Rmu_co8404287.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8404287.1
OG0000172
Physical Location & Seq
Reverse (-)
2 .. 1142
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8404287.1_g000001.1.cds

Sequence Viewer

Length: 944 bp
atgactgccagattggcgaccaagttgtcgctcaaggaaggtgaagaaccggttgacttggggaatctcatggttctgggtaaggagtttttggctcgaaatttctatttggttgggaggcttaatacctgctgggggttggtgctggattcttgctggagtgctgtaaggtcgatgtggaggttgtctggtactgtggaagtccaaccacgaggagaacgttttctatttacgttcacccatgaaagggatgttgctcaagtgaagaagggtggttcgtggggttttcaacgtgccatgattcttctgaataattatgatggcttctcggagatctctgtagtgaagctggactttgtttggatctgggtgacgttggaaggcatacctccgggcattttgactgaacctactgtccggttggttggtgggacgattggcgaggtgctggaggtggatagtacggtgctgcgtcggggagatgctcgggtccagtgtgttctctctatccatgacccgcgttgccctagggtggaggactcggagactgattatgtggtggaggcgggctcgcagccggcaatgggaccgatcgttccagccctagtctttagggaaaacgttcaaccctctctttcttctccgctgctctcttccttcaaggttccaatgctgaagaggaaagctgtgcagatccgcaatctgccagtggttgagtctcccgagactgaagatacttcgactcaaacttcggtggtggggatgcgtcgtcccagagatgaggacggccctgaagaaggtttggttggtgggaagtggtctccagcttcgaaggtgtacaagaagaagggctggcctcgtggctccagagacaaggccaaagcgacaccgccggcgtcctccggtgacggttttgagtatatggcgtcggggtctcctgacgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

315

Amino Acids

34.68

Weight (kDa)

