Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

15716957 .. 15717755

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12002.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTTTCAGGGATAACTCGGCCCCAAACCTAATTGTTCCCAACTCGCCCACTTTGGCTTCCCTCTTTCCGAAAGAGAAAAGGGTTGTGCAAATTCATGATGTTCCGGCGTTTCCTTCGCCAGCCAAAGTAGCCGGAGTGCGGCAGAGCAGGGAGGAGGAGGTGACTCATGTTGGAAAACGTGCACGACATGCGCTGACCTTTGATCCTCTGCCTTTGAATCCGGAGGAATTGGGGTTCTCTATTGCTGATGGGGGTGCCCTTGGTATCAAGAAGACAGGTAAATCTCCAAAGAAAAAAGGAAGGCCGAGGGGAAGCCGAAATAAGAAGAATTTGCAGGTGGGACTCCATGGAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

120

Amino Acids

12.89

Weight (kDa)

10.61

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	93, 331
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	220
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
Alw21I	GWGCWC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	2 cut(s)	21, 305
ApaLI	GTGCAC	1 cut(s)	183
ApoI	RAATTY	2 cut(s)	93, 331
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	175
BaeGI	GKGCMC	2 cut(s)	187, 262
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	187
BccI	CCATC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	3 cut(s)	24, 259, 355
BpiI	GAAGAC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	262, 308, 349
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	262, 308, 349
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	170, 173
BseSI	GKGCMC	2 cut(s)	187, 262
BshFI	GGCC	2 cut(s)	23, 307
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	3 cut(s)	107, 135, 224
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	2 cut(s)	23, 307
Bsp1286I	GDGCHC	2 cut(s)	187, 262
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	23, 307
BspEI	TCCGGA	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	24, 259, 355
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	262, 308, 349
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	262, 349
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 191
BstNSI	RCATGY	1 cut(s)	194
BstSLI	GKGCMC	2 cut(s)	187, 262
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	23, 307
BtgI	CCRYGG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	22
CviAII	CATG	4 cut(s)	98, 170, 191, 350
CviJI	RGCY	6 cut(s)	23, 59, 125, 134, 307, 318
CviKI_1	RGCY	6 cut(s)	23, 59, 125, 134, 307, 318
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	262, 349
EcoT14I	CCWWGG	2 cut(s)	262, 349
ErhI	CCWWGG	2 cut(s)	262, 349
FaeI	CATG	4 cut(s)	101, 173, 194, 353
FaiI	YATR	4 cut(s)	99, 171, 192, 351
FatI	CATG	4 cut(s)	97, 169, 190, 349
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	23, 307
HapII	CCGG	3 cut(s)	107, 135, 224
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	101, 173, 194, 353
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	166, 220, 345
HpaII	CCGG	3 cut(s)	107, 135, 224
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	98, 224, 271
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	126, 297
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	91, 185, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 191
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	101, 173, 194, 353
HspAI	GCGC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	7 cut(s)	120, 135, 136, 148, 237, 264, 323
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	286, 340
MhlI	GDGCHC	2 cut(s)	187, 262
MluCI	AATT	4 cut(s)	33, 93, 230, 331
MlyI	GAGTC	2 cut(s)	160, 339
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	74, 148, 151, 154, 219, 220, 303
MroI	TCCGGA	1 cut(s)	223
MspI	CCGG	3 cut(s)	107, 135, 224
MwoI	GCNNNNNNNGC	2 cut(s)	131, 191
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	4 cut(s)	101, 173, 194, 353
NlaIV	GGNNCC	3 cut(s)	24, 259, 355
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	194
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	2 cut(s)	160, 339
PpsI	GAGTC	2 cut(s)	160, 339
PspN4I	GGNNCC	3 cut(s)	24, 259, 355
PspPI	GGNCC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	2 cut(s)	160, 339
SduI	GDGCHC	2 cut(s)	187, 262
SetI	ASST	7 cut(s)	33, 165, 184, 203, 283, 342, 359
Sse9I	AATT	4 cut(s)	33, 93, 230, 331
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	262, 349
TaiI	ACGT	1 cut(s)	184
TasI	AATT	4 cut(s)	33, 93, 230, 331
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	93, 331
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.