FvH4_6g23673

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
17789549 .. 17791923
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23673.t1

Sequence Viewer

Length: 720 bp
ATGGTATTTCATGCTTCTGCCTCGGGATCTGGATCGACCTCCCTCTCAGTCCCTGTTGTGTCTCTTCCAAAAGAGAAAAGGACGGTGAGCATCAGAGACGTTCCTGAGTTCCACTCCCATACCAAAATCACAGGTGTGCGTAGGGGTAGAGATGAAGATGATTCTGGTGGTGGTAAGCGTGTTAAGCATTCCCTTGCTATGATTCCGGAGGAAATTGGTTTATCTAACAAGAAGAAGACCGAAGATGTGGTGTCAAAGATGCTGGTCTCAATGACTCCTGGTTCGGCAAGAAATGGAAGTGCAGAAGACCTCGCCGATCACACCAGCATGATCAGCCACCTTACCAGAGGAGAGAATGGCGCCGCCAACGAAACCCTAGGTTTTGAAGGCTTATGGAACGGAATTCCCTTAATCTGGGCATCTGCCTTCGTTCCATCGCCGCCGGTGTTAGTGGTGATGGTGGCGTTGAATCGGTTACGTCTGTCAAGATCTTGGATCAGGGCTAGAATGTGGGTGGACCTTTTGTGGAGATATGACCTTGTGCTCGCGATGGTGGTGCTAGTATTGACGAGCGCCGATGGTAGCGAAACTGGAATTGGCGACCCTTTCGGGATTGACGGTAATTTAACGGCAGCGGAGGCAAGCTGGTACGGGAGGCAGGTGTTGTGGAATCCTACCTTTTCTGGGCTGGGGTTTCGTTTGGGCATTGTTTATGGATAA

Protein Analysis

240

Amino Acids

25.86

Weight (kDa)

