Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

26309406 .. 26310892

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGAATGTAACAGTGAACAAATGGAAGTATGGAACAAATAGAACAATTACAAAGATAAAGGAAAACTCGCCGCAAAAAGAGGAAGGAAACCATACCAAGAGAACTCGCCGGAAAACTCGAACCAGGAAGAGGCCAAAGACCAACGAAACCCCGATTCCAGAAAGAGCCTTACTTTCTTATGAACACTTGCTTAGAACACTGCCCTGGACGCTGCCACTTAATCTCGGCGGCCTTCCATGTCCCCGTCAGAAGGAGCTCTCTCAAGTTGCGTCCCCGACAGCGGCATCAACTTTGACTAGTACTCCTTCTATGATGAACCCTGATGCGCTAGGGTTTTTGATTGCTTTGAATGGAGACCTAAGAATCATCCGCACTGGAAAATCTCCTAAGAAGAGGGGTCGTCCTCATCAGACTCCATGGCACTTGCGGCTTGGTGATGGAGGAGAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

10.69

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	74, 231, 284, 373, 430
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	132, 253, 283
AgsI	TTSAA	1 cut(s)	352
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	125, 206
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	2 cut(s)	134, 232
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	127, 208
BcoDI	GTCTC	1 cut(s)	351
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	2 cut(s)	300, 332
BisI	GCNGC	5 cut(s)	74, 215, 232, 285, 431
BlsI	GCNGC	5 cut(s)	75, 216, 233, 286, 432
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	127, 208
BmrFI	CCNGG	2 cut(s)	127, 208
BmsI	GCATC	2 cut(s)	296, 316
BpuEI	CTTGAG	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	206, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 253, 283
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	127, 208
BseDI	CCNNGG	2 cut(s)	206, 419
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	132, 253, 283
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	2 cut(s)	136, 234
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	228, 259
BslI	CCNNNNNNNGG	3 cut(s)	132, 253, 283
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	2 cut(s)	228, 259
BsnI	GGCC	2 cut(s)	136, 234
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	5 cut(s)	74, 231, 284, 373, 430
BspANI	GGCC	2 cut(s)	136, 234
BspTNI	GGTCTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	206, 419
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	127, 208
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	125, 389
BstDEI	CTNAG	3 cut(s)	194, 362, 390
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 430
BstNI	CCWGG	2 cut(s)	127, 208
BstSCI	CCNGG	2 cut(s)	125, 206
BstV1I	GCAGC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	136, 234
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	3 cut(s)	21, 200, 375
CfoI	GCGC	1 cut(s)	331
CseI	GACGC	2 cut(s)	220, 261
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	240, 420
CviJI	RGCY	5 cut(s)	136, 170, 234, 259, 433
CviKI_1	RGCY	5 cut(s)	136, 170, 234, 259, 433
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	194, 362, 390
Eam1104I	CTCTTC	2 cut(s)	125, 389
EarI	CTCTTC	2 cut(s)	125, 389
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	125, 206
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	243, 423
FaiI	YATR	6 cut(s)	33, 96, 183, 241, 314, 421
FaqI	GGGAC	2 cut(s)	228, 259
FatI	CATG	2 cut(s)	239, 419
Fnu4HI	GCNGC	5 cut(s)	74, 215, 232, 285, 431
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	74, 215, 232, 285, 431
FspBI	CTAG	2 cut(s)	300, 332
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	5 cut(s)	74, 215, 232, 285, 431
HaeIII	GGCC	2 cut(s)	136, 234
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	2 cut(s)	220, 261
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	243, 423
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	3 cut(s)	157, 366, 415
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	252, 414
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	80, 245, 247, 318
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 430
HpyF3I	CTNAG	3 cut(s)	194, 362, 390
Hsp92II	CATG	2 cut(s)	243, 423
HspAI	GCGC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	8 cut(s)	112, 125, 139, 174, 193, 220, 336, 363
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	296, 316
MaeI	CTAG	2 cut(s)	300, 332
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	16, 142, 406
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	76, 126, 390, 417, 437
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	127, 208
MvaI	CCWGG	2 cut(s)	127, 208
MwoI	GCNNNNNNNGC	2 cut(s)	211, 430
NcoI	CCATGG	1 cut(s)	419
NlaIII	CATG	2 cut(s)	243, 423
NmeAIII	GCCGAG	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	157, 366
PkrI	GCNGC	5 cut(s)	75, 216, 233, 286, 432
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	125, 206
PspGI	CCWGG	2 cut(s)	125, 206
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	5 cut(s)	74, 215, 232, 285, 431
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	127, 208
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	2 cut(s)	261, 363
SfaNI	GCATC	2 cut(s)	296, 316
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	5 cut(s)	74, 231, 284, 373, 430
SspMI	CTAG	2 cut(s)	300, 332
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	125, 206
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	4 cut(s)	76, 234, 287, 433
TfiI	GAWTC	2 cut(s)	157, 366
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	21, 207, 382
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	17, 198, 332
TspRI	CASTG	3 cut(s)	21, 207, 382
XspI	CTAG	2 cut(s)	300, 332
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.