Rroxscaffold_1G00006060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000172
Physical Location & Seq
Forward (+)
8088245 .. 8095541
7297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006060.1

Sequence Viewer

Length: 759 bp
ATGTCCATGGATGTGATTAAAAAGGAACGCGTAAGAGTGGAACGCGCTGCACGCACCCTTAGGGTTCTAAGGTGTCGTTCTATTTCGATCGTGCTCGACTGCTCGTCCGGCGGCACACAGAACTGCTGGACTGGCCTCTGGCCTTCCTGTCGTTTGTGGTTCGCCACCGGACGGGTCATCAGGTCTAAGGCTCTGGACAGTTTTCTTGGGATCGCGGCTGCTCGAAGCATTGGCAGACGATTCGACGATTGGCTGGTTGATTCTCTTTGGATCACAGTGGCCGGTTGTTCGGTTTCTGGGCTGTGTGCGGCAGCTTGGAATGGGAGGAGGTTGGATCGCGATCCTCTTTACTTCCAAGCAGGGACACCGACCTCTGATGGACGCATCGATTTGGTTTTTCCGGTGAACTCATTTCGAGTTTGCTTGGTTTTCCAGTTTGGGGTTCATGGGTGGTTGGAGGTGCTCCGTTGTGGGCACCCGCAATTGGCAATGACGCGCTCTGGCGGGGCTGGTTTCAGTGGCGGCGCTGGAATAGGGCATGTTTGGCTGCTGCGCAAAGGAATGGAGTCGGGCCTAAATGGTGGCAAATGGACCAAGAACAACTTGGCGCTGGCTCCTACAAGTCTCCAATCCGATGACCTTGGGCTGACTTTATCTTCGCAGGGTTTGGTTGAGGTGACCATTACCTCGGCCAAGAAAGTGAAAAAACGAGGCACGCAGACCCCGTGTTTGGAGGAACAACCCCAAACATATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.52

Weight (kDa)

