pycom08g20050

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000172
Physical Location & Seq
Forward (+)
19946576 .. 19949339
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20050.4

Sequence Viewer

Length: 576 bp
ATGCAATTTAAGTACGCAGTGAAGGCCCACGCCACACAACTCTTCCTCCTCCAACTCCATCTCTCGCTCGCTCGCTCGCTTTCTGTCTATTTTCTCTCTCTGTTTGCTGCGCCGCCGCCACCGGTCCACCACCACCCCAAAGCACTGGTGGACGCCATCTCCGCCTCCACCATCTCCGCCGTATACAGGCTTCACCGTAACAGAGATTCGAGAAAAGGGGCGTTGAGAGGAGTGTGGCAATTGAAAAAACTGGTTGTGAGCTATTCTGATTGGGGAGGAAGCAGTAGGGGCATCAGATCATTTATGGAGACATATCTACCGACATTTAAGGAGAAGAATCCTCAGCTAGAGGTGATTACTGAACTCATCCGCGGTCAGCACCCACATCTGAAGGGCTTATACAAGAACAAGACTGAAAAGGTGGTATGTGTGAAGAACATGGATTCAGAAGAGGTTCTTCAATATGCAAACAGGCTAAGAAACCAACTGGGGAGAAAAGTGGTGAAGCTGAAGACTAGACATGTAACCAAACATCCCAGCGTGCAAGGTACCTGGACAACAGACGTAAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

192

Amino Acids

21.88

Weight (kDa)

10.31

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 372
AciI CCGC 6 cut(s) 113, 116, 162, 177, 370, 372
AcuI CTGAAG 2 cut(s) 410, 530
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 14, 550
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 121
AgsI TTSAA 2 cut(s) 244, 461
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 3 cut(s) 261, 346, 508
AluI AGCT 3 cut(s) 261, 346, 508
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 107
AsiGI ACCGGT 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 453
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 25, 124
AsuHPI GGTGA 3 cut(s) 185, 364, 514
AvaII GGWCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 548
BarI GAAGNNNNNNTAC 4 cut(s) 174, 206, 383, 415
BbsI GAAGAC 1 cut(s) 518
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 66, 164, 179
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 347, 516
BisI GCNGC 3 cut(s) 108, 113, 116
BlsI GCNGC 3 cut(s) 109, 114, 117
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 25, 124
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 1 cut(s) 553
BmrI ACTGGG 1 cut(s) 497
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 150, 255, 492
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 366, 532
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 3 cut(s) 150, 255, 492
BseRI GAGGAG 2 cut(s) 38, 243
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 548
BshTI ACCGGT 1 cut(s) 121
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 6 cut(s) 113, 116, 162, 177, 370, 372
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 3 cut(s) 150, 255, 492
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 1 cut(s) 296
BssNAI GTATAC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 2 cut(s) 47, 444
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 69, 73, 77, 542
BstDEI CTNAG 2 cut(s) 342, 476
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 366, 532
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 3 cut(s) 23, 161, 288
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 551
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 2 cut(s) 366, 532
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 143
Cac8I GCNNGC 4 cut(s) 69, 73, 77, 542
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 25, 124
Cfr42I CCGCGG 1 cut(s) 373
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 13, 549
CspAI ACCGGT 1 cut(s) 121
CviAII CATG 2 cut(s) 439, 521
CviJI RGCY 7 cut(s) 26, 190, 261, 346, 396, 475, 508
CviKI_1 RGCY 7 cut(s) 26, 190, 261, 346, 396, 475, 508
CviQI GTAC 2 cut(s) 13, 549
DdeI CTNAG 2 cut(s) 342, 476
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 47, 444
EarI CTCTTC 2 cut(s) 47, 444
EciI GGCGGA 2 cut(s) 151, 166
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 410, 530
EcoRII CCWGG 1 cut(s) 551
FaeI CATG 2 cut(s) 442, 524
FaiI YATR 8 cut(s) 184, 305, 313, 400, 427, 440, 465, 522
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 438, 520
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 108, 113, 116
FokI GGATG 2 cut(s) 353, 519
Fsp4HI GCNGC 3 cut(s) 108, 113, 116
FspBI CTAG 2 cut(s) 347, 516
GlaI GCGC 1 cut(s) 111
GluI GCNGC 3 cut(s) 108, 113, 116
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 442, 524
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 206, 337, 443
HpaII CCGG 1 cut(s) 122
HphI GGTGA 3 cut(s) 185, 364, 514
Hpy166II GTNNAC 3 cut(s) 127, 151, 184
Hpy188I TCNGA 4 cut(s) 268, 296, 390, 448
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 3 cut(s) 127, 151, 184
HpyAV CCTTC 2 cut(s) 16, 385
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 3 cut(s) 4, 467, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 161, 288
HpyF3I CTNAG 2 cut(s) 342, 476
HpySE526I ACGT 1 cut(s) 564
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 442, 524
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 552
KspI CCGCGG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 296
LpnPI CCDG 9 cut(s) 131, 135, 172, 236, 457, 473, 538, 550, 565
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 347, 516
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 2 cut(s) 197, 523
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 6 cut(s) 34, 346, 445, 449, 461, 523
MfeI CAATTG 1 cut(s) 239
MluCI AATT 2 cut(s) 5, 239
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 8 cut(s) 56, 59, 175, 221, 269, 343, 351, 445
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 2 cut(s) 9, 327
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 553
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 23, 161, 288
NdeII GATC 1 cut(s) 296
NlaIII CATG 2 cut(s) 442, 524
NlaIV GGNNCC 1 cut(s) 550
NspI RCATGY 1 cut(s) 524
PciI ACATGT 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 206, 337, 443
PinAI ACCGGT 1 cut(s) 121
PkrI GCNGC 3 cut(s) 109, 114, 117
PscI ACATGT 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 2 cut(s) 25, 124
RsaI GTAC 2 cut(s) 14, 550
RsaNI GTAC 2 cut(s) 13, 549
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 9, 327
SatI GCNGC 3 cut(s) 108, 113, 116
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 2 cut(s) 25, 124
ScrFI CCNGG 1 cut(s) 553
SetI ASST 9 cut(s) 263, 348, 354, 423, 456, 510, 550, 554, 567
SfaNI GCATC 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 1 cut(s) 124
Sse9I AATT 2 cut(s) 5, 239
SsiI CCGC 6 cut(s) 113, 116, 162, 177, 370, 372
SspMI CTAG 2 cut(s) 347, 516
StyD4I CCNGG 1 cut(s) 551
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 5, 239
TauI GCSGC 2 cut(s) 115, 118
TfiI GAWTC 3 cut(s) 206, 337, 443
Tru1I TTAA 2 cut(s) 9, 327
Tru9I TTAA 2 cut(s) 9, 327
TscAI CASTG 2 cut(s) 24, 150
TseI GCWGC 1 cut(s) 107
TspRI CASTG 2 cut(s) 24, 150
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 2 cut(s) 347, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.