Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

7731462 .. 7732023

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCAACGACCTCCATGGCTCTCAAAACCGCGGCAGCCTCTACTACTTCGGTAACAGCGAGCCTCATCTCAAAGCTCTCTCTGAGCAACCAAGAAGAACCGGTGGATCTAGGTAATCTCCGGTGTCCTAAGAGTGGTTTCGTGGCTCCACGTTTCTATCTCGTCGGACATTTGAACACCACCCGTGCAATTATCTTTGATGCATTCAGGAGCGCAGTTCGCTCCATGTGGAGGCTTCCAACTCCGGTGGAGGTGCAGGCAAGAGGAGACCGATTTTTGTTCACGTTCTCGTCAGAAAGGGATGTGAACAAAGTGAAGAGAGGAGGACCGTGGGCATACCAGAGAGCCATGATCATCCTCAACGACTATGATGGCTTCTCAGACATCATGTTGACCACGGTGGATTCCAGCGAGGGCTTGCCCGAGTCCGGCTTACCTTACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

149

Amino Acids

16.31

Weight (kDa)

8.85

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	53 - 124	1.5e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	30, 32
AclWI	GGATC	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	134, 231, 428
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	15, 30, 329, 396
BsaWI	WCCGGW	3 cut(s)	100, 120, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 231, 428
Bse118I	RCCGGY	1 cut(s)	100
BseDI	CCNNGG	4 cut(s)	15, 30, 329, 396
BseGI	GGATG	2 cut(s)	307, 354
BseLI	CCNNNNNNNGG	3 cut(s)	134, 231, 428
BseMII	CTCAG	2 cut(s)	74, 393
BseRI	GAGGAG	2 cut(s)	279, 336
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	4 cut(s)	101, 121, 245, 429
BslI	CCNNNNNNNGG	3 cut(s)	134, 231, 428
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	106, 351
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	30, 32
BspCNI	CTCAG	2 cut(s)	75, 392
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	4 cut(s)	15, 30, 329, 396
BssMI	GATC	2 cut(s)	106, 351
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	330, 400
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	61, 258, 419
BstDEI	CTNAG	3 cut(s)	83, 129, 379
BstDSI	CCRYGG	4 cut(s)	15, 30, 329, 396
BstF5I	GGATG	2 cut(s)	307, 354
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	109, 354
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	106, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtgI	CCRYGG	4 cut(s)	15, 30, 329, 396
BtsCI	GGATG	2 cut(s)	307, 354
Cac8I	GCNNGC	3 cut(s)	61, 258, 419
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	326
Cfr42I	CCGCGG	1 cut(s)	33
CspAI	ACCGGT	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	4 cut(s)	16, 226, 349, 388
DdeI	CTNAG	3 cut(s)	83, 129, 379
DpnI	GATC	2 cut(s)	108, 353
DpnII	GATC	2 cut(s)	106, 351
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	19, 229, 352, 391
FaiI	YATR	6 cut(s)	17, 227, 337, 350, 369, 389
FatI	CATG	4 cut(s)	15, 225, 348, 387
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	2 cut(s)	314, 341
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	33, 36
HapII	CCGG	4 cut(s)	101, 121, 245, 429
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	19, 229, 352, 391
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	2 cut(s)	404, 425
HpaII	CCGG	4 cut(s)	101, 121, 245, 429
Hpy166II	GTNNAC	3 cut(s)	282, 307, 393
Hpy188I	TCNGA	5 cut(s)	84, 167, 295, 382, 446
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	3 cut(s)	282, 307, 393
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	330, 400
HpyCH4IV	ACGT	2 cut(s)	151, 284
HpyCH4V	TGCA	3 cut(s)	188, 203, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	3 cut(s)	83, 129, 379
HpySE526I	ACGT	2 cut(s)	151, 284
Hsp92II	CATG	4 cut(s)	19, 229, 352, 391
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	351
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	106, 351
LmnI	GCTCC	3 cut(s)	151, 210, 227
LpnPI	CCDG	8 cut(s)	114, 134, 193, 242, 258, 353, 421, 442
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	151, 284
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	108, 353
MboI	GATC	2 cut(s)	106, 351
MboII	GAAGA	2 cut(s)	107, 328
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	2 cut(s)	145, 263
Mph1103I	ATGCAT	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	4 cut(s)	101, 121, 245, 429
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	106, 351
NlaIII	CATG	4 cut(s)	19, 229, 352, 391
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	404
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	106
SacII	CCGCGG	1 cut(s)	33
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	2 cut(s)	106, 351
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	434
SetI	ASST	8 cut(s)	14, 78, 115, 154, 255, 287, 439, 444
SfaNI	GCATC	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	30, 32
SspMI	CTAG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	330, 400
TaiI	ACGT	2 cut(s)	154, 287
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	189
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	326
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.