6.78

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 137
AccII CGCG 1 cut(s) 520
AciI CCGC 5 cut(s) 518, 566, 644, 697, 890
AclI AACGTT 2 cut(s) 220, 621
AclWI GGATC 2 cut(s) 371, 688
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 3 cut(s) 695, 750, 813
AcyI GRCGYC 2 cut(s) 896, 926
AfaI GTAC 3 cut(s) 193, 463, 839
AfiI CCNNNNNNNGG 6 cut(s) 135, 246, 247, 532, 584, 797
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 290, 626, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 789, 821
AloI GAACNNNNNNTCC 4 cut(s) 399, 431, 579, 611
AluBI AGCT 3 cut(s) 349, 686, 827
AluI AGCT 3 cut(s) 349, 686, 827
Alw26I GTCTC 6 cut(s) 539, 719, 723, 825, 864, 939
AlwI GGATC 2 cut(s) 371, 688
Ama87I CYCGRG 2 cut(s) 486, 722
AoxI GGCC 3 cut(s) 787, 854, 876
ApeKI GCWGC 3 cut(s) 469, 574, 646
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 2 cut(s) 222, 621
AspA2I CCTAGG 1 cut(s) 527
AspS9I GGNCC 3 cut(s) 490, 587, 788
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 53, 229, 382, 917
AsuII TTCGAA 1 cut(s) 830
AvaI CYCGRG 2 cut(s) 486, 722
AvaII GGWCC 2 cut(s) 490, 587
AvrII CCTAGG 1 cut(s) 527
BanII GRGCYC 1 cut(s) 572
BauI CACGAG 2 cut(s) 210, 858
BbvI GCAGC 3 cut(s) 456, 586, 633
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 802
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 6 cut(s) 539, 719, 723, 825, 864, 939
BfaI CTAG 2 cut(s) 528, 605
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 333
BisI GCNGC 3 cut(s) 470, 575, 647
BlnI CCTAGG 1 cut(s) 527
BlsI GCNGC 3 cut(s) 471, 576, 648
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 2 cut(s) 490, 587
BmeT110I CYCGRG 2 cut(s) 486, 722
BmgT120I GGNCC 3 cut(s) 490, 587, 788
BmiI GGNNCC 4 cut(s) 491, 588, 666, 865
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 472, 753
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 4 cut(s) 178, 470, 807, 850
Bpu14I TTCGAA 1 cut(s) 830
BpuEI CTTGAG 2 cut(s) 17, 243
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 896, 926
BsaI GGTCTC 2 cut(s) 825, 939
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 3 cut(s) 49, 417, 902
Bsc4I CCNNNNNNNGG 6 cut(s) 135, 246, 247, 532, 584, 797
Bse118I RCCGGY 3 cut(s) 49, 577, 892
Bse1I ACTGG 2 cut(s) 493, 707
Bse3DI GCAATG 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 2 cut(s) 256, 768
BseLI CCNNNNNNNGG 6 cut(s) 135, 246, 247, 532, 584, 797
BseMI GCAATG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 493, 707
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 456, 586, 633
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 520
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 3 cut(s) 789, 856, 878
BshTI ACCGGT 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 486, 722
BsiSI CCGG 6 cut(s) 50, 392, 418, 578, 893, 903
BslFI GGGAC 3 cut(s) 445, 600, 756
BslI CCNNNNNNNGG 6 cut(s) 135, 246, 247, 532, 584, 797
BsmAI GTCTC 6 cut(s) 539, 719, 723, 825, 864, 939
BsmFI GGGAC 3 cut(s) 445, 600, 756
BsnI GGCC 3 cut(s) 789, 856, 878
Bso31I GGTCTC 2 cut(s) 825, 939
BsoBI CYCGRG 2 cut(s) 486, 722
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 4 cut(s) 333, 363, 591, 693
BspACI CCGC 5 cut(s) 518, 566, 644, 697, 890
BspANI GGCC 3 cut(s) 789, 856, 878
BspFNI CGCG 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 491, 588, 666, 865
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 371, 688
BspT104I TTCGAA 1 cut(s) 830
BspTNI GGTCTC 2 cut(s) 825, 939
BsrDI GCAATG 1 cut(s) 588
BsrFI RCCGGY 3 cut(s) 49, 577, 892
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 2 cut(s) 493, 707
BssAI RCCGGY 3 cut(s) 49, 577, 892
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 4 cut(s) 333, 363, 591, 693
BssNI GRCGYC 2 cut(s) 896, 926
BssSI CACGAG 2 cut(s) 210, 858
BssT1I CCWWGG 1 cut(s) 527
Bst2BI CACGAG 2 cut(s) 210, 858
Bst4CI ACNGT 4 cut(s) 196, 415, 466, 911
Bst6I CTCTTC 2 cut(s) 658, 671
BstACI GRCGYC 2 cut(s) 896, 926
BstAUI TGTACA 1 cut(s) 837
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 5 cut(s) 568, 572, 579, 854, 894
BstENI CCTNNNNNAGG 1 cut(s) 795
BstF5I GGATG 2 cut(s) 256, 768
BstFNI CGCG 1 cut(s) 520
BstKTI GATC 4 cut(s) 336, 366, 594, 696
BstMAI GTCTC 6 cut(s) 539, 719, 723, 825, 864, 939
BstMBI GATC 4 cut(s) 333, 363, 591, 693
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 520
BstV1I GCAGC 3 cut(s) 456, 586, 633
BstX2I RGATCY 3 cut(s) 333, 363, 693
BstYI RGATCY 3 cut(s) 333, 363, 693
BsuRI GGCC 3 cut(s) 789, 856, 878
BtsCI GGATG 2 cut(s) 256, 768
BtsIMutI CAGTG 2 cut(s) 500, 714
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 5 cut(s) 568, 572, 579, 854, 894
Cfr10I RCCGGY 3 cut(s) 49, 577, 892
Cfr13I GGNCC 3 cut(s) 490, 587, 788
CseI GACGC 4 cut(s) 461, 755, 885, 915
Csp6I GTAC 3 cut(s) 192, 462, 838
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 4 cut(s) 70, 242, 298, 512
CviQI GTAC 3 cut(s) 192, 462, 838
DpnI GATC 4 cut(s) 335, 365, 593, 695
