Rmu_ssc0000480.1_g000025

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000480.1
OG0000172
Physical Location & Seq
Reverse (-)
127442 .. 133246
5805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000480.1_g000025.1.cds

Sequence Viewer

Length: 1482 bp
atgttgtggaggcatgttggcaaggccgggaaggtggcttcctggataggtatcggccgcttccgactaccgagggatagcttggacatcgggctacaagatgttggtggtgttgatagttttagttctatacttaaacctgttggcaccaaacatggaaggcgagctgtgatgcggcctgggcgcaaggaagaaggtgaagtcgtggggttagggtttcgagtatacaacgttgtgcggcgtcttactttcatggctgcagcgattgcatccatgactgccagacttgcgactaaactgtcgctcaaggagggagaagaaccagttgatttggggaatctccgagttcaggggaaagagtttttggctcggaatttctatttggtaggaaggctcaatacttgcagggggctgatgctggattcattccggagcgcggtaagatctatgtggaggttgactggaaccgtggaggtacaaccaaggggtgaccgttttctgtttacattcacccatgacagggatgttgctagagtaaagaagggaggaccgtggggtttccaacgtgccatgattctcctgaatgactacgatgggttttcggagctctctgcagtgaggttggattttgtttggatctgggttacacttgatggcatacctccgggtattttgacagaacctaccgtccggttggttggtgggacaattggtgaggtgctggaggtggatcgtccggcgctgcgtaggggcgatgctcaagttaggcttgttctatccatccatgatccggtgcgtctcgaccgtagggttagggtttctccctctgacatcctaaccctaagattcaggtatgaaaggctccttgggcgctgccactcctgtgctatgctgaatcatggtggccaacgatgccctagggtggacgagttggcagctgatgctggggcggagcagggatcacaaacggctggtggaccgatcgttccagcccttgtctttagggcaaacgttcaaccctccatctcttctccattgatctctactttcaaggtccctggcttgtcgaagaagaaaccggtacagattcgtgagcttcctgcgcttgcgttgtctggtactgagggtacctccacccaaactcaagtggtagggatgcgccggcccagggctgaggatgctcctgcggatggtaagcgagccaagcatggcttggccttggcgccggtaaccctgcaaccggaaaatcttgggttcgagttttctgatgcaggtttggtaggtgggaagctgtctcaaggccctaaggtctacaagaagaagggcaggcctcggggttcgcgaaacaaagtcaaagcggcatcgatgtcagccaccgtggatgactctgggtctatggagtcggggccccttgatggtggttctgttggcatgcctgagaagcctaatgggctggctaagcctgtttcccagtccgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

493

Amino Acids

53.51

Weight (kDa)

10.31

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 1262
Acc65I GGTACC 1 cut(s) 1127
AccB1I GGYRCC 3 cut(s) 146, 1127, 1222
AccI GTMKAC 2 cut(s) 225, 1311
AccII CGCG 2 cut(s) 437, 1342
AccIII TCCGGA 1 cut(s) 429
AciI CCGC 7 cut(s) 58, 175, 238, 437, 950, 1187, 1358
AclI AACGTT 2 cut(s) 231, 1011
AclWI GGATC 4 cut(s) 644, 738, 782, 967
AcoI YGGCCR 2 cut(s) 55, 904
AcsI RAATTY 1 cut(s) 373
AcyI GRCGYC 2 cut(s) 241, 1223
AfaI GTAC 4 cut(s) 477, 1083, 1120, 1129
AgeI ACCGGT 1 cut(s) 1078
AgsI TTSAA 2 cut(s) 1016, 1051
AhdI GACNNNNNGTC 1 cut(s) 1390
AjnI CCWGG 4 cut(s) 41, 178, 1057, 1166
AjuI GAANNNNNNNTTGG 6 cut(s) 347, 365, 379, 397, 849, 881
AleI CACNNNNGTG 1 cut(s) 882
AloI GAACNNNNNNTCC 4 cut(s) 672, 704, 969, 1001
AluBI AGCT 6 cut(s) 81, 167, 607, 938, 1096, 1291
AluI AGCT 6 cut(s) 81, 167, 607, 938, 1096, 1291
