Rmu_sc0018485.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018485.1
OG0000172
Physical Location & Seq
Reverse (-)
14627 .. 18010
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018485.1_g000006.1.cds

Sequence Viewer

Length: 861 bp
atggaacgaaagcaagaaaatcgacaatcacagaataaggagaaagaaactcacagatcgggatttcgagcctccccgcgtctccgatgtgtgaatatatggtttagagtgtgtaggcgtctcagcgtcacagctatggcagaggagaggaagaaagaaggaggccgatatggttcatattgggatttcgagcctctccgcgtctccacttcacggcatctccgcatcacggcgtcttctagtcacggcattggcagaggagaagagatggaggcggttgatctatgtgaaaggctgaaagcggcagatcgggttagtcgtttagaaatgaaggctgaagagttgaagattaggaggcaccctactgagcatcgatctcttgtcactgggattggtgatgcaagctctttcatcgagtcaaccgccttcatcgaccgcgacccctccctcaagtccctcatctcctgcctcgacctcaccgccaaccccaactcccgatccctgccgaactccgcttctcctatcaccctctaccgccgccgccgccaacccaacccatcctcttcaatttctcagcatccaaccaccgagctcgaagaagaagcagacctagaagaagatttaagaactttcagaactatcataatcacaggaaacgatggtctacagttagagatatctggatcgaaagtttcggtggccggaaaaattccagaatccggcgagcttgagttcgacgtaaaaacttccaccaatggcttcgattacttctggagatttgttcagaaactcaaggcgatcccctcagttcaagaatcacaagaaatggtgatctgtagctcgagatatccgggtcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.57

Weight (kDa)

