Rmu_sc0008709.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008709.1
OG0000172
Physical Location & Seq
Forward (+)
11687 .. 12388
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008709.1_g000005.1.cds

Sequence Viewer

Length: 702 bp
atgtttttcctgaattattatgatggtttctcgaagatttcttctgtgaagttggactctgtttggatctgggttacattgaagggcataccttcgagcatattgactgaacccactgtccagttggttggtgggacaattggtgaggttccggaggtggatcgcatggcattgcataggggaaatgcacgagtcccgcttgttctctctatccatgatccggtgcattttgactgtagggttagggtttattctgttgatgtcttaaccctaagattcgagtatgaaaggctcctagggcgctgtcactcctgtgctatgctaaaccatggtggccagcattgccctagggtggatgactcggaggttgattctgtggtggagatggattcgcagtcagcaacagggccaatggttccagcccttgtctttagggccaacgtactgccttctatttcttctcaattactttctgccttcaaggttcccaatatgctgaagaagaaatctgtgcagatccgagagcttccagactgtcatcccttctctttctctctctctctctctctcttcttcttccccctacaaccacggaagaacaccatctccggccacctcctcttgacactgcctccacccttcgaaccaacacccaaatccgatcaaagcccagccattctaccaacgatcgaaagctcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

233

Amino Acids

25.93

Weight (kDa)