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 803, 1299
AlwI GGATC 4 cut(s) 644, 738, 782, 967
Ama87I CYCGRG 1 cut(s) 1332
Aor13HI TCCGGA 1 cut(s) 429
AoxI GGCC 9 cut(s) 24, 55, 176, 904, 1163, 1215, 1300, 1328, 1406
ApaI GGGCCC 1 cut(s) 1410
ApeKI GCWGC 5 cut(s) 257, 260, 742, 873, 935
ApoI RAATTY 1 cut(s) 373
AsiGI ACCGGT 1 cut(s) 1078
Asp718I GGTACC 1 cut(s) 1127
AspA2I CCTAGG 1 cut(s) 917
AspLEI GCGC 7 cut(s) 186, 437, 742, 873, 1105, 1161, 1225
AspS9I GGNCC 7 cut(s) 548, 977, 1054, 1164, 1301, 1406, 1407
AsuC2I CCSGG 3 cut(s) 28, 666, 1477
AsuHPI GGTGA 4 cut(s) 209, 500, 502, 725
AvaI CYCGRG 1 cut(s) 1332
AvaII GGWCC 3 cut(s) 548, 977, 1054
AvrII CCTAGG 1 cut(s) 917
AxyI CCTNAGG 1 cut(s) 1305
BaeGI GKGCMC 1 cut(s) 1410
BalI TGGCCA 1 cut(s) 906
BanI GGYRCC 3 cut(s) 146, 1127, 1222
BanII GRGCYC 2 cut(s) 609, 1410
BarI GAAGNNNNNNTAC 2 cut(s) 382, 414
Bbv12I GWGCWC 1 cut(s) 609
BbvCI CCTCAGC 1 cut(s) 1173
BbvI GCAGC 5 cut(s) 244, 272, 729, 860, 947
BccI CCATC 6 cut(s) 587, 647, 788, 1031, 1184, 1409
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 4 cut(s) 43, 180, 1059, 1168
BcnI CCSGG 3 cut(s) 28, 666, 1477
BcoDI GTCTC 2 cut(s) 803, 1299
BfaI CTAG 2 cut(s) 531, 918
BfmI CTRYAG 2 cut(s) 258, 612
BfoI RGCGCY 3 cut(s) 743, 874, 1226
BfuAI ACCTGC 1 cut(s) 1262
BglI GCCNNNNNGGC 1 cut(s) 1450
BglII AGATCT 1 cut(s) 443
BisI GCNGC 9 cut(s) 58, 176, 239, 258, 261, 743, 874, 936, 1359
BlnI CCTAGG 1 cut(s) 917
BlpI GCTNAGC 1 cut(s) 1458
BlsI GCNGC 9 cut(s) 59, 177, 240, 259, 262, 744, 875, 937, 1360
Bme1390I CCNGG 7 cut(s) 28, 43, 180, 666, 1059, 1168, 1477
Bme18I GGWCC 3 cut(s) 548, 977, 1054
BmeRI GACNNNNNGTC 1 cut(s) 1390
BmeT110I CYCGRG 1 cut(s) 1332
BmgT120I GGNCC 7 cut(s) 548, 977, 1054, 1164, 1301, 1406, 1407
BmiI GGNNCC 9 cut(s) 148, 466, 863, 1056, 1129, 1224, 1407, 1408, 1409
BmrFI CCNGG 7 cut(s) 28, 43, 180, 666, 1059, 1168, 1477
BmrI ACTGGG 1 cut(s) 1465
BmuI ACTGGG 1 cut(s) 1465
BplI GAGNNNNNCTC 2 cut(s) 1115, 1147
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 1173
Bpu1102I GCTNAGC 1 cut(s) 1458
BpuEI CTTGAG 4 cut(s) 290, 744, 1128, 1281
BpuMI CCSGG 3 cut(s) 28, 666, 1477
Bsa29I ATCGAT 1 cut(s) 1364
BsaBI GATNNNNATC 1 cut(s) 50
BsaHI GRCGYC 2 cut(s) 241, 1223
BsaWI WCCGGW 5 cut(s) 429, 690, 790, 1078, 1240
Bse118I RCCGGY 3 cut(s) 1078, 1161, 1225
Bse1I ACTGG 3 cut(s) 323, 466, 1471
Bse21I CCTNAGG 1 cut(s) 1305
Bse8I GATNNNNATC 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 429
BseBI CCWGG 4 cut(s) 43, 180, 1059, 1168
BseCI ATCGAT 1 cut(s) 1364
BseGI GGATG 8 cut(s) 269, 529, 780, 831, 1161, 1183, 1195, 1387
BseJI GATNNNNATC 1 cut(s) 50
BseMII CTCAG 3 cut(s) 1113, 1164, 1428
BseNI ACTGG 3 cut(s) 323, 466, 1471
BseSI GKGCMC 1 cut(s) 1410
