FvH4_2g14332

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000172
Physical Location & Seq
Forward (+)
12605054 .. 12605613
560 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14332.t1

Sequence Viewer

Length: 438 bp
ATGCGGCCCGTCCAGCCGGCACCCTCTGACCCTGCTCCAATGAATTTTACGGCTAGCTCTTCGCAAACCCTAATTCCTCCTTCTCCCATGCTATCGTCCCTTTCTCCTCTCTTTGCTAAAGAGAAGATAATTATGCAGCTCGAACCTGAGGAAATAGGGTTCGTGGTGGGGAATGATGGAGCTTTGGGTATTTTGAAGAAATCTCCAAGGAAGAGAGGACGCCCACGCGGCAACAAGAACAAAAAGATGGGTCAGCAAGATGCGACTTCGGAGGCTTCTGGATTAGATACGGTTGAGCAGGAAGCCTCTCCAGAGGCAGGTGAAGAGTATTTGTTCTGTTTGAAGAACAAAGTTCCCTACATGACTAAATCAAAGGCTCCCCTCTTTGTTGATGGACAGGTACACTGTTGTGTCTCTACAGTGGCGGAGCCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.6

Weight (kDa)

7.68

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 4, 228, 425
AcsI RAATTY 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 196, 343
AleI CACNNNNGTG 1 cut(s) 408
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 3 cut(s) 57, 139, 182
AluI AGCT 3 cut(s) 57, 139, 182
Alw26I GTCTC 1 cut(s) 418
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 148
BccI CCATC 3 cut(s) 170, 241, 386
BceAI ACGGC 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 2 cut(s) 54, 436
BfmI CTRYAG 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 228
BisI GCNGC 3 cut(s) 5, 137, 229
BlsI GCNGC 3 cut(s) 6, 138, 230
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 3 cut(s) 21, 378, 429
BmsI GCATC 1 cut(s) 250
BmtI GCTAGC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 16
Bse21I CCTNAGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 7
BspACI CCGC 3 cut(s) 4, 228, 425
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 21, 378, 429
BspMI ACCTGC 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 206
BssNI GRCGYC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 292, 407, 421
Bst6I CTCTTC 3 cut(s) 64, 206, 318
BstACI GRCGYC 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 18, 55, 432
BstDEI CTNAG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 418
BstMWI GCNNNNNNNGC 3 cut(s) 13, 228, 431
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 7
BtsIMutI CAGTG 2 cut(s) 403, 426
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 18, 55, 432
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 401
CviAII CATG 2 cut(s) 88, 361
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 64, 206, 318
EarI CTCTTC 3 cut(s) 64, 206, 318
Eco130I CCWWGG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 2 cut(s) 91, 364
FaiI YATR 3 cut(s) 89, 134, 362
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 87, 360
Fnu4HI GCNGC 3 cut(s) 5, 137, 229
Fsp4HI GCNGC 3 cut(s) 5, 137, 229
FspBI CTAG 2 cut(s) 54, 436
GluI GCNGC 3 cut(s) 5, 137, 229
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 2 cut(s) 91, 364
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 2 cut(s) 28, 271
Hpy188III TCNNGA 2 cut(s) 279, 311
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 292, 407, 421
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 228, 431
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 2 cut(s) 91, 364
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 4 cut(s) 40, 179, 382, 427
LpnPI CCDG 9 cut(s) 26, 30, 45, 159, 264, 284, 303, 324, 383
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 54, 436
MboII GAAGA 6 cut(s) 51, 136, 208, 223, 335, 355
MluCI AATT 3 cut(s) 43, 72, 129
MnlI CCTC 9 cut(s) 34, 87, 117, 142, 209, 265, 307, 316, 392
MroNI GCCGGC 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 13, 228, 431
NaeI GCCGGC 1 cut(s) 18
NgoMIV GCCGGC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 91, 364
NlaIV GGNNCC 3 cut(s) 21, 378, 429
OliI CACNNNNGTG 1 cut(s) 408
PaqCI CACCTGC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 6, 138, 230
PspN4I GGNNCC 3 cut(s) 21, 378, 429
PspPI GGNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 64
SatI GCNGC 3 cut(s) 5, 137, 229
Sau96I GGNCC 1 cut(s) 6
SetI ASST 6 cut(s) 59, 141, 148, 184, 322, 402
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 3 cut(s) 43, 72, 129
SsiI CCGC 3 cut(s) 4, 228, 425
SspMI CTAG 2 cut(s) 54, 436
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 292, 407, 421
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 43, 72, 129
TauI GCSGC 2 cut(s) 7, 231
TscAI CASTG 2 cut(s) 410, 426
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 2 cut(s) 410, 426
XapI RAATTY 1 cut(s) 43
XspI CTAG 2 cut(s) 54, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.