Rh2DG579500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000172
Physical Location & Seq
Reverse (-)
80996868 .. 80997128
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG579500.1

Sequence Viewer

Length: 261 bp
ATGAAGCTGCAGGCTGAGAACTTTGGGCTGTCGTCTGAAGGTTTGTTCGAGATCTCCGTTACGTCATCGGAGAAAGGGGTGAAGAAAAGAGGCAGACCTCGTGGTCAGAGGAACAAACTCAAACTTGCTGTTGATTCAAAGAGCTCAGAGTCTATGGCAACCAGCTCTGTGGGTACGGACGTGGACACCCTTGCAGCTGTTGGTGTGATGCAGGAACCCTTTCCCAGGAGGGTTAGGGACAATAGCTTTACATTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.39

Weight (kDa)

9.86

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 138
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 5 cut(s) 7, 144, 165, 197, 246
AluI AGCT 5 cut(s) 7, 144, 165, 197, 246
Alw21I GWGCWC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 7, 194
Asp700I GAANNNNTTC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 91
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanII GRGCYC 1 cut(s) 146
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 8
BglII AGATCT 1 cut(s) 51
BisI GCNGC 2 cut(s) 8, 195
BlsI GCNGC 2 cut(s) 9, 196
Bme1390I CCNGG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 6, 159
BseXI GCAGC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 146
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 7, 158
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 15, 145
BstENI CCTNNNNNAGG 1 cut(s) 223
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 51
BtrI CACGTC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 7 cut(s) 7, 14, 28, 144, 165, 197, 246
CviKI_1 RGCY 7 cut(s) 7, 14, 28, 144, 165, 197, 246
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 2 cut(s) 15, 145
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DrdI GACNNNNNNGTC 1 cut(s) 102
DseDI GACNNNNNNGTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 144
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 146
FaiI YATR 1 cut(s) 155
FaqI GGGAC 1 cut(s) 251
Fnu4HI GCNGC 2 cut(s) 8, 195
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 8, 195
GluI GCNGC 2 cut(s) 8, 195
HinfI GANTC 2 cut(s) 134, 149
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 37, 70, 108, 148
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 62, 180
HpyCH4V TGCA 3 cut(s) 10, 194, 211
HpyF3I CTNAG 2 cut(s) 15, 145
HpySE526I ACGT 2 cut(s) 62, 180
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 175, 197, 211, 238
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 198
MaeII ACGT 2 cut(s) 62, 180
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 94
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 146
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 4 cut(s) 83, 102, 108, 222
MroXI GAANNNNTTC 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
NdeII GATC 1 cut(s) 51
NlaIV GGNNCC 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 9, 196
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 146
SatI GCNGC 2 cut(s) 8, 195
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 146
SetI ASST 9 cut(s) 9, 43, 65, 100, 146, 167, 183, 199, 248
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 2 cut(s) 65, 183
TaqI TCGA 1 cut(s) 48
TfiI GAWTC 1 cut(s) 134
TseI GCWGC 2 cut(s) 7, 194
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 46, 191
XagI CCTNNNNNAGG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.