8.96

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 1 cut(s) 664
AccII CGCG 3 cut(s) 79, 201, 438
AclWI GGATC 3 cut(s) 492, 691, 793
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 2 cut(s) 118, 233
AfiI CCNNNNNNNGG 3 cut(s) 213, 229, 719
AgsI TTSAA 3 cut(s) 346, 567, 812
AluBI AGCT 5 cut(s) 134, 405, 592, 727, 840
AluI AGCT 5 cut(s) 134, 405, 592, 727, 840
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 3 cut(s) 86, 125, 208
AlwI GGATC 3 cut(s) 492, 691, 793
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 2 cut(s) 163, 699
ApoI RAATTY 1 cut(s) 708
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 4 cut(s) 407, 469, 517, 841
AvaI CYCGRG 1 cut(s) 841
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 594
BccI CCATC 3 cut(s) 262, 565, 653
BceAI ACGGC 3 cut(s) 230, 246, 262
BcgI CGANNNNNNTGC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 3 cut(s) 86, 125, 208
BfaI CTAG 2 cut(s) 240, 611
BfmI CTRYAG 2 cut(s) 665, 835
BisI GCNGC 4 cut(s) 303, 538, 541, 544
BlsI GCNGC 4 cut(s) 304, 539, 542, 545
Bme1390I CCNGG 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 841
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 852
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 5 cut(s) 226, 234, 379, 388, 586
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 793
BpuEI CTTGAG 3 cut(s) 434, 749, 776
BpuMI CCSGG 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 373
BsaHI GRCGYC 2 cut(s) 118, 233
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 229, 719
Bse1I ACTGG 1 cut(s) 391
BseCI ATCGAT 1 cut(s) 373
BseGI GGATG 2 cut(s) 557, 577
BseLI CCNNNNNNNGG 3 cut(s) 213, 229, 719
BseMII CTCAG 4 cut(s) 136, 357, 587, 819
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 158, 273
Bsh1236I CGCG 3 cut(s) 79, 201, 438
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 2 cut(s) 165, 701
BshNI GGYRCC 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 3 cut(s) 702, 720, 851
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 213, 229, 719
BsmAI GTCTC 3 cut(s) 86, 125, 208
BsmBI CGTCTC 3 cut(s) 86, 125, 208
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 165, 701
BsoBI CYCGRG 1 cut(s) 841
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
BspANI GGCC 2 cut(s) 165, 701
BspCNI CTCAG 4 cut(s) 135, 358, 586, 818
BspDI ATCGAT 1 cut(s) 373
BspFNI CGCG 3 cut(s) 79, 201, 438
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 3 cut(s) 492, 691, 793
BspT107I GGYRCC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 391
BssMI GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
BssNI GRCGYC 2 cut(s) 118, 233
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 3 cut(s) 258, 333, 568
BstACI GRCGYC 2 cut(s) 118, 233
BstC8I GCNNGC 2 cut(s) 403, 725
BstDEI CTNAG 4 cut(s) 122, 366, 573, 805
BstF5I GGATG 2 cut(s) 557, 577
BstFNI CGCG 3 cut(s) 79, 201, 438
BstKTI GATC 8 cut(s) 59, 283, 310, 377, 500, 686, 801, 834
BstMAI GTCTC 3 cut(s) 86, 125, 208
BstMBI GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 2 cut(s) 665, 835
BstUI CGCG 3 cut(s) 79, 201, 438
BstV2I GAAGAC 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 373
BsuRI GGCC 2 cut(s) 165, 701
BsuTUI ATCGAT 1 cut(s) 373
BtsCI GGATG 2 cut(s) 557, 577
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 403, 725
ClaI ATCGAT 1 cut(s) 373
CseI GACGC 5 cut(s) 68, 107, 115, 190, 222
DdeI CTNAG 4 cut(s) 122, 366, 573, 805
DpnI GATC 8 cut(s) 58, 282, 309, 376, 499, 685, 800, 833
DpnII GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
EaeI YGGCCR 1 cut(s) 699
Eam1104I CTCTTC 3 cut(s) 258, 333, 568
EarI CTCTTC 3 cut(s) 258, 333, 568
Ecl136II GAGCTC 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 594
Eco32I GATATC 2 cut(s) 678, 848
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 592
EcoRV GATATC 2 cut(s) 678, 848
EcoT38I GRGCYC 1 cut(s) 594
Esp3I CGTCTC 3 cut(s) 86, 125, 208
FaiI YATR 7 cut(s) 98, 100, 137, 171, 178, 286, 644
FaqI GGGAC 1 cut(s) 439
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 4 cut(s) 303, 538, 541, 544
FokI GGATG 2 cut(s) 544, 564
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 4 cut(s) 303, 538, 541, 544
FspBI CTAG 2 cut(s) 240, 611
GluI GCNGC 4 cut(s) 303, 538, 541, 544
GsuI CTGGAG 1 cut(s) 793
HaeIII GGCC 2 cut(s) 165, 701
HapII CCGG 3 cut(s) 702, 720, 851
HgaI GACGC 5 cut(s) 68, 107, 115, 190, 222
Hin1I GRCGYC 2 cut(s) 118, 233
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 3 cut(s) 416, 716, 815
HpaII CCGG 3 cut(s) 702, 720, 851
HphI GGTGA 4 cut(s) 407, 469, 517, 841
Hpy166II GTNNAC 2 cut(s) 420, 665
Hpy188I TCNGA 3 cut(s) 86, 635, 786
Hpy188III TCNNGA 7 cut(s) 60, 495, 681, 713, 772, 812, 843
Hpy8I GTNNAC 2 cut(s) 420, 665
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 3 cut(s) 152, 325, 436
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 4 cut(s) 122, 366, 573, 805
HpySE526I ACGT 1 cut(s) 738
Hsp92I GRCGYC 2 cut(s) 118, 233
Kzo9I GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
LpnPI CCDG 9 cut(s) 372, 478, 515, 636, 666, 715, 726, 733, 757
LweI GCATC 5 cut(s) 226, 234, 379, 388, 586
MaeI CTAG 2 cut(s) 240, 611
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 3 cut(s) 127, 242, 382
MalI GATC 8 cut(s) 58, 282, 309, 376, 499, 685, 800, 833
MboI GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 2 cut(s) 567, 708
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 605
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 3 cut(s) 702, 720, 851
MspR9I CCNGG 1 cut(s) 852
MvnI CGCG 3 cut(s) 79, 201, 438
MwoI GCNNNNNNNGC 1 cut(s) 543
NciI CCSGG 1 cut(s) 852
NdeII GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 3 cut(s) 127, 242, 382
PaeR7I CTCGAG 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PfeI GAWTC 2 cut(s) 716, 815
PkrI GCNGC 4 cut(s) 304, 539, 542, 545
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 4 cut(s) 303, 538, 541, 544
Sau3AI GATC 8 cut(s) 56, 280, 307, 374, 497, 683, 798, 831
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 1 cut(s) 594
SetI ASST 8 cut(s) 136, 407, 477, 594, 612, 729, 741, 842
SfaNI GCATC 5 cut(s) 226, 234, 379, 388, 586
SfcI CTRYAG 2 cut(s) 665, 835
Sfr274I CTCGAG 1 cut(s) 841
SlaI CTCGAG 1 cut(s) 841
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 4 cut(s) 449, 728, 791, 841
SmoI CTYRAG 4 cut(s) 449, 728, 791, 841
Sse9I AATT 2 cut(s) 567, 708
SspMI CTAG 2 cut(s) 240, 611
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 850
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 1 cut(s) 741
TasI AATT 2 cut(s) 567, 708
TauI GCSGC 4 cut(s) 305, 540, 543, 546
TfiI GAWTC 2 cut(s) 716, 815
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 3 cut(s) 127, 242, 382
Tsp45I GTSAC 3 cut(s) 127, 242, 382
TspDTI ATGAA 4 cut(s) 165, 344, 400, 418
TspRI CASTG 1 cut(s) 391
XapI RAATTY 1 cut(s) 708
XhoI CTCGAG 1 cut(s) 841
XmiI GTMKAC 1 cut(s) 664
XspI CTAG 2 cut(s) 240, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.