RchiOBHm_Chr1g0333831

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000172
Physical Location & Seq
Forward (+)
25973779 .. 25976656
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56261

Sequence Viewer

Length: 363 bp
ATGATGGCCTTGAGAGGTGTGTGGCAACTGAAAAAACTGGTTGTGAGCTATTCTGATTGGGGAGGAAGCAGTAGGGGAATCAGGTCATTCATGGAGTCTTACCTACCTGCATTTAAGGAGAAGAATCCTCAGCTAGAGGTAGTTACTGAACACATTCGTGGTCAGCATCCTCATTTGAAGGGCTTATACAACAACCAAAATGAAAGAGTGGTATGTGTGAAGAATATGGATCCAGAAGAGATTCTTCAATGTGCAACTAGGCTAAGGAATTCACTCGGGAGAAAAGTGGTGAAGCTGCGGACTAGACATGTAACCAAACATCCAAGCGTGCAAGGTACCTGGACGACAGACATCAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

120

Amino Acids

13.92

Weight (kDa)

10.07

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 27 - 78 2.1e-14 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 2 cut(s) 268, 356
AfaI GTAC 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 178, 248
AjnI CCWGG 1 cut(s) 338
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 3 cut(s) 48, 133, 295
AluI AGCT 3 cut(s) 48, 133, 295
AlwI GGATC 2 cut(s) 224, 237
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 2 cut(s) 268, 356
Asp700I GAANNNNTTC 2 cut(s) 153, 240
Asp718I GGTACC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 275
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 335
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 340
BfaI CTAG 3 cut(s) 134, 258, 303
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 231, 337
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 175
Bpu10I CCTNAGC 2 cut(s) 129, 263
BpuEI CTTGAG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 166, 319
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 275
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 231, 337
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 2 cut(s) 224, 237
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 42
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 129, 263
BstF5I GGATG 2 cut(s) 166, 319
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 166, 319
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 336
CviAII CATG 2 cut(s) 91, 308
CviJI RGCY 6 cut(s) 8, 48, 133, 183, 262, 295
CviKI_1 RGCY 6 cut(s) 8, 48, 133, 183, 262, 295
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 2 cut(s) 129, 263
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 94, 311
FaiI YATR 5 cut(s) 92, 187, 214, 227, 309
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 2 cut(s) 90, 307
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 153, 306
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 3 cut(s) 134, 258, 303
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 94, 311
HinfI GANTC 4 cut(s) 78, 95, 124, 241
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 233, 277
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 110, 254, 331
HpyF3I CTNAG 2 cut(s) 129, 263
Hsp92II CATG 2 cut(s) 94, 311
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 23, 67, 120, 246, 325, 352
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 175
MaeI CTAG 3 cut(s) 134, 258, 303
MaeIII GTNAC 2 cut(s) 142, 310
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 4 cut(s) 133, 232, 236, 248
MflI RGATCY 1 cut(s) 229
MluCI AATT 2 cut(s) 268, 356
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 5 cut(s) 8, 56, 130, 138, 180
MroXI GAANNNNTTC 2 cut(s) 153, 240
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 94, 311
NlaIV GGNNCC 2 cut(s) 231, 337
NspI RCATGY 1 cut(s) 311
OliI CACNNNNGTG 1 cut(s) 156
PciI ACATGT 1 cut(s) 307
PdmI GAANNNNTTC 2 cut(s) 153, 240
PfeI GAWTC 3 cut(s) 78, 124, 241
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 231, 337
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 340
SfaNI GCATC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 268, 356
SsiI CCGC 1 cut(s) 298
SspMI CTAG 3 cut(s) 134, 258, 303
StyD4I CCNGG 1 cut(s) 338
TasI AATT 2 cut(s) 268, 356
TfiI GAWTC 3 cut(s) 78, 124, 241
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 79, 216
XapI RAATTY 2 cut(s) 268, 356
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 2 cut(s) 153, 240
XspI CTAG 3 cut(s) 134, 258, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.