9.65

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 474
AccII CGCG 5 cut(s) 30, 45, 215, 339, 496
AciI CCGC 6 cut(s) 111, 215, 308, 479, 504, 522
AclWI GGATC 4 cut(s) 218, 278, 335, 342
AcoI YGGCCR 2 cut(s) 279, 690
AfiI CCNNNNNNNGG 4 cut(s) 171, 439, 484, 730
AflIII ACRYGT 1 cut(s) 28
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 2 cut(s) 96, 465
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 4 cut(s) 218, 278, 335, 342
AoxI GGCC 5 cut(s) 133, 140, 279, 571, 690
ApeKI GCWGC 5 cut(s) 47, 218, 311, 547, 550
ArsI GACNNNNNNTTYG 4 cut(s) 640, 672, 712, 744
AspLEI GCGC 5 cut(s) 47, 498, 527, 555, 610
AspS9I GGNCC 2 cut(s) 571, 591
AsuHPI GGTGA 2 cut(s) 415, 688
AvaII GGWCC 1 cut(s) 591
AxyI CCTNAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 96, 465
BbvI GCAGC 5 cut(s) 34, 205, 323, 534, 537
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BcoDI GTCTC 1 cut(s) 629
BfoI RGCGCY 2 cut(s) 528, 611
BisI GCNGC 9 cut(s) 48, 112, 216, 219, 309, 312, 523, 548, 551
BlsI GCNGC 9 cut(s) 49, 113, 217, 220, 310, 313, 524, 549, 552
Bme18I GGWCC 1 cut(s) 591
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 571, 591
BmiI GGNNCC 2 cut(s) 476, 615
BmsI GCATC 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 6, 640, 687
BsaWI WCCGGW 2 cut(s) 167, 400
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 439, 484, 730
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 136, 433
Bse21I CCTNAGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 6, 640, 687
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 171, 439, 484, 730
BseMI GCAATG 1 cut(s) 495
BseNI ACTGG 2 cut(s) 136, 433
BseRI GAGGAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 5 cut(s) 34, 205, 323, 534, 537
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 5 cut(s) 30, 45, 215, 339, 496
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 5 cut(s) 135, 142, 281, 573, 692
BshNI GGYRCC 1 cut(s) 474
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 96, 465
BsiSI CCGG 4 cut(s) 108, 168, 282, 401
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 4 cut(s) 171, 439, 484, 730
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 5 cut(s) 135, 142, 281, 573, 692
Bsp1286I GDGCHC 3 cut(s) 96, 465, 477
Bsp143I GATC 5 cut(s) 87, 210, 270, 334, 340
Bsp19I CCATGG 1 cut(s) 6
Bsp68I TCGCGA 1 cut(s) 339
BspACI CCGC 6 cut(s) 111, 215, 308, 479, 504, 522
BspANI GGCC 5 cut(s) 135, 142, 281, 573, 692
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 5 cut(s) 30, 45, 215, 339, 496
BspLI GGNNCC 2 cut(s) 476, 615
BspPI GGATC 4 cut(s) 218, 278, 335, 342
BspT107I GGYRCC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 136, 433
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 6, 640, 687
BssMI GATC 5 cut(s) 87, 210, 270, 334, 340
BssT1I CCWWGG 2 cut(s) 6, 640
Bst4CI ACNGT 2 cut(s) 200, 277
BstC8I GCNNGC 3 cut(s) 52, 612, 716
BstDEI CTNAG 3 cut(s) 59, 68, 186
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 5 cut(s) 30, 45, 215, 339, 496
BstH2I RGCGCY 2 cut(s) 528, 611
BstHHI GCGC 5 cut(s) 47, 498, 527, 555, 610
BstKTI GATC 5 cut(s) 90, 213, 273, 337, 343
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 5 cut(s) 87, 210, 270, 334, 340
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 51, 108, 132, 544
BstNSI RCATGY 1 cut(s) 542
BstPI GGTNACC 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 5 cut(s) 30, 45, 215, 339, 496
BstV1I GCAGC 5 cut(s) 34, 205, 323, 534, 537
Bsu15I ATCGAT 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 5 cut(s) 135, 142, 281, 573, 692
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 282, 523
BtuMI TCGCGA 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 52, 612, 716
CfoI GCGC 5 cut(s) 47, 498, 527, 555, 610
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 571, 591
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 2 cut(s) 390, 502
CviAII CATG 3 cut(s) 7, 446, 539
DdeI CTNAG 3 cut(s) 59, 68, 186
DpnI GATC 5 cut(s) 89, 212, 272, 336, 342
DpnII GATC 5 cut(s) 87, 210, 270, 334, 340
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 279, 690
Eam1105I GACNNNNNGTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 6, 640
Eco47I GGWCC 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 676
EcoO65I GGTNACC 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 6, 640
ErhI CCWWGG 2 cut(s) 6, 640
FaeI CATG 3 cut(s) 10, 449, 542
FaiI YATR 4 cut(s) 8, 447, 540, 751
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 6, 445, 538
FauI CCCGC 2 cut(s) 486, 497
Fnu4HI GCNGC 9 cut(s) 48, 112, 216, 219, 309, 312, 523, 548, 551
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 9 cut(s) 48, 112, 216, 219, 309, 312, 523, 548, 551
FspI TGCGCA 1 cut(s) 554
GlaI GCGC 5 cut(s) 46, 497, 526, 554, 609
GluI GCNGC 9 cut(s) 48, 112, 216, 219, 309, 312, 523, 548, 551
HaeII RGCGCY 2 cut(s) 528, 611
HaeIII GGCC 5 cut(s) 135, 142, 281, 573, 692
HapII CCGG 4 cut(s) 108, 168, 282, 401
HgaI GACGC 2 cut(s) 390, 502
HhaI GCGC 5 cut(s) 47, 498, 527, 555, 610
Hin1II CATG 3 cut(s) 10, 449, 542
Hin6I GCGC 5 cut(s) 45, 496, 525, 553, 608
HinP1I GCGC 5 cut(s) 45, 496, 525, 553, 608
HinfI GANTC 3 cut(s) 240, 260, 566
HpaII CCGG 4 cut(s) 108, 168, 282, 401
HphI GGTGA 2 cut(s) 415, 688
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 376, 634
Hpy188III TCNNGA 2 cut(s) 194, 338
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 200, 277
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 108, 132, 544
HpyF3I CTNAG 3 cut(s) 59, 68, 186
Hsp92II CATG 3 cut(s) 10, 449, 542
HspAI GCGC 5 cut(s) 45, 496, 525, 553, 608
Kzo9I GATC 5 cut(s) 87, 210, 270, 334, 340
LmnI GCTCC 2 cut(s) 468, 619
Lsp1109I GCAGC 5 cut(s) 34, 205, 323, 534, 537
LweI GCATC 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 676
MalI GATC 5 cut(s) 89, 212, 272, 336, 342
MboI GATC 5 cut(s) 87, 210, 270, 334, 340
MboII GAAGA 1 cut(s) 648
MfeI CAATTG 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 96, 465, 477
MluCI AATT 1 cut(s) 482
MluI ACGCGT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 312, 435
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 4 cut(s) 108, 168, 282, 401
MunI CAATTG 1 cut(s) 482
MvnI CGCG 5 cut(s) 30, 45, 215, 339, 496
MwoI GCNNNNNNNGC 4 cut(s) 51, 108, 132, 544
NcoI CCATGG 1 cut(s) 6
NdeII GATC 5 cut(s) 87, 210, 270, 334, 340
NlaIII CATG 3 cut(s) 10, 449, 542
NlaIV GGNNCC 2 cut(s) 476, 615
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 676
NruI TCGCGA 1 cut(s) 339
NsbI TGCGCA 1 cut(s) 554
NspI RCATGY 1 cut(s) 542
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PfeI GAWTC 2 cut(s) 240, 260
PkrI GCNGC 9 cut(s) 49, 113, 217, 220, 310, 313, 524, 549, 552
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PspEI GGTNACC 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 476, 615
PspPI GGNCC 2 cut(s) 571, 591
PvuI CGATCG 1 cut(s) 90
RruI TCGCGA 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 9 cut(s) 48, 112, 216, 219, 309, 312, 523, 548, 551
Sau3AI GATC 5 cut(s) 87, 210, 270, 334, 340
Sau96I GGNCC 2 cut(s) 571, 591
SchI GAGTC 1 cut(s) 575
SduI GDGCHC 3 cut(s) 96, 465, 477
SetI ASST 9 cut(s) 74, 185, 316, 332, 374, 462, 642, 678, 689
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 1 cut(s) 482
SsiI CCGC 6 cut(s) 111, 215, 308, 479, 504, 522
StyI CCWWGG 2 cut(s) 6, 640
TaaI ACNGT 2 cut(s) 200, 277
TaqI TCGA 6 cut(s) 86, 96, 223, 243, 387, 415
TasI AATT 1 cut(s) 482
TauI GCSGC 4 cut(s) 114, 218, 311, 525
TfiI GAWTC 2 cut(s) 240, 260
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 282, 523
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 5 cut(s) 47, 218, 311, 547, 550
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 2 cut(s) 282, 523
VpaK11BI GGWCC 1 cut(s) 591
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.