATGAAGCAATTGCAAAATCACATTAA

Protein Analysis

331

Amino Acids

36.02

Weight (kDa)

6.26

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 100 - 254 3.7e-20 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 881
AasI GACNNNNNNGTC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 904
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 177, 788
AccIII TCCGGA 1 cut(s) 400
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 516, 835
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 593, 904
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 2 cut(s) 515, 635
AjnI CCWGG 1 cut(s) 774
AluBI AGCT 3 cut(s) 241, 577, 592
AluI AGCT 3 cut(s) 241, 577, 592
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 4 cut(s) 3, 181, 223, 772
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 516, 835
AspLEI GCGC 2 cut(s) 179, 708
AspS9I GGNCC 2 cut(s) 4, 474
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 8 cut(s) 11, 36, 75, 307, 341, 406, 707, 944
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 656, 932
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 34, 959
BceAI ACGGC 5 cut(s) 179, 254, 326, 373, 881
BciT130I CCWGG 1 cut(s) 776
BciVI GTATCC 1 cut(s) 633
BcnI CCSGG 1 cut(s) 522
BfaI CTAG 1 cut(s) 956
BfuI GTATCC 1 cut(s) 633
BisI GCNGC 2 cut(s) 223, 290
BlsI GCNGC 2 cut(s) 224, 291
Bme1390I CCNGG 2 cut(s) 522, 776
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 4, 474
BmiI GGNNCC 2 cut(s) 361, 476
BmrFI CCNGG 2 cut(s) 522, 776
BmsI GCATC 2 cut(s) 406, 903
BpiI GAAGAC 2 cut(s) 656, 932
Bpu10I CCTNAGC 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 381, 804
BsaWI WCCGGW 2 cut(s) 400, 416
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 904
Bse118I RCCGGY 2 cut(s) 179, 508
Bse1I ACTGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 715
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 2 cut(s) 381, 804
BseGI GGATG 7 cut(s) 243, 397, 472, 763, 784, 894, 970
BseLI CCNNNNNNNGG 2 cut(s) 593, 904
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 6 cut(s) 54, 119, 122, 125, 157, 178
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 2 cut(s) 177, 788
BshFI GGCC 4 cut(s) 5, 183, 225, 774
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 8 cut(s) 180, 219, 363, 401, 417, 483, 509, 521
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 593, 904
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 4 cut(s) 5, 183, 225, 774
BsoBI CYCGRG 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 400
BspANI GGCC 4 cut(s) 5, 183, 225, 774
BspCNI CTCAG 1 cut(s) 580
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 2 cut(s) 177, 788
BspLI GGNNCC 2 cut(s) 361, 476
BspQI GCTCTTC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 2 cut(s) 179, 508
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 2 cut(s) 179, 508
BssECI CCNNGG 2 cut(s) 381, 804
BssT1I CCWWGG 2 cut(s) 381, 804
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 564, 588
BstF5I GGATG 7 cut(s) 243, 397, 472, 763, 784, 894, 970
BstFNI CGCG 2 cut(s) 177, 788
BstHHI GCGC 2 cut(s) 179, 708
BstMWI GCNNNNNNNGC 8 cut(s) 147, 156, 275, 357, 448, 560, 583, 746
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 1 cut(s) 894
BstSCI CCNGG 2 cut(s) 520, 774
BstUI CGCG 2 cut(s) 177, 788
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 2 cut(s) 656, 932
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 4 cut(s) 5, 183, 225, 774
BtsCI GGATG 7 cut(s) 243, 397, 472, 763, 784, 894, 970
BtsI GCAGTG 2 cut(s) 430, 816
BtsIMutI CAGTG 2 cut(s) 430, 816
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 2 cut(s) 179, 708
Cfr10I RCCGGY 2 cut(s) 179, 508
Cfr13I GGNCC 2 cut(s) 4, 474
CseI GACGC 1 cut(s) 794
Csp6I GTAC 1 cut(s) 556
CviAII CATG 3 cut(s) 346, 646, 891
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 564, 588
DraI TTTAAA 1 cut(s) 436
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 381, 804
