RLG00000012718

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000172
Physical Location & Seq
Forward (+)
21597155 .. 21597668
514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012718

Sequence Viewer

Length: 432 bp
ATGATGTGCGAAGGGGTGACCAGACTACCGTCTTTGGTCTTCCGCACCAACTCCTCGACTCCATCATCTCTAGGTCTTTTAGGACCTAGATTTCGGGGCATCGATGGTAAGGGGAGGAAGCCAGTGGTTTATCAGAAGAGGTTGAACAAAGAATCGGAGCAGAGTAAGAAGACATCGACGATAGGGGTGGAGAGTTCCAGGGAAGGGAAGTGGTCGAGAAGATTTATAAGGAGCAAGGGGGTCGCATCGAGCAAGAGAAGAGGAGGAAGGTCCGTAGCCCAAGCGCAATCACCATGCACTATCACTGGCCCCTGCAATGCTAGAAGAGGAAAACTTGGGGTTGACTTGGTCTGCAGAAGGGCTCTTGAAGGATTTGTGTGTGTTAGACAAGAAGAAGCTCGAGGCAGGCCTCTGGGTAGTCGTAAGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.7

Weight (kDa)

11.43

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AciI CCGC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 145, 368
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 2 cut(s) 307, 407
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 83, 270, 308
AsuHPI GGTGA 2 cut(s) 28, 282
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 83, 270
BanII GRGCYC 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 31, 176
BccI CCATC 2 cut(s) 70, 98
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 3 cut(s) 71, 87, 321
BfmI CTRYAG 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 2 cut(s) 83, 270
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 3 cut(s) 83, 270, 308
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 108, 254
BoxI GACNNNNGTC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 31, 176
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 122, 310
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 122, 310
BseRI GAGGAG 2 cut(s) 43, 276
BshFI GGCC 2 cut(s) 309, 409
BshVI ATCGAT 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 204
BsnI GGCC 2 cut(s) 309, 409
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 364
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 309, 409
BspDI ATCGAT 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 2 cut(s) 122, 310
BssECI CCNNGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 3 cut(s) 131, 253, 319
BstC8I GCNNGC 1 cut(s) 407
BstEII GGTNACC 1 cut(s) 16
BstHHI GCGC 1 cut(s) 286
BstNI CCWGG 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 31, 176
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 309, 409
BsuTUI ATCGAT 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 129, 303
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 83, 270, 308
ClaI ATCGAT 1 cut(s) 102
CviAII CATG 1 cut(s) 294
CviJI RGCY 6 cut(s) 121, 278, 309, 362, 398, 409
CviKI_1 RGCY 6 cut(s) 121, 278, 309, 362, 398, 409
Eam1104I CTCTTC 3 cut(s) 131, 253, 319
EarI CTCTTC 3 cut(s) 131, 253, 319
Eco147I AGGCCT 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 83, 270
Eco88I CYCGRG 1 cut(s) 399
Eco91I GGTNACC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 1 cut(s) 297
FaiI YATR 2 cut(s) 227, 295
FatI CATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 364
FspBI CTAG 3 cut(s) 71, 87, 321
GlaI GCGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 309, 409
HhaI GCGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 2 cut(s) 58, 152
HphI GGTGA 2 cut(s) 28, 282
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 135, 157
Hpy188III TCNNGA 2 cut(s) 216, 365
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 5 cut(s) 5, 197, 261, 351, 362
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 297, 315, 354
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 157, 231
LpnPI CCDG 8 cut(s) 34, 135, 184, 211, 291, 325, 391, 398
LweI GCATC 2 cut(s) 108, 254
MaeI CTAG 3 cut(s) 71, 87, 321
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 7 cut(s) 31, 148, 181, 231, 270, 336, 404
MhlI GDGCHC 1 cut(s) 364
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 8 cut(s) 64, 108, 132, 254, 257, 320, 395, 420
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 409
PfeI GAWTC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 347
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 83
PshAI GACNNNNGTC 1 cut(s) 28
PsiI TTATAA 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 16
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 3 cut(s) 83, 270, 308
PspPPI RGGWCCY 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 347
Sau96I GGNCC 3 cut(s) 83, 270, 308
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 364
SetI ASST 5 cut(s) 76, 88, 143, 272, 400
SfaNI GCATC 2 cut(s) 108, 254
SfcI CTRYAG 1 cut(s) 352
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 83, 270
SlaI CTCGAG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 1 cut(s) 43
SspMI CTAG 3 cut(s) 71, 87, 321
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 6 cut(s) 56, 102, 176, 215, 248, 400
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 2 cut(s) 129, 310
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 2 cut(s) 129, 310
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 83, 270
XhoI CTCGAG 1 cut(s) 399
XspI CTAG 3 cut(s) 71, 87, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.