Rmu_sc0039260.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039260.1
Physical Location & Seq
Forward (+)
6340 .. 7557
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039260.1_g000001.1.cds

Sequence Viewer

Length: 840 bp
atggcagcggctattgcttccatgacggccaggctagcgaccaaattgtcgctcatagagggtgacgaactggttgacctaggaaaccttagggttctagggaagaagtttcttgctctttgttgctacttggtggggaaactcaacacttgtagggcggtgattttggattctttcaggagtacggtgcggtcaatgtggagactaacggggaccgtggaggtccaaccacgcggggatagttttctgtttacgttcactcttgaacgtgatgtcgcacgggtgaagaagggtgggccttggagttttcagcgtgctatgattttgttgaatgattacgatggctttttggtgattgatgaggtgaagcttgactttggtttcgactaccgacgttctcactttgaggtttcagtacgagcgacttttggggaggtgcagactatgtactttcttgaatcatggaggacagaggtgtccaagggaggatgtggtacctctgttcttgtccctgtggttgggatgcgttgccttagggaggaggaggatgaggatgctggtaaacgagctaaacatcgtttagctctagttttgggcactctgcaaccggaaaacctagggctggaattctcctctgatggtttggtggaggtgaaggtgatgtcgcctcccaaggtgtacaagaagaagggcaggcctcgaggacatggaaacaaggttaaggcggcgatgtctgtgagtggtggttccgggtccatggtcactactgaggatggtcctagcagtgtgcatggaaggcttgggggagcgacagctccgccggattctcgagctgattag

Protein Analysis

279

Amino Acids

30.53

Weight (kDa)