6.7

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 197
AclWI GGATC 4 cut(s) 74, 168, 212, 511
AcoI YGGCCR 2 cut(s) 334, 610
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 220, 352
AgsI TTSAA 2 cut(s) 82, 481
AleI CACNNNNGTG 1 cut(s) 312
AloI GAACNNNNNNTCC 4 cut(s) 102, 134, 590, 622
AluBI AGCT 2 cut(s) 526, 696
AluI AGCT 2 cut(s) 526, 696
AlwI GGATC 4 cut(s) 74, 168, 212, 511
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 4 cut(s) 334, 407, 435, 610
AspA2I CCTAGG 2 cut(s) 295, 347
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 407, 435
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 642
AvrII CCTAGG 2 cut(s) 295, 347
BalI TGGCCA 1 cut(s) 336
BauI CACGAG 1 cut(s) 189
BccI CCATC 3 cut(s) 17, 379, 611
BfaI CTAG 2 cut(s) 296, 348
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 304
BlnI CCTAGG 2 cut(s) 295, 347
BmgT120I GGNCC 2 cut(s) 407, 435
BmiI GGNNCC 4 cut(s) 150, 293, 417, 486
Bpu14I TTCGAA 1 cut(s) 642
BsaJI CCNNGG 4 cut(s) 295, 328, 347, 590
BsaWI WCCGGW 2 cut(s) 151, 220
BsaXI ACNNNNNCTCC 4 cut(s) 590, 616, 620, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 352
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 170, 340
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 4 cut(s) 295, 328, 347, 590
BseGI GGATG 2 cut(s) 361, 538
BseLI CCNNNNNNNGG 2 cut(s) 220, 352
BseMI GCAATG 2 cut(s) 170, 340
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 608
BseYI CCCAGC 1 cut(s) 670
BsgI GTGCAG 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 4 cut(s) 336, 409, 437, 612
BsiEI CGRYCG 1 cut(s) 690
BsiSI CCGG 3 cut(s) 152, 221, 609
BslFI GGGAC 2 cut(s) 148, 179
BslI CCNNNNNNNGG 2 cut(s) 220, 352
BsmFI GGGAC 2 cut(s) 148, 179
BsnI GGCC 4 cut(s) 336, 409, 437, 612
Bsp119I TTCGAA 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 6 cut(s) 66, 160, 217, 516, 661, 687
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 1 cut(s) 197
BspANI GGCC 4 cut(s) 336, 409, 437, 612
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 4 cut(s) 150, 293, 417, 486
BspPI GGATC 4 cut(s) 74, 168, 212, 511
BspT104I TTCGAA 1 cut(s) 642
BsrDI GCAATG 2 cut(s) 170, 340
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 295, 328, 347, 590
BssMI GATC 6 cut(s) 66, 160, 217, 516, 661, 687
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 3 cut(s) 295, 328, 347
Bst2BI CACGAG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 118, 236, 536
Bst6I CTCTTC 1 cut(s) 575
BstBI TTCGAA 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 2 cut(s) 328, 590
BstF5I GGATG 2 cut(s) 361, 538
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 6 cut(s) 69, 163, 220, 519, 664, 690
BstMBI GATC 6 cut(s) 66, 160, 217, 516, 661, 687
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 2 cut(s) 298, 342
BstSFI CTRYAG 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 66, 516
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 2 cut(s) 66, 516
BsuRI GGCC 4 cut(s) 336, 409, 437, 612
BtgI CCRYGG 2 cut(s) 328, 590
BtsCI GGATG 2 cut(s) 361, 538
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 2 cut(s) 114, 626
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 407, 435
Csp6I GTAC 1 cut(s) 443
CviAII CATG 3 cut(s) 166, 215, 329
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 272
DpnI GATC 6 cut(s) 68, 162, 219, 518, 663, 689
DpnII GATC 6 cut(s) 66, 160, 217, 516, 661, 687
EaeI YGGCCR 2 cut(s) 334, 610
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Eco130I CCWWGG 3 cut(s) 295, 328, 347
Eco57I CTGAAG 1 cut(s) 518
EcoT14I CCWWGG 3 cut(s) 295, 328, 347
ErhI CCWWGG 3 cut(s) 295, 328, 347
FaeI CATG 3 cut(s) 169, 218, 332
FaqI GGGAC 2 cut(s) 148, 179
FatI CATG 3 cut(s) 165, 214, 328
FauI CCCGC 1 cut(s) 204
FokI GGATG 2 cut(s) 368, 525
FspBI CTAG 2 cut(s) 296, 348
GlaI GCGC 1 cut(s) 302
GsaI CCCAGC 1 cut(s) 674
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 4 cut(s) 336, 409, 437, 612
HapII CCGG 3 cut(s) 152, 221, 609
HhaI GCGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 169, 218, 332
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 6 cut(s) 56, 192, 276, 359, 371, 389
HpaII CCGG 3 cut(s) 152, 221, 609
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 364, 521, 661
Hpy188III TCNNGA 5 cut(s) 10, 31, 152, 530, 622
HpyAV CCTTC 6 cut(s) 76, 102, 459, 487, 553, 649
HpyCH4III ACNGT 3 cut(s) 118, 236, 536
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 175, 188, 226, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 342
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 169, 218, 332
HspAI GCGC 1 cut(s) 301
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 6 cut(s) 66, 160, 217, 516, 661, 687
LmnI GCTCC 2 cut(s) 297, 701
MaeI CTAG 2 cut(s) 296, 348
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 73, 305
MalI GATC 6 cut(s) 68, 162, 219, 518, 663, 689
MboI GATC 6 cut(s) 66, 160, 217, 516, 661, 687
MboII GAAGA 9 cut(s) 33, 46, 450, 511, 514, 562, 565, 568, 607
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 66, 516
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 3 cut(s) 13, 138, 464
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 3 cut(s) 50, 201, 353
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 139, 148, 358, 626, 629, 642
Mox20I TGGCCA 1 cut(s) 336
MroI TCCGGA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 3 cut(s) 152, 221, 609
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 298, 342
NcoI CCATGG 1 cut(s) 328
NdeII GATC 6 cut(s) 66, 160, 217, 516, 661, 687
NlaIII CATG 3 cut(s) 169, 218, 332
NlaIV GGNNCC 4 cut(s) 150, 293, 417, 486
NmuCI GTSAC 1 cut(s) 305
NspV TTCGAA 1 cut(s) 642
OliI CACNNNNGTG 1 cut(s) 312
PfeI GAWTC 3 cut(s) 276, 371, 389
Ple19I CGATCG 1 cut(s) 690
PleI GAGTC 3 cut(s) 50, 200, 353
PpsI GAGTC 3 cut(s) 50, 200, 353
PspFI CCCAGC 1 cut(s) 670
PspN4I GGNNCC 4 cut(s) 150, 293, 417, 486
PspPI GGNCC 2 cut(s) 407, 435
PsuI RGATCY 2 cut(s) 66, 516
PvuI CGATCG 1 cut(s) 690
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 6 cut(s) 66, 160, 217, 516, 661, 687
Sau96I GGNCC 2 cut(s) 407, 435
SchI GAGTC 3 cut(s) 50, 201, 353
SetI ASST 9 cut(s) 94, 150, 159, 369, 444, 486, 528, 618, 698
SfcI CTRYAG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 3 cut(s) 13, 138, 464
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 296, 348
StyI CCWWGG 3 cut(s) 295, 328, 347
TaaI ACNGT 3 cut(s) 118, 236, 536
TaiI ACGT 1 cut(s) 444
TaqI TCGA 5 cut(s) 32, 95, 279, 642, 690
TasI AATT 3 cut(s) 13, 138, 464
TfiI GAWTC 3 cut(s) 276, 371, 389
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 121, 633
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 2 cut(s) 121, 633
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 128
XmaJI CCTAGG 2 cut(s) 295, 347
XspI CTAG 2 cut(s) 296, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.