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 5 cut(s) 244, 272, 729, 860, 947
BseYI CCCAGC 1 cut(s) 944
Bsh1236I CGCG 2 cut(s) 437, 1342
Bsh1285I CGRYCG 3 cut(s) 58, 805, 984
BshFI GGCC 9 cut(s) 26, 57, 178, 906, 1165, 1217, 1302, 1330, 1408
BshNI GGYRCC 3 cut(s) 146, 1127, 1222
BshTI ACCGGT 1 cut(s) 1078
BshVI ATCGAT 1 cut(s) 1364
BsiEI CGRYCG 3 cut(s) 58, 805, 984
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 1332
BslFI GGGAC 2 cut(s) 718, 1040
BsmAI GTCTC 2 cut(s) 803, 1299
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 2 cut(s) 718, 1040
BsnI GGCC 9 cut(s) 26, 57, 178, 906, 1165, 1217, 1302, 1330, 1408
BsoBI CYCGRG 1 cut(s) 1332
Bsp120I GGGCCC 1 cut(s) 1406
Bsp1286I GDGCHC 2 cut(s) 609, 1410
Bsp13I TCCGGA 1 cut(s) 429
Bsp143I GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
Bsp1720I GCTNAGC 1 cut(s) 1458
Bsp68I TCGCGA 1 cut(s) 1342
BspACI CCGC 7 cut(s) 58, 175, 238, 437, 950, 1187, 1358
BspANI GGCC 9 cut(s) 26, 57, 178, 906, 1165, 1217, 1302, 1330, 1408
BspCNI CTCAG 3 cut(s) 1114, 1165, 1429
BspDI ATCGAT 1 cut(s) 1364
BspEI TCCGGA 1 cut(s) 429
BspFNI CGCG 2 cut(s) 437, 1342
BspLI GGNNCC 9 cut(s) 148, 466, 863, 1056, 1129, 1224, 1407, 1408, 1409
BspMAI CTGCAG 2 cut(s) 262, 616
BspMI ACCTGC 1 cut(s) 1262
BspPI GGATC 4 cut(s) 644, 738, 782, 967
BspT107I GGYRCC 3 cut(s) 146, 1127, 1222
BsrFI RCCGGY 3 cut(s) 1078, 1161, 1225
BsrI ACTGG 3 cut(s) 323, 466, 1471
BssAI RCCGGY 3 cut(s) 1078, 1161, 1225
BssMI GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
BssNAI GTATAC 1 cut(s) 226
BssNI GRCGYC 2 cut(s) 241, 1223
BssT1I CCWWGG 4 cut(s) 482, 865, 917, 1218
Bst1107I GTATAC 1 cut(s) 226
Bst2UI CCWGG 4 cut(s) 43, 180, 1059, 1168
Bst4CI ACNGT 7 cut(s) 300, 469, 494, 552, 688, 806, 1378
Bst6I CTCTTC 1 cut(s) 1033
BstACI GRCGYC 2 cut(s) 241, 1223
BstAPI GCANNNNNTGC 2 cut(s) 266, 941
BstC8I GCNNGC 7 cut(s) 165, 1107, 1163, 1200, 1328, 1433, 1455
BstDEI CTNAG 6 cut(s) 842, 1122, 1173, 1305, 1437, 1458
BstDSI CCRYGG 3 cut(s) 468, 551, 1377
BstEII GGTNACC 2 cut(s) 488, 1228
BstF5I GGATG 8 cut(s) 269, 529, 780, 831, 1161, 1183, 1195, 1387
BstFNI CGCG 2 cut(s) 437, 1342
BstH2I RGCGCY 3 cut(s) 743, 874, 1226
BstHHI GCGC 7 cut(s) 186, 437, 742, 873, 1105, 1161, 1225
BstKTI GATC 7 cut(s) 446, 639, 733, 790, 962, 984, 1041
BstMAI GTCTC 2 cut(s) 803, 1299
BstMBI GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
BstMCI CGRYCG 3 cut(s) 58, 805, 984
BstNI CCWGG 4 cut(s) 43, 180, 1059, 1168
BstNSI RCATGY 2 cut(s) 17, 1435
BstPI GGTNACC 2 cut(s) 488, 1228
BstSCI CCNGG 7 cut(s) 26, 41, 178, 664, 1057, 1166, 1475
BstSFI CTRYAG 2 cut(s) 258, 612
BstSLI GKGCMC 1 cut(s) 1410
BstUI CGCG 2 cut(s) 437, 1342