9.07

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 46, 475
AbsI CCTCGAGG 1 cut(s) 699
Acc65I GGTACC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 494
AccII CGCG 1 cut(s) 234
AciI CCGC 6 cut(s) 8, 158, 190, 234, 725, 818
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 626
AfaI GTAC 5 cut(s) 184, 417, 449, 496, 680
AfiI CCNNNNNNNGG 3 cut(s) 518, 538, 622
AgsI TTSAA 3 cut(s) 266, 331, 458
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 5 cut(s) 370, 569, 584, 815, 833
AluI AGCT 5 cut(s) 370, 569, 584, 815, 833
Alw26I GTCTC 1 cut(s) 196
Ama87I CYCGRG 2 cut(s) 699, 828
AoxI GGCC 3 cut(s) 27, 296, 695
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 626
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
Asp718I GGTACC 1 cut(s) 494
AspA2I CCTAGG 2 cut(s) 79, 616
AspS9I GGNCC 5 cut(s) 213, 223, 296, 753, 776
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 7 cut(s) 74, 172, 295, 364, 376, 664, 670
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 2 cut(s) 699, 828
AvaII GGWCC 4 cut(s) 213, 223, 753, 776
AvrII CCTAGG 2 cut(s) 79, 616
AxyI CCTNAGG 2 cut(s) 89, 533
BaeGI GKGCMC 1 cut(s) 599
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BanI GGYRCC 1 cut(s) 494
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 335, 632, 767
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 6 cut(s) 35, 80, 98, 587, 617, 780
BisI GCNGC 3 cut(s) 6, 9, 726
BlnI CCTAGG 2 cut(s) 79, 616
BlsI GCNGC 3 cut(s) 7, 10, 727
Bme1390I CCNGG 2 cut(s) 31, 751
Bme18I GGWCC 4 cut(s) 213, 223, 753, 776
BmeT110I CYCGRG 2 cut(s) 699, 828
BmgT120I GGNCC 5 cut(s) 213, 223, 296, 753, 776
BmiI GGNNCC 4 cut(s) 214, 496, 748, 754
BmrFI CCNGG 2 cut(s) 31, 751
BmsI GCATC 2 cut(s) 513, 544
BmtI GCTAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 751
BsaJI CCNNGG 7 cut(s) 79, 216, 299, 480, 616, 672, 756
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 538, 622
Bse1I ACTGG 1 cut(s) 75
Bse21I CCTNAGG 2 cut(s) 89, 533
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 7 cut(s) 79, 216, 299, 480, 616, 672, 756
BseGI GGATG 5 cut(s) 494, 528, 553, 559, 778
BseLI CCNNNNNNNGG 3 cut(s) 518, 538, 622
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 3 cut(s) 554, 557, 622
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 29, 298, 697
BshNI GGYRCC 1 cut(s) 494
BsiHKCI CYCGRG 2 cut(s) 699, 828
BsiSI CCGG 3 cut(s) 608, 750, 821
BslFI GGGAC 2 cut(s) 226, 494
BslI CCNNNNNNNGG 3 cut(s) 518, 538, 622
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 226, 494
BsnI GGCC 3 cut(s) 29, 298, 697
BsoBI CYCGRG 2 cut(s) 699, 828
Bsp1286I GDGCHC 1 cut(s) 599
Bsp1407I TGTACA 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 6 cut(s) 8, 158, 190, 234, 725, 818
BspANI GGCC 3 cut(s) 29, 298, 697
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 4 cut(s) 214, 496, 748, 754
BspOI GCTAGC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 7 cut(s) 79, 216, 299, 480, 616, 672, 756
BssT1I CCWWGG 6 cut(s) 79, 299, 480, 616, 672, 756
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 187, 217
BstAUI TGTACA 1 cut(s) 678
BstC8I GCNNGC 3 cut(s) 36, 315, 695
BstDEI CTNAG 3 cut(s) 89, 533, 768
BstDSI CCRYGG 2 cut(s) 216, 756
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 5 cut(s) 494, 528, 553, 559, 778
BstFNI CGCG 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 796
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 749
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 2 cut(s) 89, 533
BsuRI GGCC 3 cut(s) 29, 298, 697
BtgI CCRYGG 2 cut(s) 216, 756
BtgZI GCGATG 1 cut(s) 743
BtsCI GGATG 5 cut(s) 494, 528, 553, 559, 778
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 790
Cac8I GCNNGC 3 cut(s) 36, 315, 695
Cfr13I GGNCC 5 cut(s) 213, 223, 296, 753, 776
Csp6I GTAC 5 cut(s) 183, 416, 448, 495, 679
CviAII CATG 5 cut(s) 22, 462, 707, 757, 791
CviQI GTAC 5 cut(s) 183, 416, 448, 495, 679
DdeI CTNAG 3 cut(s) 89, 533, 768
DrdI GACNNNNNNGTC 2 cut(s) 46, 475
DseDI GACNNNNNNGTC 2 cut(s) 46, 475
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 1 cut(s) 807