8.05

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 359
AccII CGCG 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 3 cut(s) 363, 440, 635
AclWI GGATC 3 cut(s) 34, 40, 503
AcsI RAATTY 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 2 cut(s) 414, 684
AgsI TTSAA 2 cut(s) 386, 469
AjnI CCWGG 1 cut(s) 277
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 1 cut(s) 645
AluI AGCT 1 cut(s) 645
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 66, 90, 271
AlwI GGATC 3 cut(s) 34, 40, 503
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 22
Aor13HI TCCGGA 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 2 cut(s) 362, 575
AspS9I GGNCC 1 cut(s) 517
AsuHPI GGTGA 2 cut(s) 97, 466
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 517
AvrII CCTAGG 1 cut(s) 376
BanI GGYRCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 242, 312
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 644
BccI CCATC 4 cut(s) 442, 451, 544, 572
BceAI ACGGC 1 cut(s) 645
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 3 cut(s) 66, 90, 271
BfaI CTAG 3 cut(s) 377, 504, 560
BfoI RGCGCY 2 cut(s) 363, 576
BfuAI ACCTGC 1 cut(s) 649
BglII AGATCT 1 cut(s) 488
BisI GCNGC 3 cut(s) 363, 440, 633
BlnI CCTAGG 1 cut(s) 376
BlsI GCNGC 3 cut(s) 364, 441, 634
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 3 cut(s) 99, 249, 428
BpiI GAAGAC 2 cut(s) 242, 312
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BsaBI GATNNNNATC 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 21, 376
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 684
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 595
Bse8I GATNNNNATC 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 21, 376
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 414, 684
BseMII CTCAG 2 cut(s) 60, 96
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 644
BseYI CCCAGC 1 cut(s) 688
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 2 cut(s) 206, 443
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 414, 684
BsmAI GTCTC 3 cut(s) 66, 90, 271
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 546
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 6 cut(s) 26, 32, 316, 330, 488, 495
Bsp68I TCGCGA 1 cut(s) 548
BspACI CCGC 3 cut(s) 363, 440, 635
BspCNI CTCAG 2 cut(s) 59, 97
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 3 cut(s) 34, 40, 503
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 21, 376
BssMI GATC 6 cut(s) 26, 32, 316, 330, 488, 495
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 85, 620
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 546, 643
BstDEI CTNAG 2 cut(s) 46, 105
BstFNI CGCG 1 cut(s) 548
BstH2I RGCGCY 2 cut(s) 363, 576
BstHHI GCGC 2 cut(s) 362, 575
BstKTI GATC 6 cut(s) 29, 35, 319, 333, 491, 498
BstMAI GTCTC 3 cut(s) 66, 90, 271
BstMBI GATC 6 cut(s) 26, 32, 316, 330, 488, 495
BstMWI GCNNNNNNNGC 3 cut(s) 184, 333, 638
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 644
BstV2I GAAGAC 2 cut(s) 242, 312
BstX2I RGATCY 2 cut(s) 26, 488
BstYI RGATCY 2 cut(s) 26, 488
BtgZI GCGATG 2 cut(s) 420, 563
BtuMI TCGCGA 1 cut(s) 548
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 546, 643
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 2 cut(s) 362, 575
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 649
CviAII CATG 2 cut(s) 11, 328
CviJI RGCY 5 cut(s) 336, 390, 503, 645, 688
CviKI_1 RGCY 5 cut(s) 336, 390, 503, 645, 688
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 2 cut(s) 46, 105
DinI GGCGCC 1 cut(s) 361
DpnI GATC 6 cut(s) 28, 34, 318, 332, 490, 497
DpnII GATC 6 cut(s) 26, 32, 316, 330, 488, 495
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 376
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 14, 331
FaiI YATR 7 cut(s) 12, 120, 200, 329, 394, 534, 714
FaqI GGGAC 1 cut(s) 35
FatI CATG 2 cut(s) 10, 327
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 363, 440, 633
Fsp4HI GCNGC 3 cut(s) 363, 440, 633
FspBI CTAG 3 cut(s) 377, 504, 560
GlaI GCGC 2 cut(s) 361, 574
GluI GCNGC 3 cut(s) 363, 440, 633
GsaI CCCAGC 1 cut(s) 692
HaeII RGCGCY 2 cut(s) 363, 576
HapII CCGG 2 cut(s) 206, 443
HhaI GCGC 2 cut(s) 362, 575
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 2 cut(s) 14, 331
Hin6I GCGC 2 cut(s) 360, 573
HinP1I GCGC 2 cut(s) 360, 573
HinfI GANTC 5 cut(s) 161, 202, 274, 469, 670
HpaII CCGG 2 cut(s) 206, 443
HphI GGTGA 2 cut(s) 97, 466
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 7 cut(s) 24, 30, 104, 206, 486, 547, 610
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 380, 436
HpyCH4III ACNGT 2 cut(s) 85, 620
HpyCH4IV ACGT 2 cut(s) 99, 478
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 333, 638
HpyF3I CTNAG 2 cut(s) 46, 105
HpySE526I ACGT 2 cut(s) 99, 478
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 2 cut(s) 14, 331
HspAI GCGC 2 cut(s) 360, 573
KasI GGCGCC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 6 cut(s) 26, 32, 316, 330, 488, 495
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 3 cut(s) 99, 249, 428
MaeI CTAG 3 cut(s) 377, 504, 560
MaeII ACGT 2 cut(s) 99, 478
MaeIII GTNAC 1 cut(s) 474
MalI GATC 6 cut(s) 28, 34, 318, 332, 490, 497
MboI GATC 6 cut(s) 26, 32, 316, 330, 488, 495
MboII GAAGA 6 cut(s) 56, 167, 244, 247, 254, 317
MflI RGATCY 2 cut(s) 26, 488
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 4 cut(s) 213, 402, 594, 622
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 8 cut(s) 31, 49, 53, 202, 320, 341, 631, 648
MroI TCCGGA 1 cut(s) 205
MseI TTAA 3 cut(s) 183, 410, 626
MslI CAYNNNNRTG 2 cut(s) 134, 326
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 206, 443
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 3 cut(s) 184, 333, 638
NarI GGCGCC 1 cut(s) 360
NdeII GATC 6 cut(s) 26, 32, 316, 330, 488, 495
NlaIII CATG 2 cut(s) 14, 331
NlaIV GGNNCC 1 cut(s) 361
NruI TCGCGA 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 649
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 4 cut(s) 161, 202, 469, 670
PkrI GCNGC 3 cut(s) 364, 441, 634
PleI GAGTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 26, 488
RruI TCGCGA 1 cut(s) 548
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 2 cut(s) 134, 326
SaqAI TTAA 3 cut(s) 183, 410, 626
SatI GCNGC 3 cut(s) 363, 440, 633
Sau3AI GATC 6 cut(s) 26, 32, 316, 330, 488, 495
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 3 cut(s) 99, 249, 428
SfoI GGCGCC 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 442
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 134, 326
Sse9I AATT 4 cut(s) 213, 402, 594, 622
SsiI CCGC 3 cut(s) 363, 440, 635
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 3 cut(s) 377, 504, 560
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 85, 620
TaiI ACGT 2 cut(s) 102, 481
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 254
TasI AATT 4 cut(s) 213, 402, 594, 622
TauI GCSGC 2 cut(s) 365, 442
TfiI GAWTC 4 cut(s) 161, 202, 469, 670
Tru1I TTAA 3 cut(s) 183, 410, 626
Tru9I TTAA 3 cut(s) 183, 410, 626
TseI GCWGC 1 cut(s) 632
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 402
XmaJI CCTAGG 1 cut(s) 376
XspI CTAG 3 cut(s) 377, 504, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.