DpnII GATC 4 cut(s) 333, 363, 591, 693
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 658, 671
EarI CTCTTC 2 cut(s) 658, 671
Eco130I CCWWGG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 572
Eco31I GGTCTC 2 cut(s) 825, 939
Eco47I GGWCC 2 cut(s) 490, 587
Eco57I CTGAAG 3 cut(s) 695, 750, 813
Eco88I CYCGRG 2 cut(s) 486, 722
EcoNI CCTNNNNNAGG 1 cut(s) 795
EcoT14I CCWWGG 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 4 cut(s) 73, 245, 301, 515
FaiI YATR 9 cut(s) 71, 243, 299, 318, 386, 513, 555, 921, 923
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 3 cut(s) 445, 600, 756
FatI CATG 4 cut(s) 69, 241, 297, 511
FauI CCCGC 2 cut(s) 525, 559
Fnu4HI GCNGC 3 cut(s) 470, 575, 647
FokI GGATG 2 cut(s) 263, 775
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 3 cut(s) 470, 575, 647
FspBI CTAG 2 cut(s) 528, 605
GluI GCNGC 3 cut(s) 470, 575, 647
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 4 cut(s) 178, 470, 807, 850
HaeIII GGCC 3 cut(s) 789, 856, 878
HapII CCGG 6 cut(s) 50, 392, 418, 578, 893, 903
HgaI GACGC 4 cut(s) 461, 755, 885, 915
Hin1I GRCGYC 2 cut(s) 896, 926
Hin1II CATG 4 cut(s) 73, 245, 301, 515
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 6 cut(s) 64, 149, 301, 539, 716, 742
HpaII CCGG 6 cut(s) 50, 392, 418, 578, 893, 903
HphI GGTGA 4 cut(s) 53, 229, 382, 917
Hpy166II GTNNAC 3 cut(s) 55, 237, 838
Hpy188I TCNGA 3 cut(s) 309, 331, 544
Hpy188III TCNNGA 3 cut(s) 722, 867, 938
Hpy8I GTNNAC 3 cut(s) 55, 237, 838
Hpy99I CGWCG 3 cut(s) 477, 771, 931
HpyAV CCTTC 7 cut(s) 32, 262, 374, 667, 791, 826, 841
HpyCH4III ACNGT 4 cut(s) 196, 415, 466, 911
HpyCH4IV ACGT 5 cut(s) 220, 233, 292, 374, 621
HpyCH4V TGCA 1 cut(s) 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 5 cut(s) 220, 233, 292, 374, 621
Hsp92I GRCGYC 2 cut(s) 896, 926
Hsp92II CATG 4 cut(s) 73, 245, 301, 515
KroI GCCGGC 2 cut(s) 577, 892
KroNI GCCGGC 2 cut(s) 579, 894
Kzo9I GATC 4 cut(s) 333, 363, 591, 693
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 3 cut(s) 456, 586, 633
LweI GCATC 2 cut(s) 472, 753
MaeI CTAG 2 cut(s) 528, 605
MaeII ACGT 5 cut(s) 220, 233, 292, 374, 621
MaeIII GTNAC 2 cut(s) 370, 905
MalI GATC 4 cut(s) 335, 365, 593, 695
MboI GATC 4 cut(s) 333, 363, 591, 693
MboII GAAGA 9 cut(s) 56, 277, 296, 630, 645, 688, 743, 806, 856
MflI RGATCY 3 cut(s) 333, 363, 693
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 2 cut(s) 100, 313
MlyI GAGTC 3 cut(s) 533, 725, 736
MmeI TCCRAC 2 cut(s) 229, 357
MreI CGCCGGCG 1 cut(s) 892
MroNI GCCGGC 2 cut(s) 577, 892
MroXI GAANNNNTTC 2 cut(s) 222, 621
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 6 cut(s) 50, 392, 418, 578, 893, 903
MspR9I CCNGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 14
NaeI GCCGGC 2 cut(s) 579, 894
NciI CCSGG 1 cut(s) 393
NdeII GATC 4 cut(s) 333, 363, 591, 693
NgoMIV GCCGGC 2 cut(s) 577, 892
NlaIII CATG 4 cut(s) 73, 245, 301, 515
NlaIV GGNNCC 4 cut(s) 491, 588, 666, 865
NmuCI GTSAC 2 cut(s) 370, 905
NspV TTCGAA 1 cut(s) 830
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdiI GCCGGC 2 cut(s) 579, 894
PdmI GAANNNNTTC 2 cut(s) 222, 621
PfeI GAWTC 3 cut(s) 64, 149, 301
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 3 cut(s) 471, 576, 648
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 3 cut(s) 533, 724, 736
PpsI GAGTC 3 cut(s) 533, 724, 736
Psp1406I AACGTT 2 cut(s) 220, 621
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 491, 588, 666, 865
PspPI GGNCC 3 cut(s) 490, 587, 788
PsuI RGATCY 3 cut(s) 333, 363, 693
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 3 cut(s) 193, 463, 839
RsaNI GTAC 3 cut(s) 192, 462, 838
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 470, 575, 647
Sau3AI GATC 4 cut(s) 333, 363, 591, 693
Sau96I GGNCC 3 cut(s) 490, 587, 788
SchI GAGTC 3 cut(s) 533, 725, 736
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 2 cut(s) 472, 753
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 830
SgrAI CRCCGGYG 1 cut(s) 892
SinI GGWCC 2 cut(s) 490, 587
SmlI CTYRAG 2 cut(s) 32, 258
SmoI CTYRAG 2 cut(s) 32, 258
Sse9I AATT 2 cut(s) 100, 313
SsiI CCGC 5 cut(s) 518, 566, 644, 697, 890
SspMI CTAG 2 cut(s) 528, 605
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 196, 415, 466, 911
TaiI ACGT 5 cut(s) 223, 236, 295, 377, 624
TaqI TCGA 4 cut(s) 97, 173, 740, 830
TaqII GACCGA 1 cut(s) 604
TasI AATT 2 cut(s) 100, 313
TatI WGTACW 1 cut(s) 837
TfiI GAWTC 3 cut(s) 64, 149, 301
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 500, 714
TseFI GTSAC 2 cut(s) 370, 905
TseI GCWGC 3 cut(s) 469, 574, 646
Tsp45I GTSAC 2 cut(s) 370, 905
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 2 cut(s) 500, 714
VpaK11BI GGWCC 2 cut(s) 490, 587
XagI CCTNNNNNAGG 1 cut(s) 795
XapI RAATTY 1 cut(s) 100
XmaJI CCTAGG 1 cut(s) 527
XmnI GAANNNNTTC 2 cut(s) 222, 621
XspI CTAG 2 cut(s) 528, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.