BstV1I GCAGC 5 cut(s) 244, 272, 729, 860, 947
BstX2I RGATCY 2 cut(s) 443, 636
BstYI RGATCY 2 cut(s) 443, 636
BstZ17I GTATAC 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 1364
Bsu36I CCTNAGG 1 cut(s) 1305
BsuRI GGCC 9 cut(s) 26, 57, 178, 906, 1165, 1217, 1302, 1330, 1408
BsuTUI ATCGAT 1 cut(s) 1364
BtgI CCRYGG 3 cut(s) 468, 551, 1377
BtgZI GCGATG 1 cut(s) 768
BtsCI GGATG 8 cut(s) 269, 529, 780, 831, 1161, 1183, 1195, 1387
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 621
BtuMI TCGCGA 1 cut(s) 1342
BveI ACCTGC 1 cut(s) 1262
Cac8I GCNNGC 7 cut(s) 165, 1107, 1163, 1200, 1328, 1433, 1455
CfoI GCGC 7 cut(s) 186, 437, 742, 873, 1105, 1161, 1225
Cfr10I RCCGGY 3 cut(s) 1078, 1161, 1225
Cfr13I GGNCC 7 cut(s) 548, 977, 1054, 1164, 1301, 1406, 1407
ClaI ATCGAT 1 cut(s) 1364
CseI GACGC 2 cut(s) 230, 785
Csp6I GTAC 4 cut(s) 476, 1082, 1119, 1128
CspAI ACCGGT 1 cut(s) 1078
CviQI GTAC 4 cut(s) 476, 1082, 1119, 1128
DdeI CTNAG 6 cut(s) 842, 1122, 1173, 1305, 1437, 1458
DinI GGCGCC 1 cut(s) 1224
DpnI GATC 7 cut(s) 445, 638, 732, 789, 961, 983, 1040
DpnII GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
DrdI GACNNNNNNGTC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 1390
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 55, 904
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 1033
Eam1105I GACNNNNNGTC 1 cut(s) 1390
EarI CTCTTC 1 cut(s) 1033
EciI GGCGGA 1 cut(s) 965
Ecl136II GAGCTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 4 cut(s) 482, 865, 917, 1218
Eco147I AGGCCT 1 cut(s) 1330
Eco24I GRGCYC 2 cut(s) 609, 1410
Eco47I GGWCC 3 cut(s) 548, 977, 1054
Eco52I CGGCCG 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 607
Eco81I CCTNAGG 1 cut(s) 1305
Eco88I CYCGRG 1 cut(s) 1332
Eco91I GGTNACC 2 cut(s) 488, 1228
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 4 cut(s) 1054, 1301, 1406, 1407
EcoO65I GGTNACC 2 cut(s) 488, 1228
EcoRII CCWGG 4 cut(s) 41, 178, 1057, 1166
EcoT14I CCWWGG 4 cut(s) 482, 865, 917, 1218
EcoT38I GRGCYC 2 cut(s) 609, 1410
EgeI GGCGCC 1 cut(s) 1224
EheI GGCGCC 1 cut(s) 1224
ErhI CCWWGG 4 cut(s) 482, 865, 917, 1218
Esp3I CGTCTC 1 cut(s) 803
FalI AAGNNNNNCTT 4 cut(s) 753, 785, 1196, 1228
FaqI GGGAC 2 cut(s) 718, 1040
FblI GTMKAC 2 cut(s) 225, 1311
Fnu4HI GCNGC 9 cut(s) 58, 176, 239, 258, 261, 743, 874, 936, 1359
FokI GGATG 8 cut(s) 256, 536, 767, 818, 1168, 1190, 1202, 1394
FriOI GRGCYC 2 cut(s) 609, 1410
Fsp4HI GCNGC 9 cut(s) 58, 176, 239, 258, 261, 743, 874, 936, 1359
FspBI CTAG 2 cut(s) 531, 918
GlaI GCGC 7 cut(s) 185, 436, 741, 872, 1104, 1160, 1224
GluI GCNGC 9 cut(s) 58, 176, 239, 258, 261, 743, 874, 936, 1359
GsaI CCCAGC 1 cut(s) 948
GsuI CTGGAG 1 cut(s) 743
HaeII RGCGCY 3 cut(s) 743, 874, 1226