Eco47I GGWCC 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 381, 804
EcoT22I ATGCAT 1 cut(s) 896
ErhI CCWWGG 2 cut(s) 381, 804
FaeI CATG 3 cut(s) 349, 649, 894
FaiI YATR 9 cut(s) 347, 494, 551, 612, 647, 881, 892, 905, 972
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 345, 645, 890
FauI CCCGC 2 cut(s) 155, 216
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 223, 290
FokI GGATG 7 cut(s) 230, 384, 479, 770, 791, 881, 977
Fsp4HI GCNGC 2 cut(s) 223, 290
FspBI CTAG 1 cut(s) 956
GlaI GCGC 2 cut(s) 178, 707
GluI GCNGC 2 cut(s) 223, 290
HaeIII GGCC 4 cut(s) 5, 183, 225, 774
HapII CCGG 8 cut(s) 180, 219, 363, 401, 417, 483, 509, 521
HgaI GACGC 1 cut(s) 794
HhaI GCGC 2 cut(s) 179, 708
Hin1II CATG 3 cut(s) 349, 649, 894
Hin6I GCGC 2 cut(s) 177, 706
HinP1I GCGC 2 cut(s) 177, 706
HincII GTYRAC 2 cut(s) 310, 784
HindII GTYRAC 2 cut(s) 310, 784
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 200, 281, 295, 767
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 8 cut(s) 180, 219, 363, 401, 417, 483, 509, 521
HphI GGTGA 8 cut(s) 11, 36, 75, 307, 341, 406, 707, 944
Hpy166II GTNNAC 5 cut(s) 310, 322, 337, 643, 784
Hpy188I TCNGA 2 cut(s) 77, 627
Hpy188III TCNNGA 2 cut(s) 401, 662
Hpy8I GTNNAC 5 cut(s) 310, 322, 337, 643, 784
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 6 cut(s) 51, 78, 90, 320, 674, 955
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 894, 983
HpyF10VI GCNNNNNNNGC 8 cut(s) 147, 156, 275, 357, 448, 560, 583, 746
HpyF3I CTNAG 2 cut(s) 564, 588
Hsp92II CATG 3 cut(s) 349, 649, 894
HspAI GCGC 2 cut(s) 177, 706
Kpn2I TCCGGA 1 cut(s) 400
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
KspAI GTTAAC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 406, 903
MaeI CTAG 1 cut(s) 956
MaeIII GTNAC 2 cut(s) 412, 932
MbiI CCGCTC 1 cut(s) 141
MboII GAAGA 5 cut(s) 135, 247, 536, 661, 937
MfeI CAATTG 1 cut(s) 978
MluI ACGCGT 1 cut(s) 786
MmeI TCCRAC 2 cut(s) 100, 854
Mph1103I ATGCAT 1 cut(s) 896
MroI TCCGGA 1 cut(s) 400
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 5 cut(s) 309, 435, 675, 824, 994
MspI CCGG 8 cut(s) 180, 219, 363, 401, 417, 483, 509, 521
MspR9I CCNGG 2 cut(s) 522, 776
MunI CAATTG 1 cut(s) 978
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 2 cut(s) 177, 788
MwoI GCNNNNNNNGC 8 cut(s) 147, 156, 275, 357, 448, 560, 583, 746
NaeI GCCGGC 1 cut(s) 181
NciI CCSGG 1 cut(s) 522
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 349, 649, 894
NlaIV GGNNCC 2 cut(s) 361, 476
NmuCI GTSAC 2 cut(s) 412, 932
NsiI ATGCAT 1 cut(s) 896
NspI RCATGY 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 4 cut(s) 200, 281, 295, 767
PflMI CCANNNNNTGG 1 cut(s) 904
PkrI GCNGC 2 cut(s) 224, 291
PpuMI RGGWCCY 1 cut(s) 474
PsiI TTATAA 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 774
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 361, 476
PspPI GGNCC 2 cut(s) 4, 474
PspPPI RGGWCCY 1 cut(s) 474
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 5 cut(s) 309, 435, 675, 824, 994
SatI GCNGC 2 cut(s) 223, 290
Sau96I GGNCC 2 cut(s) 4, 474
ScrFI CCNGG 2 cut(s) 522, 776
SfaNI GCATC 2 cut(s) 406, 903
SinI GGWCC 1 cut(s) 474
SspMI CTAG 1 cut(s) 956
StyD4I CCNGG 2 cut(s) 520, 774
StyI CCWWGG 2 cut(s) 381, 804
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 198, 284
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 4 cut(s) 200, 281, 295, 767
Tru1I TTAA 5 cut(s) 309, 435, 675, 824, 994
Tru9I TTAA 5 cut(s) 309, 435, 675, 824, 994
TscAI CASTG 2 cut(s) 430, 816
TseFI GTSAC 2 cut(s) 412, 932
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 2 cut(s) 412, 932
TspDTI ATGAA 4 cut(s) 662, 693, 774, 987
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 430, 816
Van91I CCANNNNNTGG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 516, 835
XceI RCATGY 1 cut(s) 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 956
Zsp2I ATGCAT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.