Eco130I CCWWGG 6 cut(s) 79, 299, 480, 616, 672, 756
Eco147I AGGCCT 1 cut(s) 697
Eco47I GGWCC 4 cut(s) 213, 223, 753, 776
Eco81I CCTNAGG 2 cut(s) 89, 533
Eco88I CYCGRG 2 cut(s) 699, 828
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 6 cut(s) 79, 299, 480, 616, 672, 756
ErhI CCWWGG 6 cut(s) 79, 299, 480, 616, 672, 756
FaeI CATG 5 cut(s) 25, 465, 710, 760, 794
FaiI YATR 8 cut(s) 23, 56, 320, 446, 463, 708, 758, 792
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 2 cut(s) 226, 494
FatI CATG 5 cut(s) 21, 461, 706, 756, 790
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 3 cut(s) 6, 9, 726
FokI GGATG 5 cut(s) 501, 535, 560, 566, 785
Fsp4HI GCNGC 3 cut(s) 6, 9, 726
FspBI CTAG 6 cut(s) 35, 80, 98, 587, 617, 780
GluI GCNGC 3 cut(s) 6, 9, 726
HaeIII GGCC 3 cut(s) 29, 298, 697
HapII CCGG 3 cut(s) 608, 750, 821
Hin1II CATG 5 cut(s) 25, 465, 710, 760, 794
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 170, 458, 824
HpaII CCGG 3 cut(s) 608, 750, 821
HphI GGTGA 7 cut(s) 74, 172, 295, 364, 376, 664, 670
Hpy166II GTNNAC 5 cut(s) 76, 252, 258, 563, 679
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 4 cut(s) 178, 263, 455, 828
Hpy8I GTNNAC 5 cut(s) 76, 252, 258, 563, 679
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 4 cut(s) 283, 649, 682, 789
HpyCH4III ACNGT 2 cut(s) 187, 217
HpyCH4IV ACGT 3 cut(s) 254, 268, 394
HpyCH4V TGCA 3 cut(s) 439, 604, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 796
HpyF3I CTNAG 3 cut(s) 89, 533, 768
HpySE526I ACGT 3 cut(s) 254, 268, 394
Hsp92II CATG 5 cut(s) 25, 465, 710, 760, 794
KpnI GGTACC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 806, 820
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 513, 544
MaeI CTAG 6 cut(s) 35, 80, 98, 587, 617, 780
MaeII ACGT 3 cut(s) 254, 268, 394
MaeIII GTNAC 2 cut(s) 62, 760
MboII GAAGA 3 cut(s) 115, 298, 697
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 2 cut(s) 44, 626
MmeI TCCRAC 1 cut(s) 250
MseI TTAA 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 3 cut(s) 608, 750, 821
MspR9I CCNGG 2 cut(s) 31, 751
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 796
NciI CCSGG 1 cut(s) 751
NcoI CCATGG 1 cut(s) 756
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 5 cut(s) 25, 465, 710, 760, 794
NlaIV GGNNCC 4 cut(s) 214, 496, 748, 754
NmuCI GTSAC 2 cut(s) 62, 760
PaeR7I CTCGAG 2 cut(s) 699, 828
PceI AGGCCT 1 cut(s) 697
PfeI GAWTC 3 cut(s) 170, 458, 824
PkrI GCNGC 3 cut(s) 7, 10, 727
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 4 cut(s) 214, 496, 748, 754
PspPI GGNCC 5 cut(s) 213, 223, 296, 753, 776
PspXI VCTCGAGB 1 cut(s) 699
RsaI GTAC 5 cut(s) 184, 417, 449, 496, 680
RsaNI GTAC 5 cut(s) 183, 416, 448, 495, 679
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 3 cut(s) 6, 9, 726
Sau96I GGNCC 5 cut(s) 213, 223, 296, 753, 776
ScrFI CCNGG 2 cut(s) 31, 751
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 2 cut(s) 513, 544
Sfr274I CTCGAG 2 cut(s) 699, 828
SinI GGWCC 4 cut(s) 213, 223, 753, 776
SlaI CTCGAG 2 cut(s) 699, 828
SmlI CTYRAG 2 cut(s) 699, 828
SmoI CTYRAG 2 cut(s) 699, 828
Sse9I AATT 2 cut(s) 44, 626
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 6 cut(s) 8, 158, 190, 234, 725, 818
SspMI CTAG 6 cut(s) 35, 80, 98, 587, 617, 780
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 2 cut(s) 29, 749
StyI CCWWGG 6 cut(s) 79, 299, 480, 616, 672, 756
TaaI ACNGT 2 cut(s) 187, 217
TaiI ACGT 3 cut(s) 257, 271, 397
TaqI TCGA 3 cut(s) 384, 700, 829
TasI AATT 2 cut(s) 44, 626
TatI WGTACW 2 cut(s) 447, 678
TauI GCSGC 2 cut(s) 11, 728
TfiI GAWTC 3 cut(s) 170, 458, 824
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 2 cut(s) 62, 760
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 62, 760
TspRI CASTG 1 cut(s) 790
VpaK11BI GGWCC 4 cut(s) 213, 223, 753, 776
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 626
XhoI CTCGAG 2 cut(s) 699, 828
XmaJI CCTAGG 2 cut(s) 79, 616
XspI CTAG 6 cut(s) 35, 80, 98, 587, 617, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.