HaeIII GGCC 9 cut(s) 26, 57, 178, 906, 1165, 1217, 1302, 1330, 1408
HgaI GACGC 2 cut(s) 230, 785
HhaI GCGC 7 cut(s) 186, 437, 742, 873, 1105, 1161, 1225
Hin1I GRCGYC 2 cut(s) 241, 1223
Hin6I GCGC 7 cut(s) 184, 435, 740, 871, 1103, 1159, 1223
HinP1I GCGC 7 cut(s) 184, 435, 740, 871, 1103, 1159, 1223
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 8 cut(s) 337, 422, 574, 846, 895, 1087, 1385, 1400
HphI GGTGA 4 cut(s) 209, 500, 502, 725
Hpy166II GTNNAC 6 cut(s) 226, 459, 504, 925, 977, 1312
Hpy188I TCNGA 6 cut(s) 65, 344, 372, 604, 829, 1267
Hpy188III TCNNGA 5 cut(s) 430, 580, 800, 1091, 1341
Hpy8I GTNNAC 6 cut(s) 226, 459, 504, 925, 977, 1312
HpyAV CCTTC 6 cut(s) 25, 153, 188, 384, 535, 1315
HpyCH4III ACNGT 7 cut(s) 300, 469, 494, 552, 688, 806, 1378
HpyCH4IV ACGT 3 cut(s) 231, 565, 1011
HpyCH4V TGCA 6 cut(s) 260, 269, 405, 614, 1237, 1271
HpyF3I CTNAG 6 cut(s) 842, 1122, 1173, 1305, 1437, 1458
HpySE526I ACGT 3 cut(s) 231, 565, 1011
Hsp92I GRCGYC 2 cut(s) 241, 1223
HspAI GCGC 7 cut(s) 184, 435, 740, 871, 1103, 1159, 1223
KasI GGCGCC 1 cut(s) 1222
Kpn2I TCCGGA 1 cut(s) 429
KpnI GGTACC 1 cut(s) 1131
KroI GCCGGC 1 cut(s) 1161
KroNI GCCGGC 1 cut(s) 1163
Kzo9I GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
LmnI GCTCC 5 cut(s) 432, 604, 867, 952, 1186
Lsp1109I GCAGC 5 cut(s) 244, 272, 729, 860, 947
MaeI CTAG 2 cut(s) 531, 918
MaeII ACGT 3 cut(s) 231, 565, 1011
MaeIII GTNAC 3 cut(s) 488, 643, 1228
MalI GATC 7 cut(s) 445, 638, 732, 789, 961, 983, 1040
MboI GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
MboII GAAGA 6 cut(s) 203, 329, 1020, 1081, 1084, 1330
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 443, 636
MhlI GDGCHC 2 cut(s) 609, 1410
MlsI TGGCCA 1 cut(s) 906
MluCI AATT 2 cut(s) 373, 708
MluNI TGGCCA 1 cut(s) 906
Mly113I GGCGCC 1 cut(s) 1223
MlyI GAGTC 2 cut(s) 1379, 1409
MmeI TCCRAC 3 cut(s) 88, 586, 603
Mox20I TGGCCA 1 cut(s) 906
MroI TCCGGA 1 cut(s) 429
MroNI GCCGGC 1 cut(s) 1161
MscI TGGCCA 1 cut(s) 906
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 882
Msp20I TGGCCA 1 cut(s) 906
MspA1I CMGCKG 1 cut(s) 938
MspR9I CCNGG 7 cut(s) 28, 43, 180, 666, 1059, 1168, 1477
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 4 cut(s) 43, 180, 1059, 1168
MvnI CGCG 2 cut(s) 437, 1342
NaeI GCCGGC 1 cut(s) 1163
NarI GGCGCC 1 cut(s) 1223
NciI CCSGG 3 cut(s) 28, 666, 1477
NdeII GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
NgoMIV GCCGGC 1 cut(s) 1161
NlaIV GGNNCC 9 cut(s) 148, 466, 863, 1056, 1129, 1224, 1407, 1408, 1409
NmuCI GTSAC 1 cut(s) 488
NruI TCGCGA 1 cut(s) 1342
NspI RCATGY 2 cut(s) 17, 1435
OliI CACNNNNGTG 1 cut(s) 882
PaeI GCATGC 1 cut(s) 1435
PasI CCCWGGG 1 cut(s) 1167
PceI AGGCCT 1 cut(s) 1330
PcsI WCGNNNNNNNCGW 1 cut(s) 1339
PdiI GCCGGC 1 cut(s) 1163
PfeI GAWTC 6 cut(s) 337, 422, 574, 846, 895, 1087
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 1078
PkrI GCNGC 9 cut(s) 59, 177, 240, 259, 262, 744, 875, 937, 1360
Ple19I CGATCG 1 cut(s) 984
PleI GAGTC 2 cut(s) 1379, 1408
PluTI GGCGCC 1 cut(s) 1226
PpsI GAGTC 2 cut(s) 1379, 1408
PpuMI RGGWCCY 1 cut(s) 1054
Psp124BI GAGCTC 1 cut(s) 609
Psp1406I AACGTT 2 cut(s) 231, 1011
Psp5II RGGWCCY 1 cut(s) 1054
Psp6I CCWGG 4 cut(s) 41, 178, 1057, 1166
PspEI GGTNACC 2 cut(s) 488, 1228
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 4 cut(s) 41, 178, 1057, 1166
PspN4I GGNNCC 9 cut(s) 148, 466, 863, 1056, 1129, 1224, 1407, 1408, 1409
PspOMI GGGCCC 1 cut(s) 1406
PspPI GGNCC 7 cut(s) 548, 977, 1054, 1164, 1301, 1406, 1407
PspPPI RGGWCCY 1 cut(s) 1054
PstI CTGCAG 2 cut(s) 262, 616
PsuI RGATCY 2 cut(s) 443, 636
PvuI CGATCG 1 cut(s) 984
PvuII CAGCTG 1 cut(s) 938
RruI TCGCGA 1 cut(s) 1342
RsaI GTAC 4 cut(s) 477, 1083, 1120, 1129
RsaNI GTAC 4 cut(s) 476, 1082, 1119, 1128
RseI CAYNNNNRTG 1 cut(s) 882
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 9 cut(s) 58, 176, 239, 258, 261, 743, 874, 936, 1359
Sau3AI GATC 7 cut(s) 443, 636, 730, 787, 959, 981, 1038
Sau96I GGNCC 7 cut(s) 548, 977, 1054, 1164, 1301, 1406, 1407
SchI GAGTC 2 cut(s) 1379, 1409
ScrFI CCNGG 7 cut(s) 28, 43, 180, 666, 1059, 1168, 1477
SduI GDGCHC 2 cut(s) 609, 1410
SfcI CTRYAG 2 cut(s) 258, 612
SfoI GGCGCC 1 cut(s) 1224
SinI GGWCC 3 cut(s) 548, 977, 1054
SmiMI CAYNNNNRTG 1 cut(s) 882
SmlI CTYRAG 4 cut(s) 305, 759, 1143, 1296
SmoI CTYRAG 4 cut(s) 305, 759, 1143, 1296
SphI GCATGC 1 cut(s) 1435
Sse9I AATT 2 cut(s) 373, 708
SseBI AGGCCT 1 cut(s) 1330
SsiI CCGC 7 cut(s) 58, 175, 238, 437, 950, 1187, 1358
SspDI GGCGCC 1 cut(s) 1222
SspMI CTAG 2 cut(s) 531, 918
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 1330
StyD4I CCNGG 7 cut(s) 26, 41, 178, 664, 1057, 1166, 1475
StyI CCWWGG 4 cut(s) 482, 865, 917, 1218
TaaI ACNGT 7 cut(s) 300, 469, 494, 552, 688, 806, 1378
TaiI ACGT 3 cut(s) 234, 568, 1014
TaqI TCGA 5 cut(s) 220, 801, 1067, 1257, 1364
TaqII GACCGA 1 cut(s) 994
TasI AATT 2 cut(s) 373, 708
TauI GCSGC 4 cut(s) 60, 178, 241, 1361
TfiI GAWTC 6 cut(s) 337, 422, 574, 846, 895, 1087
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 5 cut(s) 257, 260, 742, 873, 935
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 241, 414, 870
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 3 cut(s) 548, 977, 1054
XapI RAATTY 1 cut(s) 373
XceI RCATGY 2 cut(s) 17, 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XmaJI CCTAGG 1 cut(s) 917
XmiI GTMKAC 2 cut(s) 225, 1311
XspI CTAG 2 cut(s) 531, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.